PRPF40B

General Information

Gene Name       : PRPF40B
Gene ID             : ENSG00000110844.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PRPF40B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PRPF40BENSG00000110844.132.014.593.30ENCSR000AEF
HepG2PRPF40BENSG00000110844.135.594.525.05ENCSR985KAT
K562PRPF40BENSG00000110844.133.703.123.41ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PRPF40B is not avaliable on ENCORE database.



Proteins bound to RNA
  • PRPF40B RNA is bound by 8 proteins.  







eCLIP assay for PRPF40B is not avaliable on ENCORE database.





8 proteins are bound to PRPF40B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr125003802150038294+3'-UTR4.133034.50258HepG2LSM11
chr125003605150036134+CDS4.267183.79199HepG2PPIG
chr124997668949976736+intron-Distal,intron-Proximal6.6499025.00481K562AGGF1
chr124996893549968986+intron-Distal3.786304.14792HepG2XPO5
chr125002708450027161+intron-Distal,intron-Proximal5.569207.41223K562SF3B4
chr124997658149976680+intron-Distal,intron-Proximal5.7100715.83961K562HNRNPL
chr124997164549971759+intron-Distal4.246584.47904K562HNRNPK
chr124997656049976590+intron-Distal5.9542120.48140HepG2HNRNPL
chr124997674849976771+intron-Distal4.901156.84229K562AGGF1
chr124997661049976668+intron-Distal,intron-Proximal6.4690915.54061HepG2HNRNPL
chr124997667449976739+intron-Distal,intron-Proximal5.5655412.61036HepG2HNRNPL
chr124997654149976560+intron-Distal5.0580913.16551HepG2HNRNPL
chr124997662049976793+intron-Distal,intron-Proximal3.7785312.08465HepG2AGGF1
chr124997668049976724+intron-Distal,intron-Proximal4.495356.09580K562HNRNPL
chr124997175949971841+intron-Distal3.835353.34627K562HNRNPK
chr124997651249976590+intron-Distal3.9794916.83197K562AGGF1
chr124997659049976610+intron-Distal6.4228015.81580HepG2HNRNPL
chr124997038249970505+intron-Distal3.376783.27276HepG2HNRNPL
chr124997650349976581+intron-Distal4.114108.46806K562HNRNPL
chr124997649349976535+intron-Distal5.4892311.42320HepG2HNRNPL
chr124997663249976689+intron-Distal,intron-Proximal5.8505420.96201K562AGGF1
chr124997659049976632+intron-Distal,intron-Proximal4.3939615.17607K562AGGF1
chr124997655749976730+intron-Distal,intron-Proximal4.332336.74265K562GTF2F1
chr124997648149976679+intron-Distal,intron-Proximal4.971894.41148HepG2GTF2F1
chr124997185549971949+intron-Distal4.183813.58835K562HNRNPK
chr125003626250036354+intron-Distal,intron-Proximal3.100693.57857HepG2SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PRPF40B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PRPF40B is not available on ENCORE database.

  • 64 RBPs can affect the levels of PRPF40B.  








The Knockdown/knockout RNA-Seq assay for PRPF40B is not available on ENCORE database.





64 RBPs can affect the gene expression of PRPF40B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PRPF40BENSG00000110844.9329.42610194.681900.758703.820103.20930HepG2AKAP1
PRPF40BENSG00000110844.9428.25380308.929000.471102.282301.33080HepG2AKAP8
PRPF40BENSG00000110844.9328.28750225.328800.542803.641902.77480HepG2AKAP8L
PRPF40BENSG00000110844.9415.64240318.344900.384702.241701.61200HepG2AUH
PRPF40BENSG00000110844.9288.32110164.987500.805203.746302.65740HepG2BCCIP
PRPF40BENSG00000110844.9382.66580224.228500.771007.677106.67480HepG2CKAP4
PRPF40BENSG00000110844.9258.22490164.862200.647303.002302.28970HepG2CPSF6
PRPF40BENSG00000110844.9271.28720169.399000.679303.713402.93690HepG2DDX21
PRPF40BENSG00000110844.9331.04640186.476700.827904.985304.16640HepG2DDX3X
PRPF40BENSG00000110844.9207.80010126.799700.712503.305001.82190HepG2DDX52
PRPF40BENSG00000110844.9336.97690160.219801.072507.164106.21010HepG2DDX6
PRPF40BENSG00000110844.9203.32940145.813300.479602.341101.73140HepG2DNAJC2
PRPF40BENSG00000110844.9195.61870126.052900.633902.449801.40750HepG2EFTUD2
PRPF40BENSG00000110844.9372.27840153.991001.2734010.921109.79000HepG2EIF2S1
PRPF40BENSG00000110844.9328.79340165.706900.988405.447404.50610HepG2EIF4B
PRPF40BENSG00000110844.9183.45600277.19820-0.595502.828502.00690HepG2EIF4G2
PRPF40BENSG00000110844.9625.73110365.535500.775409.728908.71230HepG2ETF1
PRPF40BENSG00000110844.9432.31870264.818500.707003.715602.83210HepG2FIP1L1
PRPF40BENSG00000110844.9304.93140165.154500.884602.848301.81820HepG2FTO
PRPF40BENSG00000110844.9266.78200139.107800.939405.923204.79380HepG2FUBP3
PRPF40BENSG00000110844.9291.78030171.734000.764604.193103.35440HepG2FXR1
PRPF40BENSG00000110844.9329.02960159.283701.046507.560906.48650HepG2G3BP1
PRPF40BENSG00000110844.9232.95330161.346900.529802.048101.44170HepG2HNRNPK
PRPF40BENSG00000110844.9391.37930164.101001.2539016.5553015.16810HepG2HNRNPU
PRPF40BENSG00000110844.9249.73520161.899600.625202.890902.20360HepG2IGF2BP2
PRPF40BENSG00000110844.9292.15960162.859800.843004.263502.99230HepG2KHSRP
PRPF40BENSG00000110844.9267.97240128.463001.060604.218802.93130HepG2METAP2
PRPF40BENSG00000110844.9357.30300176.811001.014807.257806.25560HepG2NCBP2
PRPF40BENSG00000110844.9405.50160290.828200.479403.311402.47860HepG2NOL12
PRPF40BENSG00000110844.9296.43770157.433100.912905.810504.77750HepG2PABPC4
PRPF40BENSG00000110844.9269.22410162.426900.728904.933203.84320HepG2PARN
PRPF40BENSG00000110844.9353.04320175.035601.012109.737308.83390HepG2PTBP1
PRPF40BENSG00000110844.9314.87220228.430000.462902.839902.21840HepG2PUS1
PRPF40BENSG00000110844.9424.46290189.532901.1631012.4203011.23590HepG2QKI
PRPF40BENSG00000110844.9421.18380287.082800.552903.872602.87750HepG2RBM15
PRPF40BENSG00000110844.9277.52250149.170400.895504.590803.38440HepG2RPS10
PRPF40BENSG00000110844.9218.50460119.471800.870904.566103.79700HepG2RPS19
PRPF40BENSG00000110844.9200.28480146.136900.454601.943201.38700HepG2SAFB2
PRPF40BENSG00000110844.9315.65920228.657500.465101.953901.38490HepG2SF3A3
PRPF40BENSG00000110844.9411.70010182.205301.1759013.9707012.80020HepG2SF3B4
PRPF40BENSG00000110844.9244.43160170.416300.520302.749902.10730HepG2SMN1
PRPF40BENSG00000110844.9245.72630155.033300.664403.002002.00030HepG2SMNDC1
PRPF40BENSG00000110844.9276.69350147.962200.903005.161602.91710HepG2SND1
PRPF40BENSG00000110844.9318.41230196.400800.697002.919302.11470HepG2SNRNP70
PRPF40BENSG00000110844.9242.17160345.05380-0.510803.467502.92610HepG2SRFBP1
PRPF40BENSG00000110844.9384.60950274.130000.488402.593201.98260HepG2SRSF5
PRPF40BENSG00000110844.9218.10540154.744000.495002.525301.99240HepG2SRSF9
PRPF40BENSG00000110844.9340.61890198.919400.775904.671403.20630HepG2STIP1
PRPF40BENSG00000110844.9260.28410170.987900.606103.572502.95020HepG2TAF15
PRPF40BENSG00000110844.9277.09840173.856300.672403.460902.66090HepG2TARDBP
PRPF40BENSG00000110844.9290.77770157.079200.888306.902805.58940HepG2TIA1
PRPF40BENSG00000110844.9283.06690159.439800.828005.823005.14840HepG2TIAL1
PRPF40BENSG00000110844.9227.58500160.881200.500302.550202.00430HepG2TRIM56
PRPF40BENSG00000110844.9156.3932095.389600.713202.705501.95500HepG2UCHL5
PRPF40BENSG00000110844.9329.32020202.783500.699505.681504.73720HepG2UPF1
PRPF40BENSG00000110844.9382.48590223.024100.778107.977607.17380HepG2ZNF622
PRPF40BENSG00000110844.9355.11770269.128800.399902.363301.83190K562AGGF1
PRPF40BENSG00000110844.9131.99700235.59680-0.835804.402803.69470K562AQR
PRPF40BENSG00000110844.9465.24820321.606400.532604.206502.71550K562CCDC124
PRPF40BENSG00000110844.943.7613096.19420-1.136303.582302.75300K562G3BP2
PRPF40BENSG00000110844.9175.24930113.323800.628902.127801.34550K562PSIP1
PRPF40BENSG00000110844.9229.16540327.79590-0.516402.773001.95610K562PUF60
PRPF40BENSG00000110844.9252.83350348.66630-0.463702.343601.36820K562PUM1
PRPF40BENSG00000110844.976.25570134.29380-0.816503.041902.30290K562SRSF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PRPF40B is not available on ENCORE database.





2 RBPs can affect the splicing of PRPF40B :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
RIPRPF40BENSG00000110844.9chr12+5003601750036458500360175003615550036362500364580.803000.000020.00045includedHepG2U2AF1
RIPRPF40BENSG00000110844.9chr12+5002679650027330500267965002690750027209500273300.432000.002600.02708includedHepG2RBM22

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PRPF40B is not avaliable on ENCORE database.