RINT1

General Information

Gene Name       : RINT1
Gene ID             : ENSG00000135249.7
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: RINT1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RINT1ENSG00000135249.713.7412.5913.16ENCSR000AEF
HepG2RINT1ENSG00000135249.77.3913.7210.55ENCSR985KAT
K562RINT1ENSG00000135249.728.6230.6329.62ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RINT1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RINT1 RNA is bound by 20 proteins.  







eCLIP assay for RINT1 is not avaliable on ENCORE database.





20 proteins are bound to RINT1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr7105190453105190540+3'-UTR,CDS,intron-Proximal4.0194310.90247K562SF3B4
chr7105195550105195654+3'-UTR,CDS3.613905.15776HepG2BCLAF1
chr7105187354105187417+3'-UTR,5'-UTR,CDS,intron-Proximal3.1338010.88164K562DDX24
chr7105187356105187410+3'-UTR,5'-UTR,CDS,intron-Proximal4.081073.43526K562GRWD1
chr7105183006105183069+3'-UTR,5'-UTR,CDS3.1043718.72527K562ZNF622
chr7105187355105187423+3'-UTR,5'-UTR,CDS,intron-Proximal3.0594013.80134K562ZNF622
chr7105182928105182978+3'-UTR,5'-UTR,CDS,intron-Proximal3.863645.71420K562RBM15
chr7105190502105190528+3'-UTR,CDS3.265503.26275K562BUD13
chr7105190709105190772+3'-UTR,CDS3.732916.31765K562LIN28B
chr7105204188105204213+3'-UTR,CDS3.166683.50696K562BUD13
chr7105172761105172803+5'-UTR,CDS3.590467.86771K562ZNF622
chr7105177137105177190+5'-UTR,CDS,intron-Distal,intron-Proximal3.448824.05316K562GRWD1
chr7105172645105172788+5'-UTR,CDS3.211633.53349HepG2NCBP2
chr7105177080105177190+5'-UTR,CDS,intron-Distal,intron-Proximal3.5179217.78747K562ZNF622
chr7105177095105177205+5'-UTR,CDS,intron-Distal,intron-Proximal4.320694.78684K562SRSF7
chr7105172658105172788+5'-UTR,CDS3.7855513.09014K562DDX3X
chr7105177044105177137+5'-UTR,CDS,intron-Proximal3.077724.18246K562GRWD1
chr7105172699105172801+5'-UTR,CDS3.257915.36334K562SRSF1
chr7105177130105177194+5'-UTR,CDS,intron-Distal,intron-Proximal3.883473.68471HepG2BCLAF1
chr7105173310105173366+CDS,intron-Proximal4.945565.26064K562AQR
chr7105172803105172834+CDS,intron-Proximal4.388896.99120K562AQR
chr7105173270105173304+CDS,intron-Proximal3.366759.50532K562ZNF622
chr7105181596105181682+intron-Distal4.166465.47978K562HNRNPC
chr7105179720105179777+intron-Distal4.143683.34627K562HNRNPK
chr7105174881105174941+intron-Distal3.714923.37631K562HNRNPL
chr7105180216105180494+intron-Distal4.457275.37430HepG2KHSRP
chr7105180476105180500+intron-Distal4.0159913.94997K562KHSRP
chr7105183209105183257+intron-Distal3.970033.24603K562KHSRP
chr7105177282105177309+intron-Distal,intron-Proximal3.9618010.16833K562KHSRP
chr7105180538105180637+intron-Distal3.5014138.99448K562SF3B4
chr7105180539105180617+intron-Distal3.040763.25288HepG2HNRNPC
chr7105186458105186568+intron-Distal3.282564.32282HepG2ILF3
chr7105180137105180255+intron-Distal3.576505.24574K562HNRNPA1
chr7105177309105177372+intron-Distal3.4358213.16099K562KHSRP
chr7105180442105180473+intron-Distal3.9625417.99345K562KHSRP
chr7105180397105180432+intron-Distal3.367678.11893K562KHSRP
chr7105180327105180386+intron-Distal3.446733.16835K562U2AF1
chr7105183126105183186+intron-Proximal4.065884.07352K562KHSRP
chr7105172834105172879+intron-Proximal5.623638.88118K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RINT1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RINT1 is not available on ENCORE database.

  • 50 RBPs can affect the levels of RINT1.  








The Knockdown/knockout RNA-Seq assay for RINT1 is not available on ENCORE database.





50 RBPs can affect the gene expression of RINT1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RINT1ENSG00000135249.3282.96550364.79720-0.366502.128801.44390HepG2AKAP8L
RINT1ENSG00000135249.3348.38880459.97590-0.400902.597901.97320HepG2CELF1
RINT1ENSG00000135249.3245.35570456.59500-0.896004.889404.08940HepG2DDX6
RINT1ENSG00000135249.3292.77890439.03130-0.584503.288302.64580HepG2EIF2S1
RINT1ENSG00000135249.3488.59080662.58930-0.439503.994903.29500HepG2ETF1
RINT1ENSG00000135249.3299.64780489.43440-0.707804.939404.03440HepG2FXR1
RINT1ENSG00000135249.3328.93650454.09570-0.465202.374801.75530HepG2G3BP1
RINT1ENSG00000135249.3175.90690361.73550-1.040107.415606.39750HepG2GPKOW
RINT1ENSG00000135249.3305.44490394.15710-0.367902.074301.44730HepG2HNRNPF
RINT1ENSG00000135249.3352.40870450.48500-0.354202.308301.68450HepG2HNRNPL
RINT1ENSG00000135249.3362.78410489.60470-0.432502.152601.57180HepG2MAGOH
RINT1ENSG00000135249.3373.99030490.39600-0.390902.477701.75850HepG2NOL12
RINT1ENSG00000135249.3373.89770253.003300.563402.181401.40770HepG2PABPC1
RINT1ENSG00000135249.3403.47240496.95970-0.300702.023701.50040HepG2PUM1
RINT1ENSG00000135249.3553.48530413.627500.420102.852502.16980HepG2RBM25
RINT1ENSG00000135249.3677.07680457.310400.566006.100405.46530HepG2SRSF1
RINT1ENSG00000135249.3289.82660387.23690-0.418001.895701.30810HepG2SRSF7
RINT1ENSG00000135249.3249.08990336.49820-0.433901.990001.36280HepG2TARDBP
RINT1ENSG00000135249.3212.43530311.85200-0.553803.349602.80850HepG2TIAL1
RINT1ENSG00000135249.3468.65300330.973600.501702.737202.11190HepG2U2AF1
RINT1ENSG00000135249.31456.653301153.039200.337102.807401.61590K562AARS
RINT1ENSG00000135249.32536.477201760.985400.526306.184805.38830K562AGGF1
RINT1ENSG00000135249.33061.939101832.436700.7406013.5259011.91810K562AKAP8L
RINT1ENSG00000135249.34481.862802510.640900.8359016.2691015.00560K562AQR
RINT1ENSG00000135249.32798.428301922.764800.541306.011204.59940K562ATP5C1
RINT1ENSG00000135249.32372.009002035.774100.220402.575301.94380K562DDX47
RINT1ENSG00000135249.32471.397801971.509500.325902.673001.81640K562DKC1
RINT1ENSG00000135249.31280.839601574.92830-0.298202.693801.98200K562EIF2S2
RINT1ENSG00000135249.31130.991101736.10490-0.618304.856103.76550K562EIF4A3
RINT1ENSG00000135249.31441.309901133.188000.346903.376201.87770K562FUS
RINT1ENSG00000135249.31461.152701805.49040-0.305301.821901.31030K562FXR1
RINT1ENSG00000135249.32286.135901686.094200.439102.896502.17090K562G3BP2
RINT1ENSG00000135249.31707.248402098.93610-0.298002.152701.48070K562GRSF1
RINT1ENSG00000135249.32437.085701314.722800.890304.802303.05400K562HNRNPA2B1
RINT1ENSG00000135249.3797.812801126.83660-0.498204.740803.19700K562HNRNPF
RINT1ENSG00000135249.31482.846001839.85020-0.311202.753801.70320K562HNRNPL
RINT1ENSG00000135249.33398.919801944.492400.805606.877305.43790K562KIF1C
RINT1ENSG00000135249.3979.166801279.63700-0.386102.844101.36960K562LIN28B
RINT1ENSG00000135249.31213.786301804.18000-0.571803.088302.19950K562MAGOH
RINT1ENSG00000135249.32528.611001861.504500.441803.172301.99800K562MAK16
RINT1ENSG00000135249.32687.727001526.880100.815703.392202.39560K562NAA15
RINT1ENSG00000135249.31510.657901099.507100.458204.281103.35020K562PRPF8
RINT1ENSG00000135249.3911.063401131.50790-0.312602.293901.47780K562PSIP1
RINT1ENSG00000135249.34588.826801816.905401.3365026.8146025.11660K562PUS1
RINT1ENSG00000135249.32297.850101608.743500.514302.822401.38790K562RAVER1
RINT1ENSG00000135249.33182.071601770.606400.8456018.4748016.90660K562RBM15
RINT1ENSG00000135249.31399.893601120.129000.321602.138201.42470K562RPS19
RINT1ENSG00000135249.31022.177001530.86090-0.582703.227402.13740K562RPS3
RINT1ENSG00000135249.3743.42350978.45060-0.396302.924501.86030K562SRFBP1
RINT1ENSG00000135249.31001.337001478.18120-0.561902.791601.73360K562SRSF4
RINT1ENSG00000135249.31152.72330946.799700.283802.283501.53690K562SYNCRIP
RINT1ENSG00000135249.32399.182901634.403700.553704.902403.36180K562U2AF1
RINT1ENSG00000135249.32708.574101687.973300.6821013.7617011.95420K562U2AF2
RINT1ENSG00000135249.32039.772601715.720400.249503.191702.42270K562UPF1
RINT1ENSG00000135249.33061.278901842.526000.732304.473402.68520K562UTP18
RINT1ENSG00000135249.32423.906501420.675900.770703.494501.63660K562YTHDC2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RINT1 is not available on ENCORE database.





12 RBPs can affect the splicing of RINT1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERINT1ENSG00000135249.3chr7+105189275105189414105189082105189157105190501105190612-0.077000.000410.01003excludedK562SRSF1
SERINT1ENSG00000135249.3chr7+105187356105187530105182854105183096105190501105190612-0.081000.000060.00107excludedK562AQR
SERINT1ENSG00000135249.3chr7+105205976105206095105205682105205904105207565105208124-0.142000.000000.00000excludedK562AQR
SERINT1ENSG00000135249.3chr7+105195474105195674105192016105192154105204179105204394-0.133000.000000.00000excludedK562AQR
SERINT1ENSG00000135249.3chr7+1051892751051894141051890001051891571051905011051906120.088000.004850.06082includedK562PUS1
SERINT1ENSG00000135249.3chr7+1051892751051894141051890001051891571051905011051906120.125000.000130.02749includedK562SRSF7
SERINT1ENSG00000135249.3chr7+1051892751051894141051890001051891571051905011051906120.106000.002160.06051includedK562UTP18
SERINT1ENSG00000135249.3chr7+105187356105187530105182854105183096105187630105187780-0.053000.000510.02218excludedK562TARDBP
SERINT1ENSG00000135249.3chr7+1051892751051894141051890001051891571051905011051906120.116000.001090.02923includedK562RBM15
SERINT1ENSG00000135249.3chr7+1051892751051894141051890001051891571051905011051906120.094000.002370.05368includedK562AGGF1
SERINT1ENSG00000135249.3chr7+1051892751051894141051890001051891571051905011051906120.368000.000000.00003includedK562HNRNPC
SERINT1ENSG00000135249.3chr7+1051760181051761381051732701051733161051770111051771960.455000.000000.00000includedK562HNRNPC
SERINT1ENSG00000135249.3chr7+105195474105195674105192016105192154105204179105204394-0.206000.000000.00000excludedK562HNRNPC
A3SSRINT1ENSG00000135249.3chr7+1051904731051906121051905011051906121051890001051891570.088000.000000.00000longerK562AQR
A3SSRINT1ENSG00000135249.3chr7+1051769711051770591051770111051770591051732701051733160.090000.010200.05375longerK562AQR
A5SSRINT1ENSG00000135249.3chr7+105177011105177196105177011105177059105182854105183096-0.298000.000320.04505shorterK562SUPV3L1
MXERINT1ENSG00000135249.3chr7+1051770111051770591051771041051771961051732701051733161051828541051830960.342000.000280.012301includedK562UCHL5
MXERINT1ENSG00000135249.3chr7+1051732701051733161051770111051771961051725311051728041051828541051830960.209000.006960.084631includedK562SRSF1
MXERINT1ENSG00000135249.3chr7+1051905011051906121051907071051909331051829381051830961051920161051921540.056000.000010.000121includedK562AQR
MXERINT1ENSG00000135249.3chr7+1051919551051921541051954981051956741051907071051909331052041791052043940.150000.000000.000001includedK562AQR
MXERINT1ENSG00000135249.3chr7+1051919671051921541051954981051956741051907071051909331052041791052043940.158000.000000.000001includedK562AQR
MXERINT1ENSG00000135249.3chr7+1051919071051921541051954981051956741051907071051909331052041791052043940.147000.000000.000001includedK562AQR
MXERINT1ENSG00000135249.3chr7+1051904731051906121051907071051909331051890001051891571051920161051921540.081000.000000.000001includedK562AQR
MXERINT1ENSG00000135249.3chr7+1051873261051875301051890821051891571051829381051830961051905011051906120.056000.001960.016341includedK562AQR
MXERINT1ENSG00000135249.3chr7+105187356105187530105190501105190588105182854105183096105190707105190933-0.054000.000010.000122includedK562AQR
MXERINT1ENSG00000135249.3chr7+105187356105187530105190501105190612105182854105183096105190707105190933-0.115000.001420.012372includedK562AQR
MXERINT1ENSG00000135249.3chr7+105187356105187530105190473105190612105182938105183096105190707105190933-0.106000.004300.031682includedK562AQR
MXERINT1ENSG00000135249.3chr7+105187356105187530105190505105190612105182938105183096105190707105190933-0.106000.003570.027122includedK562AQR
MXERINT1ENSG00000135249.3chr7+105190707105190933105191967105192154105190473105190612105204179105204394-0.168000.000000.000002includedK562AQR
MXERINT1ENSG00000135249.3chr7+105195474105195674105204179105204394105192016105192154105205723105205904-0.082000.012350.075092includedK562AQR
MXERINT1ENSG00000135249.3chr7+1051770111051770591051771041051771961051732701051733161051828541051830960.219000.000780.036351includedK562IGF2BP2
MXERINT1ENSG00000135249.3chr7+1051770111051770591051771041051771961051732701051733161051828541051830960.346000.000760.019801includedK562SUPV3L1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RINT1 is not avaliable on ENCORE database.