VPS36

General Information

Gene Name       : VPS36
Gene ID             : ENSG00000136100.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: VPS36)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878VPS36ENSG00000136100.1322.4718.1520.31ENCSR000AEF
HepG2VPS36ENSG00000136100.1310.4419.2014.82ENCSR985KAT
K562VPS36ENSG00000136100.1316.2718.9017.59ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for VPS36 is not avaliable on ENCORE database.



Proteins bound to RNA
  • VPS36 RNA is bound by 14 proteins.  







eCLIP assay for VPS36 is not avaliable on ENCORE database.





14 proteins are bound to VPS36 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr135298868852988801-3'-UTR,intron-Distal3.932773.60656K562NOLC1
chr135302463853024764-5'-UTR,CDS,intron-Distal,intron-Proximal3.290985.42487HepG2NCBP2
chr135302463653024754-5'-UTR,CDS,intron-Distal4.960175.47892K562DDX3X
chr135302463253024749-5'-UTR,CDS,intron-Distal3.582724.06531HepG2GRWD1
chr135302469153024756-5'-UTR,CDS,intron-Distal4.101844.81156HepG2SRSF1
chr135299204252992182-CDS,intron-Distal,intron-Proximal3.627143.88924K562PRPF8
chr135299773352997785-CDS,intron-Distal,intron-Proximal4.185133.45799HepG2U2AF2
chr135301051153010540-CDS,intron-Distal,intron-Proximal3.567343.68471HepG2BCLAF1
chr135301042853010497-CDS,intron-Distal4.041143.53690K562ZNF622
chr135301323253013303-CDS,intron-Distal,intron-Proximal5.169648.65687HepG2PPIG
chr135300017253000258-CDS,intron-Distal,intron-Proximal5.8676710.47189K562SF3B4
chr135300129253001392-CDS,intron-Distal,intron-Proximal4.185267.95190HepG2AQR
chr135299208052992129-CDS,intron-Distal,intron-Proximal4.027315.63763K562AQR
chr135300132353001372-CDS,intron-Distal,intron-Proximal3.761624.09885HepG2BCLAF1
chr135300775153007822-CDS,intron-Distal,intron-Proximal3.294783.73423K562UCHL5
chr135301651153016577-CDS,intron-Distal,intron-Proximal3.581603.61259K562ZNF622
chr135301323153013300-CDS,intron-Distal,intron-Proximal3.911826.39464HepG2BCLAF1
chr135300780253007886-CDS,intron-Distal,intron-Proximal5.6523010.47286HepG2BCLAF1
chr135301651053016569-CDS,intron-Distal,intron-Proximal3.927553.82000HepG2GRWD1
chr135301035853010460-CDS,intron-Distal,intron-Proximal4.657474.35676HepG2PRPF8
chr135300892453009013-CDS,intron-Distal,intron-Proximal4.7230411.09109HepG2BCLAF1
chr135299015052990202-CDS,intron-Distal,intron-Proximal4.703955.24929K562ZNF622
chr135300003353000089-CDS,intron-Distal,intron-Proximal5.037624.02817HepG2PRPF8
chr135300011553000203-CDS,intron-Distal,intron-Proximal3.112727.75306HepG2BCLAF1
chr135299987752999973-intron-Distal,intron-Proximal4.224583.45805K562KHSRP
chr135300758853007678-intron-Distal3.209315.67580HepG2U2AF2
chr135300380053003870-intron-Distal3.431655.25527HepG2U2AF2
chr135300388653003987-intron-Distal3.311326.02054K562KHSRP
chr135300772453007796-intron-Distal,intron-Proximal3.761624.46864HepG2BCLAF1
chr135300709853007185-intron-Distal5.104077.58902K562KHSRP
chr135299139052991468-intron-Distal5.176606.27552K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for VPS36 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for VPS36 is not available on ENCORE database.

  • 67 RBPs can affect the levels of VPS36.  








The Knockdown/knockout RNA-Seq assay for VPS36 is not available on ENCORE database.





67 RBPs can affect the gene expression of VPS36 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
VPS36ENSG00000136100.81342.33150814.743300.720206.623405.83960HepG2AKAP1
VPS36ENSG00000136100.8901.29970729.218400.305601.935801.42790HepG2BOP1
VPS36ENSG00000136100.8913.26500691.118100.402003.342202.50440HepG2CALR
VPS36ENSG00000136100.8748.562101086.36190-0.537303.536602.41990HepG2CCAR1
VPS36ENSG00000136100.8840.77470640.472000.392502.500001.76020HepG2CIRBP
VPS36ENSG00000136100.8511.41860747.82550-0.548202.730701.97140HepG2CNOT7
VPS36ENSG00000136100.8662.975301068.61400-0.6887013.4149011.98790HepG2DAZAP1
VPS36ENSG00000136100.8742.77710544.425300.448103.308402.57110HepG2DDX21
VPS36ENSG00000136100.81212.22020780.464100.635105.932805.04950HepG2DDX3X
VPS36ENSG00000136100.8429.09000670.43100-0.643804.426103.65920HepG2DDX6
VPS36ENSG00000136100.8462.27800583.10660-0.335002.857702.19680HepG2DNAJC2
VPS36ENSG00000136100.8914.93740693.477700.399701.927901.34700HepG2EIF4B
VPS36ENSG00000136100.81490.382401212.953300.297103.287802.64150HepG2ETF1
VPS36ENSG00000136100.8709.45680457.576200.632605.963904.83070HepG2FUBP3
VPS36ENSG00000136100.8882.28760660.664500.417203.072002.34640HepG2HNRNPC
VPS36ENSG00000136100.8884.66980675.025200.390102.636001.95340HepG2HNRNPK
VPS36ENSG00000136100.8680.59790973.39470-0.516207.611006.54230HepG2HNRNPL
VPS36ENSG00000136100.8456.13150724.24290-0.667005.551204.69160HepG2HNRNPLL
VPS36ENSG00000136100.8640.22280796.91610-0.315902.034201.40730HepG2IGF2BP1
VPS36ENSG00000136100.8468.90020677.62450-0.531203.697402.92590HepG2IGF2BP2
VPS36ENSG00000136100.8964.45600681.572500.500703.031601.97630HepG2KHSRP
VPS36ENSG00000136100.8691.341001146.55610-0.729806.256304.99860HepG2LARP4
VPS36ENSG00000136100.8559.86800722.90620-0.368701.863201.34020HepG2MATR3
VPS36ENSG00000136100.8822.31090661.425800.314002.334901.58810HepG2MSI2
VPS36ENSG00000136100.8753.373301059.64090-0.492105.528504.45660HepG2NOL12
VPS36ENSG00000136100.8913.08460658.964100.470403.291602.50770HepG2PABPC4
VPS36ENSG00000136100.8908.19550693.453600.389104.263803.61630HepG2PTBP1
VPS36ENSG00000136100.8686.294601011.54820-0.559705.627204.81650HepG2PUF60
VPS36ENSG00000136100.8650.988701073.83600-0.7221015.3960014.22860HepG2PUM1
VPS36ENSG00000136100.8831.27080693.086600.262202.206101.64140HepG2PUS1
VPS36ENSG00000136100.81040.99250750.981000.471005.143404.33160HepG2QKI
VPS36ENSG00000136100.81529.54860682.673401.1637010.123208.83790HepG2RAVER1
VPS36ENSG00000136100.81683.202801013.797000.7313014.6163013.61540HepG2RBM22
VPS36ENSG00000136100.8992.98880681.581000.542805.755704.81540HepG2RBM25
VPS36ENSG00000136100.8898.55120718.793700.321902.973602.33730HepG2RECQL
VPS36ENSG00000136100.8650.00480871.66740-0.423303.087802.37270HepG2RPLP0
VPS36ENSG00000136100.8352.36520477.41400-0.438202.627902.02770HepG2RPS19
VPS36ENSG00000136100.8463.99740967.18110-1.059703.374701.83870HepG2SF1
VPS36ENSG00000136100.8530.91530716.86770-0.433202.919202.19400HepG2SF3B1
VPS36ENSG00000136100.8963.76340721.935700.416703.414002.76570HepG2SF3B4
VPS36ENSG00000136100.81002.78310753.560500.412104.699604.12480HepG2SRSF1
VPS36ENSG00000136100.8858.02130677.373800.341002.946402.37000HepG2TAF15
VPS36ENSG00000136100.8887.76780698.972400.344802.364801.77970HepG2U2AF1
VPS36ENSG00000136100.8596.95860794.25270-0.412004.270003.55160HepG2UTP3
VPS36ENSG00000136100.81516.394101209.381800.326303.784003.13880K562AGGF1
VPS36ENSG00000136100.8883.852101505.89910-0.7687010.186109.16860K562AQR
VPS36ENSG00000136100.8645.08130886.37030-0.458405.250003.91060K562BCLAF1
VPS36ENSG00000136100.8311.69950445.97970-0.516803.201902.04970K562CCAR1
VPS36ENSG00000136100.8942.885401476.23960-0.646803.832002.54480K562CNOT7
VPS36ENSG00000136100.8659.22570895.20100-0.441403.889102.96030K562CPSF6
VPS36ENSG00000136100.8502.25670672.44370-0.421003.412702.22010K562CSTF2
VPS36ENSG00000136100.8973.53980745.926300.384103.158902.03950K562DDX3X
VPS36ENSG00000136100.81754.565801402.114300.323404.367003.57410K562DDX47
VPS36ENSG00000136100.82280.616301746.066400.385205.932104.57660K562EIF4G2
VPS36ENSG00000136100.8579.54150772.05730-0.413802.603501.71990K562FTO
VPS36ENSG00000136100.81175.90480858.749400.453402.763202.05610K562G3BP2
VPS36ENSG00000136100.8530.95100854.68590-0.686807.436006.13080K562GPKOW
VPS36ENSG00000136100.81179.278701514.01370-0.360503.128002.32590K562GRSF1
VPS36ENSG00000136100.8502.74870877.28970-0.8032010.002908.92510K562HNRNPC
VPS36ENSG00000136100.8780.896301267.11900-0.698309.824907.73130K562HNRNPL
VPS36ENSG00000136100.81885.801401467.003000.362202.916402.10030K562HSPD1
VPS36ENSG00000136100.8687.661001035.56220-0.590604.544103.09640K562IGF2BP2
VPS36ENSG00000136100.81721.262101335.552100.365902.198901.47380K562KIF1C
VPS36ENSG00000136100.8638.90760849.30050-0.410703.088901.60480K562LARP7
VPS36ENSG00000136100.8775.685901086.29530-0.485905.069503.77560K562MATR3
VPS36ENSG00000136100.81220.802401496.14420-0.293402.682801.79100K562MBNL1
VPS36ENSG00000136100.8563.347301149.95780-1.029506.064404.42170K562PABPN1
VPS36ENSG00000136100.81382.632701057.516800.386603.891303.11650K562PTBP1
VPS36ENSG00000136100.81339.343002026.19370-0.597209.605407.54850K562PUM1
VPS36ENSG00000136100.82084.185901248.149100.739609.844008.86830K562PUS1
VPS36ENSG00000136100.81283.03340819.390900.646803.847802.13630K562RAVER1
VPS36ENSG00000136100.8526.82890717.52490-0.445703.530702.41260K562RCC2
VPS36ENSG00000136100.8635.198201051.92420-0.727802.500201.37970K562SF1
VPS36ENSG00000136100.8478.90410812.87580-0.763306.721005.16530K562SF3B1
VPS36ENSG00000136100.8763.111801282.78980-0.749303.250701.79700K562SFPQ
VPS36ENSG00000136100.8722.10180919.70410-0.349003.418202.10730K562SRSF7
VPS36ENSG00000136100.8800.516301049.24600-0.390402.882802.16150K562TARDBP
VPS36ENSG00000136100.8792.852201012.10700-0.352202.931202.08620K562TIA1
VPS36ENSG00000136100.8562.70990803.61720-0.514104.296803.06020K562TRIM56
VPS36ENSG00000136100.81262.867101025.991000.299603.616102.65750K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for VPS36 is not available on ENCORE database.





14 RBPs can affect the splicing of VPS36 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEVPS36ENSG00000136100.8chr13-530011235300120153000066530002015300132153001354-0.151000.004740.07282excludedHepG2U2AF1
SEVPS36ENSG00000136100.8chr13-530011235300120153000066530002015300132153001354-0.097000.000210.00910excludedK562AKAP8L
SEVPS36ENSG00000136100.8chr13-530011235300120153000066530002015300132153001354-0.280000.000010.00036excludedHepG2U2AF2
SEVPS36ENSG00000136100.8chr13-5300337053003567530013215300135453007796530078830.188000.005260.04846includedK562AQR
SEVPS36ENSG00000136100.8chr13-530013215300135453001123530012015300779653007938-0.190000.001290.01518excludedK562AQR
SEVPS36ENSG00000136100.8chr13-529921265299219152991191529912765299770852997774-0.114000.009010.07474excludedK562AQR
SEVPS36ENSG00000136100.8chr13-529911915299127652990151529902285300006653000201-0.121000.001470.02343excludedK562PUS1
SEVPS36ENSG00000136100.8chr13-530033705300356753001321530013545300779653007883-0.113000.003090.04285excludedK562PUS1
SEVPS36ENSG00000136100.8chr13-5300337053003567530013215300135453007796530078830.341000.001480.07868includedHepG2FTO
SEVPS36ENSG00000136100.8chr13-5300337053003567530013215300135453007796530078830.166000.000520.02573includedHepG2MATR3
SEVPS36ENSG00000136100.8chr13-5300337053003567530013215300135453007796530078830.164000.000890.02046includedK562U2AF1
SEVPS36ENSG00000136100.8chr13-530011235300120153000066530002015300132153001354-0.221000.000000.00004excludedK562U2AF1
SEVPS36ENSG00000136100.8chr13-529921265299219152991191529912765299770852997774-0.164000.001880.03768excludedK562U2AF1
SEVPS36ENSG00000136100.8chr13-5300337053003567530013215300135453007796530078830.182000.000140.01758includedHepG2DDX6
SEVPS36ENSG00000136100.8chr13-5300337053003567530013215300135453007796530078830.170000.001410.08181includedK562HNRNPL
SEVPS36ENSG00000136100.8chr13-530033705300356753001321530013545300779653007883-0.143000.000100.02552excludedHepG2RBM15
SEVPS36ENSG00000136100.8chr13-530011235300120152999904530002015300132153001354-0.089000.002200.05633excludedHepG2SF3A3
SEVPS36ENSG00000136100.8chr13-5300337053003567530013215300135453007796530078830.234000.000010.00054includedK562U2AF2
SEVPS36ENSG00000136100.8chr13-530011235300120153000066530002015300132153001354-0.350000.000000.00000excludedK562U2AF2
SEVPS36ENSG00000136100.8chr13-530011235300120153000066530002015300132153001354-0.143000.000300.01465excludedK562TARDBP
SEVPS36ENSG00000136100.8chr13-530011235300120153000066530002015300132153001354-0.092000.000110.00483excludedK562RBM15
SEVPS36ENSG00000136100.8chr13-530033705300356753001321530013545300779653007883-0.092000.000230.04054excludedK562ZC3H8
A3SSVPS36ENSG00000136100.8chr13-5301042453010573530104245301053953013232530133030.057000.001800.01173longerK562AQR
A3SSVPS36ENSG00000136100.8chr13-5301323253013368530132325301330353016511530165800.064000.000730.00527longerK562AQR
MXEVPS36ENSG00000136100.8chr13-53001123530012015300337053003567529999045300020153007796530078830.119000.005780.040641includedK562AQR
MXEVPS36ENSG00000136100.8chr13-53001321530013545300337053003567529999045300020153007796530078830.207000.000210.002321includedK562AQR
MXEVPS36ENSG00000136100.8chr13-52992126529921915299770852997774529911915299127653000066530002010.289000.000060.001731includedK562U2AF2
MXEVPS36ENSG00000136100.8chr13-5299212652992191529977085299777452991191529912765300006653000201-0.172000.004210.057772includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for VPS36 is not avaliable on ENCORE database.