SPATA5L1

General Information

Gene Name       : SPATA5L1
Gene ID             : ENSG00000171763.18
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: SPATA5L1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SPATA5L1ENSG00000171763.188.1511.719.93ENCSR000AEF
HepG2SPATA5L1ENSG00000171763.1810.6718.2614.46ENCSR985KAT
K562SPATA5L1ENSG00000171763.1812.6614.2313.45ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SPATA5L1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SPATA5L1 RNA is bound by 7 proteins.  







eCLIP assay for SPATA5L1 is not avaliable on ENCORE database.





7 proteins are bound to SPATA5L1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr154570262445702725+3'-UTR,CDS3.318034.56136K562GRWD1
chr154570265945702725+3'-UTR,CDS3.495384.34695HepG2BCLAF1
chr154570948745709562+3'-UTR,CDS4.877105.23259HepG2BCLAF1
chr154569523245695280+CDS4.080765.07081HepG2XPO5
chr154569749745697566+CDS,intron-Proximal4.019294.97118HepG2U2AF2
chr154570675145706801+CDS,intron-Distal,intron-Proximal3.872203.18234K562BUD13
chr154569760545697691+CDS3.267183.59112HepG2PPIG
chr154569899545699070+intron-Distal4.968446.83215HepG2U2AF2
chr154569571645695767+intron-Proximal5.421107.28294K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SPATA5L1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SPATA5L1 is not available on ENCORE database.

  • 44 RBPs can affect the levels of SPATA5L1.  








The Knockdown/knockout RNA-Seq assay for SPATA5L1 is not available on ENCORE database.





44 RBPs can affect the gene expression of SPATA5L1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SPATA5L1ENSG00000171763.13127.68810205.83310-0.688902.853102.23750HepG2ACO1
SPATA5L1ENSG00000171763.1399.34550178.41680-0.844703.505602.34130HepG2AKAP8
SPATA5L1ENSG00000171763.13244.14060335.99480-0.460702.486501.82940HepG2AUH
SPATA5L1ENSG00000171763.13116.85820255.32060-1.127606.518505.60140HepG2DDX6
SPATA5L1ENSG00000171763.13312.11340196.907500.664504.520403.69130HepG2DKC1
SPATA5L1ENSG00000171763.1380.12470158.73510-0.986305.044604.12050HepG2DNAJC21
SPATA5L1ENSG00000171763.13140.70240245.37980-0.802403.946603.24650HepG2EIF2S1
SPATA5L1ENSG00000171763.13143.01000264.05540-0.884704.048703.22390HepG2EIF4B
SPATA5L1ENSG00000171763.13420.27330271.415000.630702.566701.75480HepG2EIF4G1
SPATA5L1ENSG00000171763.13299.67470201.070500.575602.451401.66420HepG2EWSR1
SPATA5L1ENSG00000171763.13143.64290253.81550-0.821304.380303.55100HepG2G3BP1
SPATA5L1ENSG00000171763.13118.16550177.07740-0.583602.598102.01160HepG2HNRNPU
SPATA5L1ENSG00000171763.13639.69180273.763201.2243014.0729012.64370HepG2MAGOH
SPATA5L1ENSG00000171763.13180.35290250.85900-0.476101.920601.30980HepG2PABPC4
SPATA5L1ENSG00000171763.13321.26610209.643600.615704.565203.81130HepG2PUS1
SPATA5L1ENSG00000171763.13187.65790290.33850-0.629603.473602.78410HepG2QKI
SPATA5L1ENSG00000171763.13137.08840198.37970-0.533202.317201.68340HepG2RPLP0
SPATA5L1ENSG00000171763.13452.01590259.856600.798605.373604.41590HepG2SF3A3
SPATA5L1ENSG00000171763.13116.90120184.18600-0.655901.988501.33130HepG2SNRNP70
SPATA5L1ENSG00000171763.13209.37020364.16480-0.798506.834906.14500HepG2SRFBP1
SPATA5L1ENSG00000171763.13385.88720291.350900.405302.437501.98610HepG2SRSF1
SPATA5L1ENSG00000171763.13180.15250257.11950-0.513202.694102.07420HepG2SRSF5
SPATA5L1ENSG00000171763.13157.43570237.04430-0.590403.195602.61160HepG2SRSF9
SPATA5L1ENSG00000171763.13455.61450316.196100.526904.597803.97050HepG2SSB
SPATA5L1ENSG00000171763.13177.54250261.92530-0.561002.864102.29420HepG2TAF15
SPATA5L1ENSG00000171763.13115.04610173.60210-0.593602.151901.64190HepG2TRIM56
SPATA5L1ENSG00000171763.13261.53640168.928300.630502.566001.95860HepG2U2AF1
SPATA5L1ENSG00000171763.13162.57650230.45370-0.503402.502301.83240HepG2UPF1
SPATA5L1ENSG00000171763.13249.41670167.958600.570402.610901.90660HepG2XRN2
SPATA5L1ENSG00000171763.13175.51800253.45410-0.530103.083202.51490HepG2ZNF622
SPATA5L1ENSG00000171763.13278.42550194.355200.518502.446501.34250K562AARS
SPATA5L1ENSG00000171763.13351.46270237.853200.563203.828203.17950K562AGGF1
SPATA5L1ENSG00000171763.13361.55240247.497000.546703.256502.54610K562AKAP8L
SPATA5L1ENSG00000171763.13951.92080449.731601.0817014.3384013.14910K562AQR
SPATA5L1ENSG00000171763.13383.45390259.684000.562204.151603.01210K562ATP5C1
SPATA5L1ENSG00000171763.13395.07520266.324400.568804.428303.28330K562DKC1
SPATA5L1ENSG00000171763.13327.64920224.768000.543603.140802.26900K562EIF4A3
SPATA5L1ENSG00000171763.13317.52560233.749700.441802.414601.84200K562FXR1
SPATA5L1ENSG00000171763.13220.05830303.43680-0.463502.392901.39710K562HNRNPA1
SPATA5L1ENSG00000171763.13443.77300288.493100.621204.874903.75180K562MAGOH
SPATA5L1ENSG00000171763.13410.89420294.241200.481702.850901.92410K562MBNL1
SPATA5L1ENSG00000171763.13362.09350200.001200.856305.771604.68610K562PRPF8
SPATA5L1ENSG00000171763.13469.55700245.449000.935807.928107.05620K562PUS1
SPATA5L1ENSG00000171763.13393.99460239.153200.720105.910105.07040K562RBM15
SPATA5L1ENSG00000171763.13337.67570237.746800.506103.148702.23610K562SF3B4
SPATA5L1ENSG00000171763.13400.77050248.859800.687302.709301.43490K562UTP18
SPATA5L1ENSG00000171763.13350.42150275.738000.345702.085101.34310K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SPATA5L1 is not available on ENCORE database.





10 RBPs can affect the splicing of SPATA5L1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESPATA5L1ENSG00000171763.13chr15+456992264569942145697656456977034570256945702689-0.072000.001350.04687excludedK562PRPF8
SESPATA5L1ENSG00000171763.13chr15+456992594569942145697517456977034570256945702689-0.105000.000100.07880excludedK562TROVE2
SESPATA5L1ENSG00000171763.13chr15+456992594569942145697517456977034570256945702689-0.173000.001440.03616excludedHepG2HNRNPK
SESPATA5L1ENSG00000171763.13chr15+456992594569942145697517456977034570256945702689-0.232000.000000.00025excludedHepG2AKAP1
SESPATA5L1ENSG00000171763.13chr15+456992594569942145697517456977034570256945702689-0.200000.000100.01312excludedHepG2DDX3X
SESPATA5L1ENSG00000171763.13chr15+456992594569942145697517456977034570256945702689-0.208000.000250.01443excludedHepG2MATR3
SESPATA5L1ENSG00000171763.13chr15+4569925945699421456975174569770345702569457026890.236000.000210.02865includedHepG2TAF15
SESPATA5L1ENSG00000171763.13chr15+456992264569942145697656456977034570256945702689-0.092000.000980.03791excludedHepG2HNRNPC
A3SSSPATA5L1ENSG00000171763.13chr15+4571072345710880457107544571088045709466457095970.088000.000090.00081longerK562AQR
A3SSSPATA5L1ENSG00000171763.13chr15+4570775645707977457077844570797745706768457069780.073000.001230.00836longerK562AQR
A5SSSPATA5L1ENSG00000171763.13chr15+4570778445708007457077844570797745709466457095970.235000.000000.00000longerK562AQR
A5SSSPATA5L1ENSG00000171763.13chr15+4570778445708007457077844570797745709466457095970.219000.000030.00899longerK562HNRNPU

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SPATA5L1 is not avaliable on ENCORE database.