NIT1

General Information

Gene Name       : NIT1
Gene ID             : ENSG00000158793.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NIT1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NIT1ENSG00000158793.1313.1618.5115.84ENCSR000AEF
HepG2NIT1ENSG00000158793.1331.5227.4029.46ENCSR985KAT
K562NIT1ENSG00000158793.1335.5532.8834.22ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NIT1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NIT1 RNA is bound by 10 proteins.  







eCLIP assay for NIT1 is not avaliable on ENCORE database.





10 proteins are bound to NIT1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1161088092161088202+5'-UTR,intron-Distal,intron-Proximal5.063674.05003HepG2PCBP2
chr1161088073161088196+5'-UTR,intron-Distal,intron-Proximal3.106267.01804HepG2CSTF2T
chr1161088081161088207+5'-UTR,intron-Distal,intron-Proximal5.7309513.08439HepG2GTF2F1
chr1161088614161088669+5'-UTR,CDS,intron-Distal3.606213.59112HepG2PPIG
chr1161087944161087993+5'-UTR,CDS,intron-Proximal3.780923.39593HepG2PRPF4
chr1161088057161088221+5'-UTR,intron-Distal,intron-Proximal6.1367520.18297HepG2PRPF4
chr1161088097161088205+5'-UTR,intron-Distal,intron-Proximal5.595069.73136K562GTF2F1
chr1161088200161088409+5'-UTR,CDS,intron-Distal,intron-Proximal3.052503.32917K562HNRNPA1
chr1161088090161088180+5'-UTR,intron-Distal,intron-Proximal4.467243.56121HepG2FASTKD2
chr1161090374161090502+CDS,intron-Distal3.498684.52386HepG2PABPN1
chr1161089608161089685+CDS,intron-Proximal3.206193.18660HepG2PABPN1
chr1161089329161089387+CDS4.297643.49905HepG2PPIG
chr1161089050161089139+CDS4.436564.46921K562RBM15
chr1161089223161089318+CDS,intron-Proximal3.360676.58352HepG2EFTUD2
chr1161090285161090348+CDS,intron-Distal,intron-Proximal4.616565.85773HepG2PABPN1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NIT1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NIT1 is not available on ENCORE database.

  • 55 RBPs can affect the levels of NIT1.  








The Knockdown/knockout RNA-Seq assay for NIT1 is not available on ENCORE database.





55 RBPs can affect the gene expression of NIT1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NIT1ENSG00000158793.9310.46100434.29730-0.484304.006603.23420HepG2CKAP4
NIT1ENSG00000158793.9591.45910364.430600.698506.261805.28950HepG2DDX21
NIT1ENSG00000158793.9534.56610687.88970-0.363801.914001.38400HepG2DDX3X
NIT1ENSG00000158793.9489.16710349.418500.485303.215402.16210HepG2DHX30
NIT1ENSG00000158793.9576.46850415.637700.471804.103903.31140HepG2DKC1
NIT1ENSG00000158793.9471.89430362.282600.381202.534701.85690HepG2DNAJC21
NIT1ENSG00000158793.9900.47430627.796900.520303.586202.86080HepG2EIF4A3
NIT1ENSG00000158793.9435.09050611.20120-0.490302.334701.70020HepG2EIF4B
NIT1ENSG00000158793.9406.67770220.640700.882106.052905.13270HepG2GPKOW
NIT1ENSG00000158793.9509.98700365.753200.479502.314801.71930HepG2HNRNPA1
NIT1ENSG00000158793.9329.52380210.562200.646003.456102.76150HepG2HNRNPLL
NIT1ENSG00000158793.9516.92850394.326900.390502.393301.71780HepG2IGF2BP1
NIT1ENSG00000158793.9499.73610412.815700.275601.933001.30630HepG2ILF2
NIT1ENSG00000158793.9539.53770397.106300.442104.138502.90330HepG2KIF1C
NIT1ENSG00000158793.9347.84570214.763200.695603.032002.01440HepG2MTPAP
NIT1ENSG00000158793.9483.73360652.14260-0.431002.466701.86740HepG2NCBP2
NIT1ENSG00000158793.9264.03870186.709300.499902.032301.38650HepG2NSUN2
NIT1ENSG00000158793.9509.05510632.11340-0.312402.330101.76340HepG2PCBP1
NIT1ENSG00000158793.9271.76230437.08230-0.685603.688002.49630HepG2PCBP2
NIT1ENSG00000158793.9200.47730287.06080-0.517902.389501.63680HepG2PRPF8
NIT1ENSG00000158793.9500.56130698.15490-0.480005.810505.01560HepG2PUM1
NIT1ENSG00000158793.9601.34760442.509300.442404.277803.54190HepG2PUS1
NIT1ENSG00000158793.9230.71170421.70830-0.870204.203703.34420HepG2RAVER1
NIT1ENSG00000158793.9544.69450671.51980-0.302002.180901.70620HepG2RBM22
NIT1ENSG00000158793.9496.40530632.20850-0.348902.193601.58740HepG2RBM25
NIT1ENSG00000158793.9608.98260431.428800.497203.272902.53970HepG2RPLP0
NIT1ENSG00000158793.9165.25610283.95310-0.780904.181703.23860HepG2RRP9
NIT1ENSG00000158793.9453.09200669.64730-0.563606.015005.20020HepG2SF3B4
NIT1ENSG00000158793.9446.22420231.894800.944205.558204.43970HepG2SNRNP70
NIT1ENSG00000158793.9436.42590758.44490-0.7973013.2364012.35730HepG2SRFBP1
NIT1ENSG00000158793.9580.08360698.97260-0.269001.886201.47410HepG2SRSF1
NIT1ENSG00000158793.9386.43270649.35920-0.748809.920808.83280HepG2SRSF5
NIT1ENSG00000158793.9473.32200568.65640-0.264701.777201.31760HepG2SRSF9
NIT1ENSG00000158793.91042.08210658.488700.6621011.6652010.75490HepG2SSB
NIT1ENSG00000158793.9509.77590370.537000.460101.980801.39440HepG2SUPV3L1
NIT1ENSG00000158793.9304.37390396.20640-0.380402.447901.91050HepG2TRIM56
NIT1ENSG00000158793.9246.19410394.20440-0.679104.244103.47480HepG2U2AF1
NIT1ENSG00000158793.9495.20420399.716000.308902.037901.42250HepG2UPF1
NIT1ENSG00000158793.9598.18820339.224400.818304.703203.37720HepG2UPF2
NIT1ENSG00000158793.9692.11900364.753900.924008.153106.92160HepG2XRN2
NIT1ENSG00000158793.9477.47110709.23300-0.570806.412805.60100K562AGGF1
NIT1ENSG00000158793.9438.14770737.98140-0.752208.092506.91760K562AKAP8L
NIT1ENSG00000158793.9571.20440827.52090-0.534804.209103.51490K562AQR
NIT1ENSG00000158793.9566.43000774.30570-0.451004.398903.21830K562ATP5C1
NIT1ENSG00000158793.9586.75990794.16870-0.436704.454603.30520K562DKC1
NIT1ENSG00000158793.9261.19440404.82910-0.632203.839002.75160K562EFTUD2
NIT1ENSG00000158793.9592.49400811.73350-0.454204.031602.90010K562EIF4G2
NIT1ENSG00000158793.9148.00520269.62550-0.865303.693602.85050K562G3BP2
NIT1ENSG00000158793.9310.43790442.09890-0.510103.733402.41860K562GLRX3
NIT1ENSG00000158793.9518.45970355.777700.543203.796403.11040K562HNRNPC
NIT1ENSG00000158793.9410.26670283.761900.531802.859101.91110K562HNRNPM
NIT1ENSG00000158793.9796.51060467.675300.768108.156606.80670K562HSPD1
NIT1ENSG00000158793.9527.07090783.20950-0.571404.838103.69030K562KIF1C
NIT1ENSG00000158793.9606.99840877.38870-0.531505.128203.81300K562MBNL1
NIT1ENSG00000158793.9341.86950614.98360-0.847106.158504.64500K562NAA15
NIT1ENSG00000158793.9238.41060435.26520-0.868407.352205.72850K562PCBP2
NIT1ENSG00000158793.9225.33270393.94310-0.805905.330604.28870K562PRPF8
NIT1ENSG00000158793.9600.55400475.293900.337402.225601.61980K562PTBP1
NIT1ENSG00000158793.9389.50880731.92970-0.910009.508208.55080K562PUS1
NIT1ENSG00000158793.9387.93550713.11000-0.8783012.1199010.88150K562RBM15
NIT1ENSG00000158793.9669.13470547.576000.289102.246401.59460K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NIT1 is not available on ENCORE database.





7 RBPs can affect the splicing of NIT1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENIT1ENSG00000158793.9chr1+161088575161088671161087890161087968161088923161089178-0.276000.000000.00002excludedK562RBM22
SENIT1ENSG00000158793.9chr1+161088575161088671161087890161087968161088923161089178-0.175000.000100.00603excludedK562TARDBP
RINIT1ENSG00000158793.9chr1+1610889231610894021610889231610891781610892981610894020.151000.004200.02689includedK562PUS1
RINIT1ENSG00000158793.9chr1+1610889231610894021610889231610891781610892981610894020.348000.003710.02671includedHepG2U2AF2
RINIT1ENSG00000158793.9chr1+1610889231610894021610889231610891781610892981610894020.135000.008340.07815includedHepG2PRPF8
RINIT1ENSG00000158793.9chr1+1610889231610894021610889231610891781610892981610894020.208000.000000.00013includedK562RBM22
RINIT1ENSG00000158793.9chr1+1610889231610894021610889231610891781610892981610894020.091000.012480.09231includedHepG2TAF15
RINIT1ENSG00000158793.9chr1+1610889231610894021610889231610891781610892981610894020.201000.006230.06794includedK562U2AF2
RINIT1ENSG00000158793.9chr1+1610889231610894021610889231610891781610892981610894020.169000.000000.00007includedHepG2RBM22
RINIT1ENSG00000158793.9chr1+1610889231610894021610889231610891781610892981610894020.127000.000520.00802includedHepG2HNRNPK

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NIT1 is not avaliable on ENCORE database.