TSPAN31

General Information

Gene Name       : TSPAN31
Gene ID             : ENSG00000135452.9
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: TSPAN31)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TSPAN31ENSG00000135452.917.0616.7916.92ENCSR000AEF
HepG2TSPAN31ENSG00000135452.97.0410.148.59ENCSR985KAT
K562TSPAN31ENSG00000135452.912.7413.7813.26ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TSPAN31 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TSPAN31 RNA is bound by 4 proteins.  







eCLIP assay for TSPAN31 is not avaliable on ENCORE database.





4 proteins are bound to TSPAN31 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr125814098258141030+3'-UTR,CDS,intron-Proximal3.206663.76090HepG2U2AF2
chr125814135558141427+3'-UTR4.419094.36811K562FAM120A
chr125814134958141412+3'-UTR3.852493.19668HepG2UPF1
chr125814153958141581+3'-UTR3.321993.55461K562UPF1
chr125814132858141420+3'-UTR4.168737.49447K562UPF1
chr125813882958138915+5'-UTR,intron-Distal4.137723.58858HepG2NCBP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TSPAN31 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TSPAN31 is not available on ENCORE database.

  • 70 RBPs can affect the levels of TSPAN31.  








The Knockdown/knockout RNA-Seq assay for TSPAN31 is not available on ENCORE database.





70 RBPs can affect the gene expression of TSPAN31 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TSPAN31ENSG00000135452.5154.27460299.32460-0.956205.202704.42150HepG2ACO1
TSPAN31ENSG00000135452.5752.34360542.652000.471302.663002.14120HepG2AKAP1
TSPAN31ENSG00000135452.5206.85820300.79900-0.540202.824202.05050HepG2AKAP8L
TSPAN31ENSG00000135452.5407.31610242.468900.748204.262303.03940HepG2CCAR1
TSPAN31ENSG00000135452.5299.71240426.57700-0.509202.767601.99510HepG2CIRBP
TSPAN31ENSG00000135452.5209.04920299.34140-0.517902.523101.88260HepG2CKAP4
TSPAN31ENSG00000135452.5493.70070330.292000.579802.569101.83320HepG2CNOT7
TSPAN31ENSG00000135452.5265.58160106.288501.321109.751608.53700HepG2CPSF6
TSPAN31ENSG00000135452.5142.66780209.93020-0.557302.576301.59720HepG2YBX3
TSPAN31ENSG00000135452.5255.05010348.97480-0.452302.796102.15050HepG2CELF1
TSPAN31ENSG00000135452.5522.71160375.260800.478004.391003.49110HepG2DAZAP1
TSPAN31ENSG00000135452.5181.47780276.87000-0.609403.428502.51150HepG2DDX19B
TSPAN31ENSG00000135452.5225.01120143.568600.648203.041501.57770HepG2DDX28
TSPAN31ENSG00000135452.5203.86690519.80960-1.3504014.8590013.52280HepG2DDX3X
TSPAN31ENSG00000135452.5146.30630258.75730-0.822604.206303.09400HepG2EEF2
TSPAN31ENSG00000135452.5248.53610461.88520-0.894105.581504.62670HepG2EIF4B
TSPAN31ENSG00000135452.5185.20840292.56630-0.659603.382702.45860HepG2EWSR1
TSPAN31ENSG00000135452.5351.37950227.536800.626804.095402.74180HepG2FASTKD2
TSPAN31ENSG00000135452.5329.41400478.65130-0.539103.173602.43330HepG2FXR1
TSPAN31ENSG00000135452.566.68720187.01800-1.487708.700707.15670HepG2GEMIN5
TSPAN31ENSG00000135452.5170.91760279.13750-0.707703.311901.80760HepG2HNRNPA0
TSPAN31ENSG00000135452.5259.58470344.86230-0.409802.347401.47850HepG2HNRNPA2B1
TSPAN31ENSG00000135452.5430.73430231.477500.895807.272706.19080HepG2HNRNPC
TSPAN31ENSG00000135452.5203.66730449.63330-1.1425010.831509.53020HepG2HNRNPK
TSPAN31ENSG00000135452.5432.24520341.842100.338402.089601.49350HepG2HNRNPL
TSPAN31ENSG00000135452.5284.41230114.973001.306609.469808.38370HepG2HNRNPLL
TSPAN31ENSG00000135452.5355.88390229.946700.630005.085704.28400HepG2HNRNPU
TSPAN31ENSG00000135452.5312.13960451.31140-0.531903.146202.43180HepG2IGF2BP2
TSPAN31ENSG00000135452.5166.10540481.49290-1.5354016.0807014.65620HepG2MATR3
TSPAN31ENSG00000135452.5215.75110117.281000.879303.231702.17940HepG2MTPAP
TSPAN31ENSG00000135452.5261.22920492.83030-0.915807.442506.42820HepG2NCBP2
TSPAN31ENSG00000135452.5511.32660372.106400.458403.337602.50180HepG2NOL12
TSPAN31ENSG00000135452.5201.80730301.83720-0.580802.126601.36380HepG2PABPC1
TSPAN31ENSG00000135452.5338.05960227.601000.570703.947802.95510HepG2PARN
TSPAN31ENSG00000135452.5309.88360427.74580-0.465003.496802.83210HepG2PCBP1
TSPAN31ENSG00000135452.5102.23570248.93620-1.283906.020905.00760HepG2RAVER1
TSPAN31ENSG00000135452.5603.29670379.439200.668906.668905.94800HepG2RBM22
TSPAN31ENSG00000135452.5224.25800344.27970-0.618402.503101.56360HepG2RBM27
TSPAN31ENSG00000135452.5346.57650484.38440-0.483003.645403.04150HepG2NELFE
TSPAN31ENSG00000135452.5397.99880249.604300.673004.706703.84720HepG2RPLP0
TSPAN31ENSG00000135452.5121.33000204.39190-0.752403.668202.97010HepG2RPS19
TSPAN31ENSG00000135452.5318.82970204.774500.638704.767803.96130HepG2SAFB2
TSPAN31ENSG00000135452.5129.26810219.42790-0.763403.379102.63220HepG2SF3A3
TSPAN31ENSG00000135452.5203.05600113.794400.835303.813702.99610HepG2SF3B1
TSPAN31ENSG00000135452.5235.98030453.15940-0.9414010.402909.36740HepG2SF3B4
TSPAN31ENSG00000135452.5176.77660238.79620-0.433902.106101.53410HepG2SMN1
TSPAN31ENSG00000135452.5350.09200126.618401.4671010.029308.54900HepG2SNRNP70
TSPAN31ENSG00000135452.5201.14510472.98980-1.2336017.0335016.07160HepG2SRSF1
TSPAN31ENSG00000135452.5214.36890350.69820-0.710102.450201.85670HepG2SRSF5
TSPAN31ENSG00000135452.5334.34590227.666900.554304.111503.28950HepG2SRSF7
TSPAN31ENSG00000135452.5251.30120152.860000.717103.194601.87270HepG2STAU1
TSPAN31ENSG00000135452.5171.89290288.32580-0.746204.026302.67640HepG2STIP1
TSPAN31ENSG00000135452.5442.43930285.930300.629703.367501.89160HepG2SUGP2
TSPAN31ENSG00000135452.5211.32320154.528200.451502.142601.30910HepG2SUPT6H
TSPAN31ENSG00000135452.5374.64530188.648200.989706.477905.50950HepG2SUPV3L1
TSPAN31ENSG00000135452.5267.56220194.599400.459302.412501.75310HepG2UPF1
TSPAN31ENSG00000135452.5337.41750172.760300.965705.213503.81170HepG2UPF2
TSPAN31ENSG00000135452.5311.49920185.703300.746103.993403.13040HepG2XRN2
TSPAN31ENSG00000135452.5159.50880214.02150-0.424101.912201.43480HepG2ZNF622
TSPAN31ENSG00000135452.5216.31570310.86770-0.523203.274702.57530K562DDX47
TSPAN31ENSG00000135452.5152.74210240.81770-0.656803.079602.11400K562EFTUD2
TSPAN31ENSG00000135452.5392.58260288.214200.445802.954502.21510K562EIF2S2
TSPAN31ENSG00000135452.5158.89470257.84290-0.698403.267002.13580K562EIF3D
TSPAN31ENSG00000135452.5146.15110261.70090-0.840505.929704.77820K562EIF3G
TSPAN31ENSG00000135452.5350.79450484.92440-0.467103.629002.55520K562EIF4G2
TSPAN31ENSG00000135452.5151.60340247.82960-0.709004.339103.60560K562FXR1
TSPAN31ENSG00000135452.5149.73490241.43590-0.689203.214601.66240K562GEMIN5
TSPAN31ENSG00000135452.5467.88930246.898900.922108.245106.88540K562HSPD1
TSPAN31ENSG00000135452.5304.19310206.759500.556903.053502.18530K562PPIG
TSPAN31ENSG00000135452.5132.77130234.34340-0.819703.980503.08120K562PRPF8
TSPAN31ENSG00000135452.5235.04560364.67680-0.633704.329003.60370K562RBM15
TSPAN31ENSG00000135452.5154.41380322.34040-1.061808.874307.61640K562SRSF1
TSPAN31ENSG00000135452.5355.21510238.935000.572003.169101.69680K562SSRP1
TSPAN31ENSG00000135452.5353.29200280.276000.333901.908401.30410K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TSPAN31 is not available on ENCORE database.





3 RBPs can affect the splicing of TSPAN31 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A5SSTSPAN31ENSG00000135452.5chr12+5814037558140551581403755814050358140800581409140.080000.002580.04184longerK562AQR
RITSPAN31ENSG00000135452.5chr12+5813995858140503581399585814003958140371581405030.281000.000000.00001includedHepG2SF3B4
RITSPAN31ENSG00000135452.5chr12+581399585814050358139958581400395814037158140503-0.075000.007480.09616excludedK562PTBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TSPAN31 is not avaliable on ENCORE database.