TRIP4

General Information

Gene Name       : TRIP4
Gene ID             : ENSG00000103671.9
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: TRIP4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TRIP4ENSG00000103671.916.4215.4415.93ENCSR000AEF
HepG2TRIP4ENSG00000103671.910.4915.4412.96ENCSR985KAT
K562TRIP4ENSG00000103671.915.9815.7015.84ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
TRIP4Ribo-STAMP-293TshRNATRIP4-BGRSLV02-47,TRIP4-BGRSLV02-48NT-BGRSLV02-1,NT-BGRSLV02-2,SubmittedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TRIP4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TRIP4 RNA is bound by 4 proteins.  







eCLIP assay for TRIP4 is not avaliable on ENCORE database.





4 proteins are bound to TRIP4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr156468624664686315+5'-UTR,CDS,intron-Proximal4.319363.38968HepG2BCLAF1
chr156468004564680161+5'-UTR,CDS,intron-Distal,intron-Proximal3.767714.08283K562DDX3X
chr156468612264686215+CDS,intron-Proximal3.282515.10493HepG2AQR
chr156468016864680220+intron-Distal,intron-Proximal3.983074.04622HepG2GRWD1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TRIP4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TRIP4 is not available on ENCORE database.

  • 55 RBPs can affect the levels of TRIP4.  








The Knockdown/knockout RNA-Seq assay for TRIP4 is not available on ENCORE database.





55 RBPs can affect the gene expression of TRIP4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TRIP4ENSG00000103671.5542.77570349.992000.632907.163206.27910HepG2ACO1
TRIP4ENSG00000103671.5791.77680543.989800.541403.412202.82990HepG2AKAP1
TRIP4ENSG00000103671.5600.78660407.749100.559103.771002.56200HepG2AKAP8
TRIP4ENSG00000103671.5762.00930618.556600.300802.290101.65560HepG2AUH
TRIP4ENSG00000103671.5260.25890399.45010-0.618104.446203.49730HepG2CALR
TRIP4ENSG00000103671.5873.49490523.155200.7395011.8368010.68480HepG2CELF1
TRIP4ENSG00000103671.5505.23960328.458700.621204.599603.75010HepG2DDX21
TRIP4ENSG00000103671.5548.68000362.594000.597504.192703.26290HepG2DDX55
TRIP4ENSG00000103671.5645.76320447.644500.528603.076602.42830HepG2DDX6
TRIP4ENSG00000103671.5406.14080316.647200.359002.082801.46380HepG2DNAJC21
TRIP4ENSG00000103671.5454.57440302.279100.588502.391501.36660HepG2AGO1
TRIP4ENSG00000103671.5299.80490463.02340-0.627103.113902.38710HepG2EIF4B
TRIP4ENSG00000103671.5689.28650554.954900.312602.502601.69850HepG2EIF4G1
TRIP4ENSG00000103671.5403.81280531.60410-0.396702.146701.42310HepG2EIF4G2
TRIP4ENSG00000103671.5903.27420710.185500.346903.281502.63570HepG2ETF1
TRIP4ENSG00000103671.5596.51770423.247300.495002.593401.84580HepG2FIP1L1
TRIP4ENSG00000103671.5314.13890472.54200-0.589003.715202.67380HepG2G3BP2
TRIP4ENSG00000103671.5573.40070358.916000.675803.273801.75490HepG2HLTF
TRIP4ENSG00000103671.5288.57440401.44800-0.476302.408701.81600HepG2HNRNPLL
TRIP4ENSG00000103671.5405.21260292.053500.472302.934801.95530HepG2HNRNPM
TRIP4ENSG00000103671.5412.79840259.369200.670302.791501.73460HepG2METAP2
TRIP4ENSG00000103671.5516.79390342.597900.593004.464003.45320HepG2MSI2
TRIP4ENSG00000103671.5669.19050379.460900.818404.768003.58040HepG2PABPC1
TRIP4ENSG00000103671.5400.56280279.887800.517103.194302.33250HepG2PRPF8
TRIP4ENSG00000103671.5595.76340437.278600.446103.595702.98980HepG2PTBP1
TRIP4ENSG00000103671.5732.61140564.795400.375202.957702.26370HepG2PUM2
TRIP4ENSG00000103671.5505.20480356.494600.502904.633703.87560HepG2PUS1
TRIP4ENSG00000103671.5594.40210473.622000.327601.964201.42390HepG2QKI
TRIP4ENSG00000103671.5781.64710342.093401.192008.980607.75710HepG2RAVER1
TRIP4ENSG00000103671.5715.51200418.756900.772809.623208.15810HepG2RBM15
TRIP4ENSG00000103671.51029.12360593.583700.7938013.3970012.42760HepG2RBM22
TRIP4ENSG00000103671.5589.33940429.827900.455203.161202.44520HepG2RBM25
TRIP4ENSG00000103671.5661.69760497.723600.410702.983902.27760HepG2RPLP0
TRIP4ENSG00000103671.5392.98120241.136500.704505.075804.27220HepG2RPS19
TRIP4ENSG00000103671.5517.28680400.359600.369602.056001.35980HepG2RPS2
TRIP4ENSG00000103671.5486.44270366.838500.407003.372802.67390HepG2SMN1
TRIP4ENSG00000103671.5669.12460442.115300.597802.862702.06740HepG2SNRNP70
TRIP4ENSG00000103671.51154.26360670.431100.7837016.6423015.68560HepG2SRFBP1
TRIP4ENSG00000103671.5615.83490475.217100.373902.741102.26960HepG2SRSF1
TRIP4ENSG00000103671.5532.14090386.603000.460904.024403.38230HepG2SRSF9
TRIP4ENSG00000103671.5507.38520362.521700.484902.525701.48190HepG2STIP1
TRIP4ENSG00000103671.5406.25890285.839100.507103.303102.28090HepG2SUPT6H
TRIP4ENSG00000103671.5673.20010361.007700.898908.628607.54200HepG2SUPV3L1
TRIP4ENSG00000103671.5601.40520362.088600.731906.012305.10260HepG2U2AF1
TRIP4ENSG00000103671.5496.07600336.399800.560302.556801.35060HepG2XRCC5
TRIP4ENSG00000103671.5216.66110381.73840-0.817108.234707.17930HepG2ZC3H8
TRIP4ENSG00000103671.5648.71530382.296800.7628011.8961010.95900HepG2ZNF622
TRIP4ENSG00000103671.51000.55280707.200900.500504.239103.54220K562AQR
TRIP4ENSG00000103671.5664.52090426.838600.638504.042802.98540K562BOP1
TRIP4ENSG00000103671.5835.78640589.181700.504306.215705.29370K562DDX47
TRIP4ENSG00000103671.5339.56410205.769700.722602.843601.82380K562EIF3A
TRIP4ENSG00000103671.5487.27240332.458800.551504.604703.85120K562FXR1
TRIP4ENSG00000103671.5462.45810341.757300.436302.590402.01020K562HNRNPC
TRIP4ENSG00000103671.5582.75110427.216600.447802.635901.43430K562HNRNPK
TRIP4ENSG00000103671.5574.73120394.824900.541603.390602.35250K562HNRNPM
TRIP4ENSG00000103671.5528.64650321.892700.715605.439404.38460K562PRPF8
TRIP4ENSG00000103671.5575.31650436.702400.397602.432901.80370K562PTBP1
TRIP4ENSG00000103671.51250.13260867.136700.527604.287603.27910K562PUF60
TRIP4ENSG00000103671.5485.12720327.889400.565103.274002.38310K562RPS19
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TRIP4 is not available on ENCORE database.





7 RBPs can affect the splicing of TRIP4 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETRIP4ENSG00000103671.5chr15+646985286469865864692941646930206470181164701883-0.125000.001410.04120excludedK562AKAP8L
SETRIP4ENSG00000103671.5chr15+646985286469865864692941646930206470181164701883-0.094000.001940.02138excludedK562AQR
SETRIP4ENSG00000103671.5chr15+647062836470641064701811647020276471073964710927-0.099000.006040.05434excludedK562AQR
SETRIP4ENSG00000103671.5chr15+646985286469865864692941646930206470181164701883-0.108000.003190.04393excludedK562PUS1
SETRIP4ENSG00000103671.5chr15+6473720464737307647177386471783064747195647475020.116000.000730.06040includedHepG2DDX6
SETRIP4ENSG00000103671.5chr15+646985286469865864692941646930206470181164701883-0.127000.002160.06051excludedK562UTP18
SETRIP4ENSG00000103671.5chr15+646985286469865864692941646930206470181164701883-0.152000.000260.00954excludedK562RBM15
SETRIP4ENSG00000103671.5chr15+646985286469865864692941646930206470181164701883-0.127000.001620.04026excludedK562AGGF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TRIP4 is not avaliable on ENCORE database.