RP11-302B13.5

General Information

Gene Name : RP11-302B13.5
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RP11-302B13.5)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RP11-302B13.5 is not avaliable on ENCORE database.

Proteins bound to RNA

RP11-302B13.5 RNA is bound by 37 proteins.

eCLIP assay for RP11-302B13.5 is not avaliable on ENCORE database.

37 proteins are bound to RP11-302B13.5 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr12	49351109	49351175	-	5'-UTR,intron-Distal,intron-Proximal	3.09233	14.03068	HepG2	DDX3X
chr12	49351104	49351235	-	5'-UTR,intron-Distal,intron-Proximal	3.15624	5.82626	HepG2	GTF2F1
chr12	49334896	49334960	-	3'-UTR,5'-UTR,intron-Distal,intron-Proximal	3.38260	4.94406	K562	YBX3
chr12	49351094	49351181	-	5'-UTR,intron-Distal,intron-Proximal	6.00514	8.59898	K562	FTO
chr12	49351094	49351179	-	5'-UTR,intron-Distal,intron-Proximal	3.83556	15.13050	K562	DDX3X
chr12	49351100	49351217	-	5'-UTR,intron-Distal,intron-Proximal	3.77832	3.12941	K562	UCHL5
chr12	49351113	49351229	-	5'-UTR,intron-Distal,intron-Proximal	3.10618	3.29171	HepG2	EIF3D
chr12	49351109	49351150	-	5'-UTR,intron-Distal,intron-Proximal	3.11451	3.41568	HepG2	NCBP2
chr12	49351087	49351229	-	5'-UTR,intron-Distal,intron-Proximal	4.86049	4.02157	HepG2	FTO
chr12	49351122	49351263	-	5'-UTR,intron-Distal,intron-Proximal	3.38677	6.94962	HepG2	PRPF4
chr12	49333433	49333489	-	CDS,intron-Distal,intron-Proximal	3.40026	4.51003	HepG2	PPIG
chr12	49333778	49333865	-	CDS,intron-Distal,intron-Proximal	3.87282	4.93978	HepG2	BCLAF1
chr12	49318896	49318973	-	CDS,intron-Distal,intron-Proximal	5.52485	6.68817	HepG2	EFTUD2
chr12	49331078	49331181	-	3'-UTR,intron-Distal	4.65314	4.92727	HepG2	AKAP1
chr12	49332608	49332689	-	3'-UTR,intron-Distal,intron-Proximal	3.39074	10.95987	HepG2	HNRNPK
chr12	49330389	49330465	-	3'-UTR,intron-Distal	3.04150	4.12287	K562	MATR3
chr12	49318865	49318990	-	CDS,intron-Distal,intron-Proximal	4.56991	5.54639	K562	CSTF2T
chr12	49331327	49331428	-	3'-UTR,intron-Distal	3.43427	19.64936	K562	UPF1
chr12	49332619	49332690	-	3'-UTR,intron-Distal,intron-Proximal	5.29046	54.79542	HepG2	PCBP2
chr12	49326758	49326849	-	intron-Distal	4.52077	11.00366	K562	TARDBP
chr12	49330757	49330787	-	3'-UTR,intron-Distal	3.98946	3.24322	HepG2	MATR3
chr12	49332742	49332862	-	CDS,intron-Distal	3.98217	5.94293	HepG2	BCLAF1
chr12	49318895	49319030	-	CDS,intron-Distal,intron-Proximal	5.24415	10.32454	HepG2	PRPF4
chr12	49330138	49330204	-	3'-UTR,intron-Distal	4.24060	7.66179	K562	MATR3
chr12	49318849	49318936	-	CDS,intron-Distal,intron-Proximal	3.81141	3.42611	HepG2	SRSF1
chr12	49317918	49317964	-	intron-Distal,intron-Proximal	4.45318	3.85435	K562	PRPF8
chr12	49330204	49330284	-	3'-UTR,intron-Distal	4.33351	9.25530	K562	MATR3
chr12	49332140	49332220	-	3'-UTR,intron-Distal,intron-Proximal	5.22307	18.14696	HepG2	UPF1
chr12	49330083	49330126	-	3'-UTR,intron-Distal	4.29219	20.46341	K562	PUM2
chr12	49331730	49331809	-	3'-UTR,intron-Distal	4.85503	17.87293	K562	UPF1
chr12	49330078	49330133	-	3'-UTR,intron-Distal	4.51466	11.61021	K562	TARDBP
chr12	49332142	49332214	-	3'-UTR,intron-Distal,intron-Proximal	3.70898	11.84041	K562	CSTF2T
chr12	49330200	49330221	-	3'-UTR,intron-Distal	5.21816	19.10801	K562	PTBP1
chr12	49330584	49330670	-	3'-UTR,intron-Distal	3.56621	9.68763	HepG2	PTBP1
chr12	49332133	49332213	-	3'-UTR,intron-Distal,intron-Proximal	3.89966	23.42525	K562	FAM120A
chr12	49330781	49330845	-	3'-UTR,intron-Distal	5.21321	28.64898	K562	TARDBP
chr12	49330583	49330630	-	3'-UTR,intron-Distal	5.28146	22.15177	K562	PTBP1
chr12	49331043	49331103	-	3'-UTR,intron-Distal	4.15294	7.11247	HepG2	UPF1
chr12	49351150	49351237	-	5'-UTR,intron-Distal,intron-Proximal	3.56742	10.03049	HepG2	NCBP2
chr12	49330059	49330140	-	3'-UTR,intron-Distal	3.75846	4.20072	K562	IGF2BP1
chr12	49330297	49330343	-	3'-UTR,intron-Distal	4.04618	3.02250	K562	YBX3
chr12	49318449	49318496	-	intron-Distal,intron-Proximal	3.76863	6.96502	HepG2	SF3B4
chr12	49318341	49318404	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.08468	5.52342	HepG2	PPIG
chr12	49330345	49330402	-	3'-UTR,intron-Distal	4.92683	17.80970	K562	LIN28B
chr12	49332505	49332552	-	3'-UTR,intron-Distal	5.66595	20.14217	HepG2	PCBP2
chr12	49330497	49330583	-	3'-UTR,intron-Distal	3.99984	27.56062	K562	PTBP1
chr12	49318304	49318358	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	5.05425	11.43008	HepG2	PRPF8
chr12	49330746	49330826	-	3'-UTR,intron-Distal	5.55532	40.66580	K562	UPF1
chr12	49317950	49318043	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.09193	9.56105	HepG2	PPIG
chr12	49332153	49332209	-	3'-UTR,intron-Distal,intron-Proximal	4.24266	10.88343	K562	GTF2F1
chr12	49332133	49332207	-	3'-UTR,intron-Distal,intron-Proximal	5.35483	27.45381	K562	UPF1
chr12	49332229	49332336	-	3'-UTR,intron-Distal,intron-Proximal	4.66375	54.66508	K562	PUM2
chr12	49307937	49307988	-	intron-Distal	3.64879	3.69388	HepG2	XPO5
chr12	49330616	49330673	-	3'-UTR,intron-Distal	3.28606	9.82649	HepG2	PCBP2
chr12	49330688	49330724	-	3'-UTR,intron-Distal	4.09810	17.69871	K562	UPF1
chr12	49331803	49331868	-	3'-UTR,intron-Distal	3.46756	6.40723	K562	YBX3
chr12	49330730	49330781	-	3'-UTR,intron-Distal	4.81146	15.04421	K562	TARDBP
chr12	49330630	49330677	-	3'-UTR,intron-Distal	3.99013	19.71958	K562	PTBP1
chr12	49331157	49331216	-	3'-UTR,intron-Distal	3.93431	19.08639	K562	UPF1
chr12	49330221	49330251	-	3'-UTR,intron-Distal	4.53697	22.21096	K562	PTBP1
chr12	49332530	49332608	-	3'-UTR,intron-Distal	3.45961	7.20917	HepG2	HNRNPK
chr12	49317967	49318036	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.17680	13.58900	HepG2	PRPF8
chr12	49332572	49332605	-	3'-UTR,intron-Distal	4.53872	13.61158	HepG2	PCBP2
chr12	49330751	49330780	-	3'-UTR,intron-Distal	4.09935	3.80512	K562	CSTF2T
chr12	49330752	49330810	-	3'-UTR,intron-Distal	5.66899	22.54839	K562	EIF4G2
chr12	49316420	49316463	-	intron-Distal	4.73892	3.01043	HepG2	PCBP2
chr12	49331078	49331134	-	3'-UTR,intron-Distal	3.67689	10.44733	K562	UPF1
chr12	49317524	49317576	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.59530	3.98203	HepG2	PRPF8
chr12	49330251	49330287	-	3'-UTR,intron-Distal	3.79718	12.19461	K562	PTBP1
chr12	49331774	49331838	-	3'-UTR,intron-Distal	4.99724	5.94150	HepG2	UPF1
chr12	49330725	49330746	-	3'-UTR,intron-Distal	3.98844	22.24551	K562	UPF1
chr12	49331557	49331604	-	3'-UTR,intron-Distal	3.64689	10.04054	K562	UPF1
chr12	49331103	49331173	-	3'-UTR,intron-Distal	5.66430	11.00768	HepG2	UPF1
chr12	49330465	49330566	-	3'-UTR,intron-Distal	5.30775	9.60586	K562	MATR3
chr12	49331182	49331256	-	3'-UTR,intron-Distal	3.13694	3.95211	HepG2	STAU2
chr12	49316524	49316568	-	3'-UTR,intron-Distal,intron-Proximal	3.06367	4.03740	HepG2	PCBP2
chr12	49331173	49331251	-	3'-UTR,intron-Distal	4.16082	6.36332	HepG2	UPF1
chr12	49317619	49317707	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.10439	5.63851	K562	SF3B4
chr12	49330696	49330782	-	3'-UTR,intron-Distal	3.45727	4.57207	HepG2	KHSRP
chr12	49330490	49330573	-	3'-UTR,intron-Distal	4.41825	15.03344	K562	TIA1
chr12	49332231	49332360	-	3'-UTR,intron-Distal,intron-Proximal	3.83984	8.16117	K562	TARDBP
chr12	49330402	49330437	-	3'-UTR,intron-Distal	4.84205	7.42079	K562	LIN28B
chr12	49332507	49332590	-	3'-UTR,intron-Distal	5.07102	15.04881	K562	HNRNPK
chr12	49332150	49332214	-	3'-UTR,intron-Distal,intron-Proximal	4.30736	3.76295	K562	IGF2BP2
chr12	49330358	49330438	-	3'-UTR,intron-Distal	4.07989	6.03468	HepG2	LIN28B
chr12	49331216	49331272	-	3'-UTR,intron-Distal	3.61842	13.92183	K562	UPF1
chr12	49351179	49351262	-	5'-UTR,intron-Distal,intron-Proximal	3.02142	6.25233	K562	DDX3X
chr12	49332602	49332666	-	3'-UTR,intron-Distal,intron-Proximal	3.55775	4.63830	HepG2	LARP4
chr12	49330495	49330584	-	3'-UTR,intron-Distal	4.08088	12.26740	HepG2	PTBP1
chr12	49332615	49332689	-	3'-UTR,intron-Distal,intron-Proximal	4.47081	5.88337	HepG2	PCBP1
chr12	49317929	49318008	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.64582	7.15298	K562	AQR
chr12	49317634	49317721	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.54048	5.32775	HepG2	SF3B4
chr12	49330143	49330184	-	3'-UTR,intron-Distal	3.72996	5.84135	HepG2	PCBP2
chr12	49333369	49333437	-	intron-Distal,intron-Proximal	4.33466	4.53454	K562	PRPF8
chr12	49326625	49326713	-	intron-Distal	3.35011	3.95118	HepG2	PCBP2
chr12	49330744	49330829	-	3'-UTR,intron-Distal	4.19317	4.20072	K562	IGF2BP1
chr12	49333162	49333226	-	intron-Distal	4.89308	5.39854	K562	PTBP1
chr12	49330913	49330975	-	3'-UTR,intron-Distal	4.46961	18.08989	K562	UPF1
chr12	49332552	49332572	-	3'-UTR,intron-Distal	5.99940	31.82275	HepG2	PCBP2
chr12	49330056	49330141	-	3'-UTR,intron-Distal	3.94055	29.07135	K562	UPF1
chr12	49330853	49330913	-	3'-UTR,intron-Distal	4.12712	15.64327	K562	UPF1
chr12	49330596	49330668	-	3'-UTR,intron-Distal	3.82928	6.21862	K562	MATR3
chr12	49331990	49332044	-	3'-UTR,intron-Distal	4.55861	13.96735	K562	UPF1
chr12	49317598	49317670	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.41724	4.62947	HepG2	AQR
chr12	49332755	49332893	-	CDS,intron-Distal,intron-Proximal	3.33335	5.97777	HepG2	PPIG
chr12	49332613	49332690	-	3'-UTR,intron-Distal,intron-Proximal	5.21248	9.47642	K562	PCBP1
chr12	49330031	49330083	-	3'-UTR,intron-Distal	5.52882	74.39972	K562	PUM2
chr12	49351175	49351248	-	5'-UTR,intron-Distal,intron-Proximal	4.64730	13.85526	HepG2	DDX3X
chr12	49332590	49332686	-	3'-UTR,intron-Distal,intron-Proximal	3.38722	6.85260	K562	HNRNPK
chr12	49332158	49332222	-	3'-UTR,intron-Distal,intron-Proximal	3.95901	9.49962	K562	PUM2
chr12	49316463	49316524	-	intron-Distal,intron-Proximal	3.32044	5.20672	HepG2	PCBP2
chr12	49331174	49331261	-	3'-UTR,intron-Distal	3.39089	11.04124	K562	FAM120A
chr12	49330134	49330190	-	3'-UTR,intron-Distal	3.43178	4.91488	K562	PCBP1
chr12	49330378	49330499	-	3'-UTR,intron-Distal	3.81487	10.20032	HepG2	MATR3
chr12	49318410	49318484	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.61801	9.22974	HepG2	SF3A3
chr12	49330133	49330210	-	3'-UTR,intron-Distal	3.72953	8.02679	HepG2	MATR3
chr12	49330611	49330671	-	3'-UTR,intron-Distal	4.83146	11.92420	K562	TIA1
chr12	49332333	49332374	-	3'-UTR,intron-Distal,intron-Proximal	4.02456	17.47155	HepG2	PCBP2
chr12	49331673	49331684	-	3'-UTR,intron-Distal	4.18070	5.99105	K562	UPF1
chr12	49332141	49332218	-	3'-UTR,intron-Distal,intron-Proximal	4.34377	9.83890	HepG2	FAM120A
chr12	49331091	49331182	-	3'-UTR,intron-Distal	4.48922	5.64756	HepG2	STAU2
chr12	49332151	49332214	-	3'-UTR,intron-Distal,intron-Proximal	3.60427	7.48701	K562	DDX6
chr12	49332140	49332226	-	3'-UTR,intron-Distal,intron-Proximal	4.33639	17.70650	K562	EIF4G2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for RP11-302B13.5 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RP11-302B13.5 is not available on ENCORE database.
16 RBPs can affect the levels of RP11-302B13.5.

The Knockdown/knockout RNA-Seq assay for RP11-302B13.5 is not available on ENCORE database.

16 RBPs can affect the gene expression of RP11-302B13.5 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RP11-302B13.5	ENSG00000272822.1	16.48190	0.00000	99999.99990	2.78620	1.80700	HepG2	CCAR1
RP11-302B13.5	ENSG00000272822.1	0.00000	8.71030	-99999.99999	2.32160	1.42910	HepG2	DDX59
RP11-302B13.5	ENSG00000272822.1	0.00000	8.29930	-99999.99999	2.11960	1.56110	HepG2	HNRNPLL
RP11-302B13.5	ENSG00000272822.1	12.76160	0.00000	99999.99990	3.41510	2.49130	HepG2	LARP4
RP11-302B13.5	ENSG00000272822.1	15.46670	1.37970	3.48670	2.50940	1.83670	HepG2	RAVER1
RP11-302B13.5	ENSG00000272822.1	15.32220	1.55410	3.30140	2.84050	2.15660	HepG2	SF3A3
RP11-302B13.5	ENSG00000272822.1	0.00000	8.21560	-99999.99999	2.13260	1.50770	HepG2	SF3B1
RP11-302B13.5	ENSG00000272822.1	13.11640	2.05980	2.67070	2.30500	1.31590	HepG2	STIP1
RP11-302B13.5	ENSG00000272822.1	11.79060	0.00000	99999.99990	3.06310	2.15820	K562	FMR1
RP11-302B13.5	ENSG00000272822.1	15.65130	0.00000	99999.99990	2.21370	1.50210	K562	GPKOW
RP11-302B13.5	ENSG00000272822.1	10.32070	0.00000	99999.99990	2.30880	1.61490	K562	GRSF1
RP11-302B13.5	ENSG00000272822.1	33.36510	1.60090	4.38130	2.73510	1.92400	K562	PUF60
RP11-302B13.5	ENSG00000272822.1	14.71650	0.00000	99999.99990	3.55160	1.72330	K562	RBM17
RP11-302B13.5	ENSG00000272822.1	11.62790	0.00000	99999.99990	2.99150	1.37790	K562	RBM39
RP11-302B13.5	ENSG00000272822.1	16.90470	3.97310	2.08900	1.93590	1.33200	K562	SRSF1
RP11-302B13.5	ENSG00000272822.1	15.02250	0.00000	99999.99990	3.79850	1.80860	K562	YTHDC2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RP11-302B13.5 is not available on ENCORE database.

7 RBPs can affect the splicing of RP11-302B13.5 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	RP11-302B13.5	ENSG00000272822.1	chr12	-	49349880	49349980	49334730	49334971	49351092	49351148	0.26000	0.00000	0.00000	included	HepG2	U2AF1
SE	RP11-302B13.5	ENSG00000272822.1	chr12	-	49349880	49349980	49334730	49334971	49351092	49351148	0.07800	0.00012	0.09618	included	K562	RBFOX2
SE	RP11-302B13.5	ENSG00000272822.1	chr12	-	49349880	49349980	49334730	49334971	49351092	49351148	0.15700	0.00380	0.04242	included	HepG2	U2AF2
SE	RP11-302B13.5	ENSG00000272822.1	chr12	-	49349880	49349980	49334730	49334971	49351092	49351148	0.14500	0.00000	0.00000	included	K562	AQR
SE	RP11-302B13.5	ENSG00000272822.1	chr12	-	49349880	49349980	49334730	49334971	49351092	49351148	0.07700	0.00069	0.08294	included	K562	HNRNPM
SE	RP11-302B13.5	ENSG00000272822.1	chr12	-	49349880	49349980	49334730	49334971	49351092	49351148	0.20600	0.00087	0.01770	included	K562	U2AF2
SE	RP11-302B13.5	ENSG00000272822.1	chr12	-	49349880	49349980	49334730	49334971	49351092	49351148	0.22600	0.00002	0.02768	included	K562	AARS
SE	RP11-302B13.5	ENSG00000272822.1	chr12	-	49349880	49349980	49334730	49334971	49351092	49351148	0.07500	0.00000	0.00003	included	K562	ZC3H8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RP11-302B13.5

General Information

Functions

Localization

Domains (AlphaFold: RP11-302B13.5)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RP11-302B13.5 is not avaliable on ENCORE database.

37 proteins are bound to RP11-302B13.5 RNA:

eCLIP assay for RP11-302B13.5 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RP11-302B13.5 is not available on ENCORE database.

16 RBPs can affect the gene expression of RP11-302B13.5 :

The Knockdown/knockout RNA-Seq assay for RP11-302B13.5 is not available on ENCORE database.

7 RBPs can affect the splicing of RP11-302B13.5 :

The Knockdown/knockout RNA-Seq assay for RP11-302B13.5 is not avaliable on ENCORE database.