ATAD2B

General Information

Gene Name       : ATAD2B
Gene ID             : ENSG00000119778.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ATAD2B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ATAD2BENSG00000119778.1413.2912.1512.72ENCSR000AEF
HepG2ATAD2BENSG00000119778.144.3910.077.23ENCSR985KAT
K562ATAD2BENSG00000119778.146.437.306.87ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ATAD2B is not avaliable on ENCORE database.



Proteins bound to RNA
  • ATAD2B RNA is bound by 21 proteins.  







eCLIP assay for ATAD2B is not avaliable on ENCORE database.





21 proteins are bound to ATAD2B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr22397154023971636-3'-UTR,intron-Distal,intron-Proximal3.975333.90026K562KHSRP
chr22405543024055515-5'-UTR,intron-Distal,intron-Proximal5.9602611.24011HepG2XPO5
chr22409070824090812-CDS,intron-Distal,intron-Proximal3.983997.06029HepG2GRWD1
chr22397701423977063-CDS,intron-Distal,intron-Proximal5.709024.35676HepG2PRPF8
chr22404614324046192-CDS,intron-Distal4.673845.03746HepG2BCLAF1
chr22404613824046170-CDS,intron-Distal4.202103.87582K562ZNF622
chr22411122424111269-CDS,intron-Distal3.548043.61259K562ZNF622
chr22409070824090817-CDS,intron-Distal,intron-Proximal3.1314010.63727HepG2PPIG
chr22410859424108653-CDS,intron-Distal,intron-Proximal3.623684.80912HepG2PPIG
chr22409253224092570-CDS,intron-Distal,intron-Proximal3.469143.87469HepG2BCLAF1
chr22404638824046440-CDS,intron-Distal,intron-Proximal3.605655.97823HepG2BCLAF1
chr22409869924098775-CDS,intron-Distal,intron-Proximal3.851547.52358K562UCHL5
chr22398070323980829-CDS,intron-Distal5.652309.32793HepG2BCLAF1
chr22410356124103626-CDS,intron-Distal,intron-Proximal3.570124.57186K562TRA2A
chr22408637124086431-CDS,intron-Distal,intron-Proximal3.998023.33054K562U2AF1
chr22411081324110853-CDS,intron-Distal4.483404.90367K562ZNF622
chr22408636524086433-CDS,intron-Distal,intron-Proximal3.247893.42396HepG2U2AF2
chr22410351024103566-CDS,intron-Distal3.518237.39639K562ZNF622
chr22409070424090817-CDS,intron-Distal,intron-Proximal3.248217.90354K562DDX24
chr22410359224103628-CDS,intron-Distal,intron-Proximal4.456838.63879K562UCHL5
chr22404613524046199-CDS,intron-Distal3.196134.30396K562UCHL5
chr22410763124107681-CDS,intron-Distal,intron-Proximal4.147917.23632K562UCHL5
chr22408759424087697-CDS,intron-Distal,intron-Proximal3.056294.91112K562KHSRP
chr22410356624103625-CDS,intron-Distal3.8405210.79178K562ZNF622
chr22405678924056816-CDS,intron-Distal4.031833.20027K562ZNF622
chr22405684124056925-CDS,intron-Distal3.045505.53494HepG2BCLAF1
chr22410763424107655-CDS,intron-Distal,intron-Proximal4.381363.89826HepG2BCLAF1
chr22410859724108701-CDS,intron-Distal,intron-Proximal3.549055.35682HepG2GRWD1
chr22410763124107677-CDS,intron-Distal,intron-Proximal4.488398.50824K562ZNF622
chr22410350524103555-CDS,intron-Distal,intron-Proximal5.229547.02609K562UCHL5
chr22400889524009064-CDS,intron-Distal,intron-Proximal3.820497.03378HepG2GRWD1
chr22414954224149593-CDS,intron-Distal4.026837.20018HepG2XPO5
chr22404615324046296-CDS,intron-Distal,intron-Proximal3.596635.35682HepG2GRWD1
chr22410351224103574-CDS,intron-Distal3.975663.56019HepG2GRWD1
chr22402100224021051-CDS,intron-Distal,intron-Proximal4.098717.65975HepG2BCLAF1
chr22409871624098769-CDS,intron-Distal4.938446.58593HepG2BCLAF1
chr22408635824086435-CDS,intron-Distal,intron-Proximal4.743527.77851K562U2AF2
chr22409870024098775-CDS,intron-Distal,intron-Proximal3.961939.36792K562ZNF622
chr22405151824051741-CDS,intron-Distal,intron-Proximal3.609106.18396K562KHSRP
chr22408774024087811-CDS,intron-Distal,intron-Proximal3.228864.81700HepG2U2AF2
chr22410859824108691-CDS,intron-Distal3.396638.10579K562ZNF622
chr22409071024090816-CDS,intron-Distal,intron-Proximal4.4127212.88094HepG2BCLAF1
chr22410355524103592-CDS,intron-Distal4.820094.72838K562UCHL5
chr22409070724090814-CDS,intron-Distal,intron-Proximal3.5258118.51601K562ZNF622
chr22411075824110802-CDS,intron-Distal4.881336.29310K562ZNF622
chr22410767724107742-CDS,intron-Distal5.059406.29310K562ZNF622
chr22397701323977073-CDS,intron-Distal,intron-Proximal3.308433.67092K562PRPF8
chr22409069924090817-CDS,intron-Distal,intron-Proximal4.6346814.19321K562UCHL5
chr22401148524011609-CDS,intron-Distal,intron-Proximal3.629956.80241K562KHSRP
chr22397715623977175-CDS,intron-Distal4.599413.89826HepG2BCLAF1
chr22404634724046441-CDS,intron-Distal,intron-Proximal3.357824.76953K562DDX24
chr22408773724087812-CDS,intron-Distal,intron-Proximal3.769573.56057K562U2AF2
chr22405679224056830-CDS,intron-Distal3.138083.94979HepG2BCLAF1
chr22410350924103557-CDS,intron-Distal3.957784.46864HepG2BCLAF1
chr22409869324098740-CDS,intron-Distal,intron-Proximal3.240685.37652K562BUD13
chr22404265224042743-CDS,intron-Distal,intron-Proximal4.1633910.57092HepG2BCLAF1
chr22403329124033373-CDS,intron-Distal,intron-Proximal3.488136.50801HepG2BCLAF1
chr22410358324103626-CDS,intron-Distal,intron-Proximal4.574775.01214HepG2BUD13
chr22409874024098775-CDS,intron-Distal,intron-Proximal3.353933.39477K562BUD13
chr22407201324072165-intron-Distal3.316626.18396K562KHSRP
chr22408018324080246-intron-Distal,intron-Proximal3.629514.71867K562TIA1
chr22401928724019368-intron-Distal3.825758.67954K562KHSRP
chr22406657424066620-intron-Distal4.063243.62238HepG2MATR3
chr22407829824078372-intron-Distal3.259473.68839K562KHSRP
chr22404650024046635-intron-Distal,intron-Proximal4.366074.72162K562KHSRP
chr22406722424067359-intron-Distal3.745615.95946K562KHSRP
chr22407812124078205-intron-Distal3.394453.07751K562KHSRP
chr22404101524041113-intron-Distal5.584414.32196HepG2PCBP2
chr22406569524065765-intron-Distal3.339983.35050HepG2SUGP2
chr22408643824086494-intron-Distal,intron-Proximal4.643395.63851K562SF3B4
chr22404877724048846-intron-Distal3.827803.45805K562KHSRP
chr22408019724080249-intron-Distal,intron-Proximal3.682553.07706HepG2TIAL1
chr22402086324020960-intron-Distal,intron-Proximal4.549065.62025K562KHSRP
chr22401814724018162-intron-Distal3.109103.46531K562KHSRP
chr22407824024078298-intron-Distal4.190724.10688K562KHSRP
chr22405668224056749-intron-Distal,intron-Proximal3.301433.46531K562KHSRP
chr22410031924100394-intron-Distal5.377867.79030HepG2PCBP2
chr22400524924005333-intron-Distal3.214916.00234K562KHSRP
chr22405927524059325-intron-Distal4.073353.15006K562RBM15
chr22408042924080568-intron-Distal,intron-Proximal4.316623.02234K562KHSRP
chr22401922524019309-intron-Distal4.516265.60990HepG2KHSRP
chr22406560224065677-intron-Distal3.361873.84025HepG2SUGP2
chr22406707124067117-intron-Distal4.127163.62366HepG2HNRNPM
chr22401902524019086-intron-Distal3.519554.30679K562KHSRP
chr22408753624087583-intron-Distal,intron-Proximal3.868263.24603K562KHSRP
chr22413597124136043-intron-Distal3.881263.02234K562KHSRP
chr22397634523976411-intron-Distal3.786894.79983HepG2U2AF2
chr22401922624019287-intron-Distal4.089107.05443K562KHSRP
chr22400533324005384-intron-Distal4.109103.02234K562KHSRP
chr22401993724020029-intron-Distal4.689044.54401K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ATAD2B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ATAD2B is not available on ENCORE database.

  • 62 RBPs can affect the levels of ATAD2B.  








The Knockdown/knockout RNA-Seq assay for ATAD2B is not available on ENCORE database.





62 RBPs can affect the gene expression of ATAD2B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ATAD2BENSG00000119778.10458.72290613.45390-0.419303.966503.26310HepG2ACO1
ATAD2BENSG00000119778.10885.13220657.130800.429603.708702.83370HepG2CALR
ATAD2BENSG00000119778.10470.30360613.36400-0.383203.537202.80110HepG2CKAP4
ATAD2BENSG00000119778.10470.12310744.77640-0.663805.717604.76230HepG2CPSF6
ATAD2BENSG00000119778.10455.85060705.03990-0.629107.900106.91830HepG2CELF1
ATAD2BENSG00000119778.101160.34790676.484900.778308.291807.25910HepG2DDX3X
ATAD2BENSG00000119778.10444.14450567.01010-0.352302.496601.82430HepG2DNAJC21
ATAD2BENSG00000119778.10534.21900405.322800.398302.175201.36440HepG2EIF3D
ATAD2BENSG00000119778.10615.04950479.981500.357602.298601.31200HepG2EIF3G
ATAD2BENSG00000119778.10995.57130747.925900.412504.249503.25430HepG2EIF4G1
ATAD2BENSG00000119778.101234.031101035.959300.252302.181901.63630HepG2ETF1
ATAD2BENSG00000119778.10538.19500386.506700.477503.289602.43720HepG2FUBP3
ATAD2BENSG00000119778.10337.04290541.95540-0.685202.638401.64410HepG2GNB2L1
ATAD2BENSG00000119778.10493.15220636.73800-0.368702.176101.55300HepG2HNRNPC
ATAD2BENSG00000119778.10498.19120690.78210-0.471503.854403.06780HepG2HNRNPL
ATAD2BENSG00000119778.10458.53140632.52820-0.464104.644503.87600HepG2HNRNPU
ATAD2BENSG00000119778.10412.71340560.80080-0.442304.265803.01220HepG2KIF1C
ATAD2BENSG00000119778.10887.91300623.094400.510903.797603.02920HepG2MAGOH
ATAD2BENSG00000119778.10930.28760626.585700.570104.130303.37420HepG2MATR3
ATAD2BENSG00000119778.10977.61680641.348500.608104.995904.15500HepG2NCBP2
ATAD2BENSG00000119778.10839.32440571.177500.555204.264703.38040HepG2PABPC4
ATAD2BENSG00000119778.10387.06790564.16430-0.543505.122204.14770HepG2PPIL4
ATAD2BENSG00000119778.10766.10070554.838900.465404.962803.95810HepG2PRPF4
ATAD2BENSG00000119778.10786.92320554.390500.505205.525304.80770HepG2PTBP1
ATAD2BENSG00000119778.10457.85510717.69550-0.648502.843802.23980HepG2PUF60
ATAD2BENSG00000119778.101063.02380600.393500.8241013.4671012.23930HepG2QKI
ATAD2BENSG00000119778.101001.63380570.159900.812802.914202.19230HepG2RAVER1
ATAD2BENSG00000119778.101076.73560865.854300.314402.605102.09840HepG2RBM22
ATAD2BENSG00000119778.10753.30800544.905200.467103.896703.10760HepG2RBM25
ATAD2BENSG00000119778.10905.39170616.973600.553206.980206.18960HepG2NELFE
ATAD2BENSG00000119778.10725.10500574.644800.335402.749102.13420HepG2RECQL
ATAD2BENSG00000119778.10541.92380810.18970-0.580203.644402.72680HepG2RPS3A
ATAD2BENSG00000119778.10422.87650563.29320-0.413603.611902.89260HepG2SAFB2
ATAD2BENSG00000119778.101832.75780855.769001.098605.783404.78690HepG2SF3A3
ATAD2BENSG00000119778.10628.24770887.33990-0.498202.452201.71730HepG2SNRNP70
ATAD2BENSG00000119778.101309.31400977.922400.420905.962505.30450HepG2SRFBP1
ATAD2BENSG00000119778.101094.20500602.450100.8609017.4415016.46820HepG2SRSF1
ATAD2BENSG00000119778.10531.80990657.25860-0.305602.373001.72490HepG2SRSF7
ATAD2BENSG00000119778.101136.53170849.019000.420705.395104.72570HepG2SSB
ATAD2BENSG00000119778.10313.79260491.44050-0.647204.333703.17050HepG2SUPT6H
ATAD2BENSG00000119778.10738.87640541.529600.448204.208003.53820HepG2TAF15
ATAD2BENSG00000119778.10795.86010497.566600.677508.145406.72430HepG2TIA1
ATAD2BENSG00000119778.10434.00320620.11400-0.514805.577104.82890HepG2TRIM56
ATAD2BENSG00000119778.10989.22780622.449100.668206.926205.94320HepG2U2AF1
ATAD2BENSG00000119778.101085.63410834.684800.379103.229802.65300HepG2ZNF622
ATAD2BENSG00000119778.101188.508201599.37380-0.428406.018804.34890K562CPEB4
ATAD2BENSG00000119778.10795.008001012.09300-0.348302.805402.01760K562CPSF6
ATAD2BENSG00000119778.102054.476401654.794300.312004.269903.48480K562DDX47
ATAD2BENSG00000119778.101052.00150761.478000.466202.996301.66120K562EEF2
ATAD2BENSG00000119778.10817.308301037.29230-0.343903.605902.20440K562EIF2S1
ATAD2BENSG00000119778.101063.97200787.890100.433302.881501.82520K562EIF3D
ATAD2BENSG00000119778.10675.57390888.50330-0.395303.769702.38860K562EIF4B
ATAD2BENSG00000119778.10839.004101226.30050-0.547605.734604.48500K562FIP1L1
ATAD2BENSG00000119778.10898.56210685.549000.390303.304201.82500K562FUS
ATAD2BENSG00000119778.10805.018201026.04270-0.350003.425902.76240K562FXR1
ATAD2BENSG00000119778.10875.521901359.43480-0.634806.218005.07900K562GRSF1
ATAD2BENSG00000119778.101184.386201495.52880-0.336502.942601.84940K562HNRNPL
ATAD2BENSG00000119778.10621.507501008.59560-0.698506.496704.97890K562HNRNPM
ATAD2BENSG00000119778.101239.596701662.67900-0.423603.918002.97480K562HSPD1
ATAD2BENSG00000119778.10987.993301229.24180-0.315202.574901.68700K562MATR3
ATAD2BENSG00000119778.10820.250201392.01570-0.7630010.294608.42600K562PPIG
ATAD2BENSG00000119778.101681.685302118.83030-0.333402.837902.01090K562PUF60
ATAD2BENSG00000119778.101815.162202208.19570-0.282802.980301.98650K562PUM2
ATAD2BENSG00000119778.101959.152701585.350500.305302.412801.89780K562PUS1
ATAD2BENSG00000119778.10807.833901173.07360-0.538206.156305.11050K562SRSF1
ATAD2BENSG00000119778.10821.309901187.30330-0.531704.469103.56530K562TARDBP
ATAD2BENSG00000119778.10878.094701145.26810-0.383203.457002.52710K562TIA1
ATAD2BENSG00000119778.101034.523301334.66750-0.367504.962104.03020K562UPF1
ATAD2BENSG00000119778.101520.497201187.552200.356505.302304.16760K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ATAD2B is not available on ENCORE database.





1 RBPs can affect the splicing of ATAD2B :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEATAD2BENSG00000119778.10chr2-240876782408779424086250240864252409070424090816-0.194000.004580.04325excludedK562AQR
A3SSATAD2BENSG00000119778.10chr2-2403318524033414240331852403337224042616240427820.130000.001740.01136longerK562AQR
A3SSATAD2BENSG00000119778.10chr2-2410763424107792241076342410774324108596241086990.085000.002660.01658longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ATAD2B is not avaliable on ENCORE database.