ZBTB48

General Information

Gene Name       : ZBTB48
Gene ID             : ENSG00000204859.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ZBTB48)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ZBTB48ENSG00000204859.124.776.725.74ENCSR000AEF
HepG2ZBTB48ENSG00000204859.1214.834.299.56ENCSR985KAT
K562ZBTB48ENSG00000204859.1229.3516.7323.04ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
ZBTB48Ribo-STAMP-293TshRNABGRSLV05-47,BGRSLV05-48BGRSLV05-1,BGRSLV05-2NotSatisfiedENCORE2
ZBTB48Ribo-STAMP-293TshRNABGRSLV07-37,BGRSLV07-38BGRSLV07-1,BGRSLV07-2NotSatisfiedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ZBTB48 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ZBTB48 RNA is bound by 9 proteins.  







eCLIP assay for ZBTB48 is not avaliable on ENCORE database.





9 proteins are bound to ZBTB48 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr166489806649074+3'-UTR,CDS4.605385.03717HepG2PABPN1
chr166485016648550+3'-UTR,CDS,intron-Proximal4.145824.49024K562AQR
chr166421226642243+5'-UTR,CDS4.934836.23323K562UCHL5
chr166472146647270+CDS,intron-Proximal5.8065210.98510K562SF3B4
chr166473506647383+CDS,intron-Proximal4.577074.13847K562AQR
chr166468396646905+CDS,intron-Proximal4.938587.02967HepG2PRPF8
chr166459436646002+CDS,intron-Proximal4.964545.17615K562AQR
chr166473206647378+CDS,intron-Proximal4.573683.85435K562PRPF8
chr166468446646890+CDS,intron-Proximal4.681374.09264K562AQR
chr166472646647351+CDS,intron-Proximal3.167933.73413HepG2PPIG
chr166460886646137+CDS,intron-Proximal3.658405.70278K562AQR
chr166423916642483+intron-Distal,intron-Proximal3.4198912.68992K562TIA1
chr166423706642496+intron-Distal,intron-Proximal4.2988812.85462K562AQR
chr166424386642514+intron-Distal,intron-Proximal3.2421413.36659K562PRPF8
chr166465136646583+intron-Distal5.072795.81375HepG2XPO5
chr166458946645966+intron-Proximal3.798783.01266HepG2SF3B4
chr166466656646742+intron-Proximal4.115755.68247K562SF3B4
chr166476996647750+intron-Proximal4.853345.17615K562AQR
chr166423826642458+intron-Proximal4.475033.88726HepG2TIAL1
chr166477126647764+intron-Proximal4.933877.53406K562TIA1
chr166423866642438+intron-Proximal3.027138.32451K562PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ZBTB48 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ZBTB48 is not available on ENCORE database.

  • 72 RBPs can affect the levels of ZBTB48.  








The Knockdown/knockout RNA-Seq assay for ZBTB48 is not available on ENCORE database.





72 RBPs can affect the gene expression of ZBTB48 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ZBTB48ENSG00000204859.7173.81440106.275800.709602.938401.91250HepG2ADAR
ZBTB48ENSG00000204859.7381.97550254.328000.586703.266702.41370HepG2ASCC1
ZBTB48ENSG00000204859.7291.49890167.221700.801603.083202.09220HepG2BCCIP
ZBTB48ENSG00000204859.7257.95940118.657301.120207.608906.67700HepG2BOP1
ZBTB48ENSG00000204859.7403.22970223.135800.853609.456108.37100HepG2CKAP4
ZBTB48ENSG00000204859.7171.93070108.978100.657702.833901.80400HepG2YBX3
ZBTB48ENSG00000204859.7314.71460206.425500.608304.827403.76590HepG2DDX19B
ZBTB48ENSG00000204859.7214.45610150.054900.515102.059601.46450HepG2DDX21
ZBTB48ENSG00000204859.7353.48820213.544900.727005.737804.82720HepG2DKC1
ZBTB48ENSG00000204859.7161.97130107.025500.597702.177501.54580HepG2DNAJC21
ZBTB48ENSG00000204859.7163.26670106.055500.622302.865102.20370HepG2DNAJC2
ZBTB48ENSG00000204859.7327.18870243.150100.428201.823001.32900HepG2EIF2S1
ZBTB48ENSG00000204859.7568.95170400.378900.506804.290803.57020HepG2ETF1
ZBTB48ENSG00000204859.7399.41010251.500600.667204.052103.25560HepG2G3BP1
ZBTB48ENSG00000204859.7201.47330123.460300.706402.721502.08520HepG2GPKOW
ZBTB48ENSG00000204859.7218.76830108.050501.017605.764104.87810HepG2HNRNPA1
ZBTB48ENSG00000204859.7265.62570173.403800.615203.373302.58780HepG2HNRNPF
ZBTB48ENSG00000204859.7447.99020254.670500.814706.215505.19750HepG2HNRNPK
ZBTB48ENSG00000204859.7204.50840117.822100.795503.423602.73190HepG2HNRNPLL
ZBTB48ENSG00000204859.7223.18600119.384000.902505.403204.57790HepG2HNRNPU
ZBTB48ENSG00000204859.7276.42960170.749800.694903.906303.05780HepG2IGF2BP1
ZBTB48ENSG00000204859.7185.15850121.948200.602402.862602.11910HepG2ILF2
ZBTB48ENSG00000204859.7312.82390220.128300.506902.100801.38520HepG2LARP4
ZBTB48ENSG00000204859.7387.45700279.154500.472902.233101.66120HepG2NCBP2
ZBTB48ENSG00000204859.7362.51460248.603600.544102.847002.11550HepG2PABPC4
ZBTB48ENSG00000204859.7246.39890136.954900.847204.135302.88220HepG2PCBP2
ZBTB48ENSG00000204859.7183.94590106.482500.788604.174103.28680HepG2PPIL4
ZBTB48ENSG00000204859.7222.51880126.732400.812003.056302.21130HepG2PRPF8
ZBTB48ENSG00000204859.7341.75630235.187300.539102.826202.22420HepG2PUF60
ZBTB48ENSG00000204859.7331.76630227.350200.545203.817203.11690HepG2PUS1
ZBTB48ENSG00000204859.7375.34100288.575900.379201.987501.44450HepG2QKI
ZBTB48ENSG00000204859.7203.26490129.882300.646102.345601.47480HepG2RPS10
ZBTB48ENSG00000204859.7270.82920172.785500.648302.778501.97720HepG2RPS2
ZBTB48ENSG00000204859.7328.77570159.695901.041706.689805.45420HepG2RPS3A
ZBTB48ENSG00000204859.7177.73370106.321600.741203.724902.99690HepG2SAFB2
ZBTB48ENSG00000204859.7205.62920135.048200.606502.394701.50850HepG2SMNDC1
ZBTB48ENSG00000204859.7234.38570129.753200.853003.381602.51280HepG2SNRNP70
ZBTB48ENSG00000204859.7240.64960170.375400.498102.186501.55920HepG2SRSF7
ZBTB48ENSG00000204859.7568.78330328.139600.7935010.314809.44570HepG2SSB
ZBTB48ENSG00000204859.7213.51960138.977600.619402.597701.53650HepG2STIP1
ZBTB48ENSG00000204859.7312.22830163.659100.931804.225103.41410HepG2SUPV3L1
ZBTB48ENSG00000204859.7397.39110202.570200.972004.167702.87680HepG2TBRG4
ZBTB48ENSG00000204859.7392.07390116.034901.7565024.5113023.30400HepG2TIAL1
ZBTB48ENSG00000204859.7188.91360117.038900.690602.969102.38940HepG2TRIM56
ZBTB48ENSG00000204859.7348.16610229.738700.599702.843301.95790HepG2TUFM
ZBTB48ENSG00000204859.7338.65310192.455100.815204.551003.75610HepG2U2AF1
ZBTB48ENSG00000204859.7348.84820243.155500.520602.072401.35370HepG2UBE2L3
ZBTB48ENSG00000204859.7259.42230149.772900.792402.602901.63000HepG2UPF2
ZBTB48ENSG00000204859.7234.50960143.049700.713003.191602.00420HepG2XPO5
ZBTB48ENSG00000204859.7365.88720161.105501.183307.653006.45840HepG2XRN2
ZBTB48ENSG00000204859.71931.65940877.259101.1387016.5897015.31190K562AQR
ZBTB48ENSG00000204859.7848.39610697.597300.282202.396001.78360K562DDX47
ZBTB48ENSG00000204859.7897.21390441.052201.0244013.1216010.95670K562EFTUD2
ZBTB48ENSG00000204859.7810.62090662.991200.289902.192501.54150K562EIF2S2
ZBTB48ENSG00000204859.7716.19220522.473100.454903.385402.48080K562EIF4A3
ZBTB48ENSG00000204859.7236.17570373.16100-0.659903.958502.58050K562FKBP4
ZBTB48ENSG00000204859.748.98460191.96840-1.970505.542404.46230K562G3BP2
ZBTB48ENSG00000204859.7395.38150274.080800.528502.177801.47160K562GPKOW
ZBTB48ENSG00000204859.71153.54420883.424600.384803.110702.31110K562GRSF1
ZBTB48ENSG00000204859.7562.30620769.87330-0.453303.915602.64020K562HNRNPA1
ZBTB48ENSG00000204859.7523.18570373.287900.486902.542101.57180K562IGF2BP2
ZBTB48ENSG00000204859.7521.92710392.050600.412702.707301.87730K562MAGOH
ZBTB48ENSG00000204859.7613.50550348.780400.814708.417806.67540K562PCBP2
ZBTB48ENSG00000204859.7638.21590409.469400.640203.471502.53710K562PPIG
ZBTB48ENSG00000204859.7672.60850429.197200.648005.042604.03120K562PRPF8
ZBTB48ENSG00000204859.7592.10730385.143800.620404.786803.55240K562PSIP1
ZBTB48ENSG00000204859.7600.23060365.115700.717106.862105.46960K562RBM22
ZBTB48ENSG00000204859.7644.69580437.110600.560503.448002.53370K562RPS19
ZBTB48ENSG00000204859.7929.99300697.965500.414004.228403.23490K562SF3A3
ZBTB48ENSG00000204859.7323.01230199.394400.695904.964103.80390K562SF3B4
ZBTB48ENSG00000204859.7577.43470373.458900.628604.248203.37960K562SRSF1
ZBTB48ENSG00000204859.7502.89090352.776100.511402.432801.45710K562SRSF5
ZBTB48ENSG00000204859.7631.61160377.901800.740904.889103.93450K562TARDBP
ZBTB48ENSG00000204859.7579.80370364.545500.669406.354405.04150K562TIA1
ZBTB48ENSG00000204859.7536.48280357.876600.584004.277302.87000K562TRA2A
ZBTB48ENSG00000204859.7923.91600749.982500.300802.835602.10820K562UPF1
ZBTB48ENSG00000204859.7655.00190447.883700.548303.860902.34180K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ZBTB48 is not available on ENCORE database.





4 RBPs can affect the splicing of ZBTB48 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
MXEZBTB48ENSG00000204859.7chr1+664060066413596645978664609066401076640196664675466468470.133000.015630.090561includedK562AQR
MXEZBTB48ENSG00000204859.7chr1+664211766423596646754664684766406006641359664726466473510.192000.000350.003631includedK562AQR
MXEZBTB48ENSG00000204859.7chr1+664060066413596645978664609066401076640196664675466468470.311000.000010.000821includedK562EFTUD2
MXEZBTB48ENSG00000204859.7chr1+664060066413596645978664609066401076640196664675466468470.251000.000220.005931includedK562HNRNPC
MXEZBTB48ENSG00000204859.7chr1+664060066413596645978664609066401076640196664675466468470.202000.002720.048561includedK562PRPF8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ZBTB48 is not avaliable on ENCORE database.