VPS72

General Information

Gene Name       : VPS72
Gene ID             : ENSG00000163159.12
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: VPS72)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878VPS72ENSG00000163159.1253.9452.9553.45ENCSR000AEF
HepG2VPS72ENSG00000163159.1234.3339.9237.12ENCSR985KAT
K562VPS72ENSG00000163159.1290.7288.4289.57ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for VPS72 is not avaliable on ENCORE database.



Proteins bound to RNA
  • VPS72 RNA is bound by 14 proteins.  







eCLIP assay for VPS72 is not avaliable on ENCORE database.





14 proteins are bound to VPS72 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1151148954151149020-3'-UTR,intron-Distal3.585673.16095HepG2U2AF2
chr1151148959151149074-3'-UTR,intron-Distal4.2148211.64729HepG2PTBP1
chr1151148955151149010-3'-UTR,intron-Distal3.439388.40205K562PABPC4
chr1151148985151149068-3'-UTR,intron-Distal3.462219.20645K562PCBP1
chr1151149003151149063-3'-UTR,intron-Distal4.2001420.72679K562PTBP1
chr1151149005151149094-3'-UTR,intron-Distal3.778089.35786K562TIA1
chr1151148961151149003-3'-UTR,intron-Distal4.4385119.62173K562PTBP1
chr1151148949151149005-3'-UTR,intron-Distal5.040348.04428K562TIA1
chr1151148962151149099-3'-UTR,intron-Distal4.068997.33240HepG2PCBP2
chr1151162529151162604-5'-UTR,CDS,intron-Distal3.678363.49944K562FTO
chr1151158273151158284-CDS,intron-Distal,intron-Proximal3.110837.79660K562YBX3
chr1151149437151149541-CDS,intron-Distal,intron-Proximal3.9706312.01630K562AQR
chr1151150503151150613-CDS,intron-Distal3.617665.73766K562YBX3
chr1151158267151158418-CDS,intron-Distal,intron-Proximal4.729596.03821HepG2GRWD1
chr1151158294151158358-CDS,intron-Distal4.359823.06595HepG2BCLAF1
chr1151158028151158068-CDS,intron-Distal4.078768.68374K562YBX3
chr1151158271151158371-CDS,intron-Distal,intron-Proximal3.8372310.13632K562UCHL5
chr1151158273151158411-CDS,intron-Distal,intron-Proximal3.452415.29881K562ZNF800
chr1151158280151158357-CDS,intron-Distal3.5643911.31544K562ZNF622
chr1151158068151158097-CDS,intron-Distal,intron-Proximal3.9739311.90805K562YBX3
chr1151149957151150028-intron-Distal3.179624.00631HepG2PTBP1
chr1151150431151150454-intron-Distal,intron-Proximal4.708599.08030K562AQR
chr1151149958151150029-intron-Distal5.3086812.52640K562PTBP1
chr1151150469151150476-intron-Distal,intron-Proximal4.206365.26367K562AQR
chr1151150454151150469-intron-Distal,intron-Proximal4.358796.01372K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for VPS72 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for VPS72 is not available on ENCORE database.

  • 43 RBPs can affect the levels of VPS72.  








The Knockdown/knockout RNA-Seq assay for VPS72 is not available on ENCORE database.





43 RBPs can affect the gene expression of VPS72 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
VPS72ENSG00000163159.7539.64410411.566600.390803.196702.55020HepG2ACO1
VPS72ENSG00000163159.71145.61390559.140501.0347011.7302010.70840HepG2AKAP1
VPS72ENSG00000163159.7408.94860556.95230-0.445602.663201.98680HepG2CPSF6
VPS72ENSG00000163159.7827.82840564.528200.552207.057606.12000HepG2CELF1
VPS72ENSG00000163159.7283.79790378.67210-0.416102.214301.40770HepG2DDX24
VPS72ENSG00000163159.7577.40650386.048300.580703.223102.39780HepG2DDX55
VPS72ENSG00000163159.7241.76810356.33540-0.559602.735501.63670HepG2AGO1
VPS72ENSG00000163159.7647.35030475.920900.443702.037501.44230HepG2EIF4B
VPS72ENSG00000163159.7409.36870573.63920-0.486703.082702.22430HepG2EIF4G2
VPS72ENSG00000163159.7426.99860307.017500.475803.066401.77150HepG2PKM
VPS72ENSG00000163159.7423.38540574.52740-0.440402.826302.22430HepG2PUF60
VPS72ENSG00000163159.7429.79750541.98530-0.334602.053301.50370HepG2QKI
VPS72ENSG00000163159.7820.46670607.900300.432503.850302.85780HepG2RBM15
VPS72ENSG00000163159.7884.25230532.811700.730705.379004.71620HepG2RBM22
VPS72ENSG00000163159.7632.89720361.280400.808806.857305.93760HepG2RPS19
VPS72ENSG00000163159.7407.32310294.537900.467602.038701.35360HepG2RRP9
VPS72ENSG00000163159.7486.38770396.685100.294001.910601.35810HepG2SAFB2
VPS72ENSG00000163159.7501.32210362.532300.467502.700801.77400HepG2SERBP1
VPS72ENSG00000163159.7404.85510521.01700-0.363902.495101.92920HepG2SF3B4
VPS72ENSG00000163159.7600.89220462.584100.377303.486502.77780HepG2SMN1
VPS72ENSG00000163159.7564.95090366.954300.622403.747702.62010HepG2SMNDC1
VPS72ENSG00000163159.7879.09510601.792300.546707.313106.60490HepG2SRFBP1
VPS72ENSG00000163159.7440.54550567.29030-0.364802.575101.96630HepG2SRSF5
VPS72ENSG00000163159.7599.83020723.92820-0.271302.019401.41420HepG2SRSF7
VPS72ENSG00000163159.7289.03360488.79220-0.758007.697206.83840HepG2TAF15
VPS72ENSG00000163159.7388.22060587.23530-0.597104.458703.56560HepG2TARDBP
VPS72ENSG00000163159.7567.82350432.773900.391702.805802.30280HepG2TIAL1
VPS72ENSG00000163159.7678.69990556.182700.287102.429501.90750HepG2ZNF622
VPS72ENSG00000163159.72073.047001627.673800.348805.054304.32620K562AGGF1
VPS72ENSG00000163159.72068.898501693.645200.288602.229201.64010K562AKAP8L
VPS72ENSG00000163159.72634.474201953.550200.431308.236407.19150K562DDX47
VPS72ENSG00000163159.72198.362801822.628700.270302.976402.06120K562DKC1
VPS72ENSG00000163159.7757.03040621.386900.284802.110801.40800K562EIF3G
VPS72ENSG00000163159.7980.24350777.313700.334502.424101.65460K562EIF4A3
VPS72ENSG00000163159.71783.974101462.240900.286802.150301.40040K562FIP1L1
VPS72ENSG00000163159.71059.28850808.374700.389904.249003.52210K562FXR1
VPS72ENSG00000163159.7392.37410689.18850-0.812705.770504.66480K562G3BP2
VPS72ENSG00000163159.72603.335601982.397700.393003.831802.89890K562HSPD1
VPS72ENSG00000163159.72102.078001660.025700.340502.832002.00070K562PPIG
VPS72ENSG00000163159.71133.84080823.440500.461403.397602.67040K562PTBP1
VPS72ENSG00000163159.72114.750801679.797000.332102.606202.07560K562PUS1
VPS72ENSG00000163159.72052.599901636.571800.326702.255101.71040K562RBM15
VPS72ENSG00000163159.71210.39130853.689500.503603.824602.86090K562RPS19
VPS72ENSG00000163159.71221.15900960.680700.346002.699501.69190K562SRFBP1
VPS72ENSG00000163159.71090.30400807.284100.433504.129903.27350K562SRSF1
VPS72ENSG00000163159.71064.22140816.942700.381402.786102.07660K562TARDBP
VPS72ENSG00000163159.71376.145401068.277200.365202.504601.61880K562TIAL1
VPS72ENSG00000163159.71547.010301134.977200.446704.312103.07220K562TRIM56
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for VPS72 is not available on ENCORE database.





6 RBPs can affect the splicing of VPS72 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEVPS72ENSG00000163159.7chr1-151157981151158096151156792151156969151158273151158426-0.063000.000190.00536excludedK562SF3B4
SEVPS72ENSG00000163159.7chr1-151157981151158096151156792151156969151158273151158426-0.076000.003320.05494excludedHepG2U2AF1
SEVPS72ENSG00000163159.7chr1-151157981151158120151156792151156969151158273151158426-0.067000.000170.00267excludedK562AQR
SEVPS72ENSG00000163159.7chr1-151157981151158120151156792151156969151158273151158426-0.070000.003210.05789excludedK562U2AF1
SEVPS72ENSG00000163159.7chr1-151157981151158096151156792151156969151158273151158426-0.081000.000500.01758excludedHepG2SF3A3
SEVPS72ENSG00000163159.7chr1-151157981151158096151156792151156969151158273151158426-0.171000.000000.00000excludedK562SF3B1
SEVPS72ENSG00000163159.7chr1-151157981151158096151156792151156969151158273151158426-0.080000.000030.00095excludedK562HNRNPC
A3SSVPS72ENSG00000163159.7chr1-1511580151511581711511580151511580961511582731511584260.100000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for VPS72 is not avaliable on ENCORE database.