RPP30

General Information

Gene Name       : RPP30
Gene ID             : ENSG00000148688.13
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: RPP30)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RPP30ENSG00000148688.1354.0250.2852.15ENCSR000AEF
HepG2RPP30ENSG00000148688.1325.2156.6040.91ENCSR985KAT
K562RPP30ENSG00000148688.1343.2251.2547.23ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RPP30 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RPP30 RNA is bound by 3 proteins.  







eCLIP assay for RPP30 is not avaliable on ENCORE database.





3 proteins are bound to RPP30 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr109265562992655685+CDS,intron-Distal,intron-Proximal3.616373.16095HepG2U2AF2
chr109265563692655659+CDS,intron-Distal,intron-Proximal4.562247.87748K562PUM2
chr109265521892655241+CDS,intron-Distal,intron-Proximal4.108798.73210K562PUM2
chr109263586892635956+intron-Distal,intron-Proximal3.267564.10408K562KHSRP
chr109263592292636053+intron-Distal,intron-Proximal3.685133.95921HepG2U2AF2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RPP30 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RPP30 is not available on ENCORE database.

  • 59 RBPs can affect the levels of RPP30.  








The Knockdown/knockout RNA-Seq assay for RPP30 is not available on ENCORE database.





59 RBPs can affect the gene expression of RPP30 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RPP30ENSG00000148688.9310.13760427.77680-0.463902.374501.64320HepG2ASCC1
RPP30ENSG00000148688.9465.02160588.79500-0.340502.463901.80900HepG2AUH
RPP30ENSG00000148688.9263.48330391.70770-0.572102.694101.80580HepG2BCLAF1
RPP30ENSG00000148688.9404.12450559.29740-0.468803.025102.40250HepG2BOP1
RPP30ENSG00000148688.9296.79600513.47010-0.790806.464405.44700HepG2CPSF6
RPP30ENSG00000148688.9376.42440576.31030-0.614506.370205.47120HepG2CELF1
RPP30ENSG00000148688.9513.52390619.70540-0.271202.075201.42010HepG2DAZAP1
RPP30ENSG00000148688.9280.96430425.46840-0.598703.257902.59340HepG2DDX6
RPP30ENSG00000148688.9257.10010398.52960-0.632405.081204.15430HepG2DNAJC21
RPP30ENSG00000148688.9272.75970395.02460-0.534304.564003.76240HepG2DNAJC2
RPP30ENSG00000148688.9191.92440408.96730-1.091409.085908.04970HepG2EIF2S1
RPP30ENSG00000148688.9344.14920585.64010-0.767006.920905.65840HepG2EIF4G2
RPP30ENSG00000148688.9279.49470423.01830-0.597903.479002.73670HepG2G3BP1
RPP30ENSG00000148688.9409.82730582.07120-0.506202.917802.26170HepG2GPKOW
RPP30ENSG00000148688.9374.97490512.68920-0.451303.627502.81530HepG2HNRNPF
RPP30ENSG00000148688.9426.34360564.51340-0.405003.608302.84470HepG2HNRNPL
RPP30ENSG00000148688.9369.27240555.48010-0.589003.949603.21090HepG2HNRNPLL
RPP30ENSG00000148688.9347.28260444.58300-0.356302.334501.77380HepG2HNRNPU
RPP30ENSG00000148688.9352.07400504.85420-0.520003.884803.03810HepG2IGF2BP1
RPP30ENSG00000148688.9291.33910429.97630-0.561603.234302.51040HepG2IGF2BP2
RPP30ENSG00000148688.9237.62550418.12380-0.815205.899904.85820HepG2PABPC4
RPP30ENSG00000148688.9692.55760462.775000.581503.116001.83350HepG2PRPF6
RPP30ENSG00000148688.9307.77050389.03180-0.338001.813001.35200HepG2PTBP1
RPP30ENSG00000148688.9414.11660586.58270-0.502303.790703.10500HepG2PUF60
RPP30ENSG00000148688.9498.44430622.67360-0.321002.873802.27210HepG2PUM1
RPP30ENSG00000148688.9471.36470622.22490-0.400602.942302.25060HepG2PUM2
RPP30ENSG00000148688.9325.83400421.33640-0.370802.054401.50450HepG2QKI
RPP30ENSG00000148688.9314.63230436.49340-0.472302.298701.56560HepG2RPS2
RPP30ENSG00000148688.9242.89160395.91810-0.704906.594005.66300HepG2SAFB2
RPP30ENSG00000148688.9629.36170457.463800.460102.355401.73460HepG2SF3A3
RPP30ENSG00000148688.9387.13630549.82300-0.506103.346002.57720HepG2SF3B1
RPP30ENSG00000148688.9412.87510562.42110-0.445904.147503.31270HepG2SLBP
RPP30ENSG00000148688.9372.84080611.77180-0.714403.946003.00500HepG2SNRNP70
RPP30ENSG00000148688.9505.16810638.16580-0.337202.578502.08830HepG2SRFBP1
RPP30ENSG00000148688.9645.87210422.768900.611306.565805.91200HepG2SRSF1
RPP30ENSG00000148688.9451.79860579.15310-0.358302.781302.15380HepG2SRSF5
RPP30ENSG00000148688.9352.28630503.69440-0.515804.540903.68240HepG2SRSF7
RPP30ENSG00000148688.9250.44040343.94350-0.457703.015302.44420HepG2SRSF9
RPP30ENSG00000148688.9425.34820554.09390-0.381502.937502.41310HepG2SSB
RPP30ENSG00000148688.9224.25320441.19840-0.976306.586305.61130HepG2SUPV3L1
RPP30ENSG00000148688.9263.22530541.38720-1.0404010.759809.46990HepG2TARDBP
RPP30ENSG00000148688.9255.62600431.97790-0.756906.787006.06680HepG2TIAL1
RPP30ENSG00000148688.9239.57240435.85830-0.8634010.172909.19640HepG2TRIM56
RPP30ENSG00000148688.9449.70330573.05030-0.349702.130501.37170HepG2TUFM
RPP30ENSG00000148688.9601.91950419.259800.521603.452602.75600HepG2U2AF1
RPP30ENSG00000148688.9454.36450606.55410-0.416802.091101.36940HepG2UBE2L3
RPP30ENSG00000148688.9269.49270405.69990-0.590204.931204.04110HepG2UPF1
RPP30ENSG00000148688.9552.16690391.688200.495304.141103.43130HepG2UTP3
RPP30ENSG00000148688.9358.31880446.19310-0.316402.119201.62200HepG2ZNF622
RPP30ENSG00000148688.91162.08220946.287100.296301.808901.31430K562AQR
RPP30ENSG00000148688.9571.47040749.61000-0.391502.442101.62730K562BOP1
RPP30ENSG00000148688.9588.66000797.08230-0.437303.650402.75040K562CPSF6
RPP30ENSG00000148688.9582.85920803.37440-0.462903.671402.86370K562EIF2S2
RPP30ENSG00000148688.9619.79010422.316400.553405.510804.69720K562FXR1
RPP30ENSG00000148688.9623.69790461.688100.433802.200101.58030K562G3BP2
RPP30ENSG00000148688.9478.00980649.76910-0.442902.222401.39670K562KRR1
RPP30ENSG00000148688.9578.92320725.85860-0.326303.150302.35790K562NSUN2
RPP30ENSG00000148688.9661.45680430.927900.618104.798103.81510K562PRPF8
RPP30ENSG00000148688.91614.733501214.259700.411102.348601.59700K562PUF60
RPP30ENSG00000148688.9880.45520611.327000.526202.178701.68520K562PUS1
RPP30ENSG00000148688.9671.50970537.532800.321002.034001.41750K562SRSF1
RPP30ENSG00000148688.9793.29340630.830700.330502.469501.69550K562SYNCRIP
RPP30ENSG00000148688.9612.97230447.832000.452802.663601.59510K562U2AF1
RPP30ENSG00000148688.9626.12960462.412800.437203.528902.62230K562U2AF2
RPP30ENSG00000148688.9556.04080769.64040-0.469005.299604.33990K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RPP30 is not available on ENCORE database.





14 RBPs can affect the splicing of RPP30 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERPP30ENSG00000148688.9chr10+926552109265524092654531926546489265563692655674-0.239000.006000.08726excludedHepG2U2AF1
SERPP30ENSG00000148688.9chr10+9263600092636117926357809263585592638819926388910.090000.000070.00299includedHepG2HNRNPK
SERPP30ENSG00000148688.9chr10+926552109265524092654531926546489265563692655674-0.570000.000000.00001excludedHepG2U2AF2
SERPP30ENSG00000148688.9chr10+926552109265524092654531926546489265563692655674-0.322000.000000.00000excludedK562AQR
SERPP30ENSG00000148688.9chr10+9263600092636117926357809263585592638819926388910.105000.000080.02117includedHepG2TIA1
SERPP30ENSG00000148688.9chr10+9263600092636117926357809263585592638819926388910.150000.000000.00000includedHepG2HNRNPL
SERPP30ENSG00000148688.9chr10+926552109265524092654531926546489265563692655674-0.265000.000840.02677excludedHepG2SF3A3
SERPP30ENSG00000148688.9chr10+926552109265524092654531926546489265563692655674-0.122000.003020.07680excludedK562UTP18
SERPP30ENSG00000148688.9chr10+9263600092636117926357809263585592638819926388910.093000.000150.02190includedHepG2TAF15
SERPP30ENSG00000148688.9chr10+926552109265524092654531926546489265563692655674-0.542000.000000.00000excludedK562U2AF2
SERPP30ENSG00000148688.9chr10+926552109265524092654531926546489265563692655674-0.253000.000040.00282excludedK562TARDBP
A3SSRPP30ENSG00000148688.9chr10+9266030392660425926603269266042592656069926561490.094000.000000.00005longerK562AQR
A5SSRPP30ENSG00000148688.9chr10+926545319265524092654531926546489265563692655674-0.346000.000020.00869shorterK562TARDBP
A5SSRPP30ENSG00000148688.9chr10+926545319265524092654531926546489265563692655674-0.438000.000000.00000shorterK562AQR
A5SSRPP30ENSG00000148688.9chr10+926545319265524092654531926546489265563692655674-0.548000.000000.00012shorterHepG2U2AF2
A5SSRPP30ENSG00000148688.9chr10+926545319265524092654531926546489265563692655674-0.345000.000350.03116shorterHepG2SF3A3
A5SSRPP30ENSG00000148688.9chr10+926545319265524092654531926546489265563692655674-0.448000.000000.00022shorterK562U2AF2
RIRPP30ENSG00000148688.9chr10+9265453192655240926545319265464892655210926552400.230000.000000.00000includedK562PUS1
RIRPP30ENSG00000148688.9chr10+9265453192655240926545319265464892655210926552400.113000.001070.01450includedK562AGGF1
RIRPP30ENSG00000148688.9chr10+9265453192655240926545319265464892655210926552400.137000.000630.00743includedK562AKAP8L
RIRPP30ENSG00000148688.9chr10+9265453192655240926545319265464892655210926552400.146000.000130.00213includedK562RBM15
RIRPP30ENSG00000148688.9chr10+9265453192655240926545319265464892655210926552400.316000.000010.00030includedK562U2AF2
RIRPP30ENSG00000148688.9chr10+9265453192655240926545319265464892655210926552400.141000.000130.00260includedK562UTP18
MXERPP30ENSG00000148688.9chr10+92635291926353719263578092635855926346259263468192638819926388910.069000.000680.006491includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RPP30 is not avaliable on ENCORE database.