GALNT12

General Information

Gene Name       : GALNT12
Gene ID             : ENSG00000119514.6
Essential Gene : No

Functions

Localization

Domains (AlphaFold: GALNT12)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GALNT12ENSG00000119514.63.652.903.27ENCSR000AEF
HepG2GALNT12ENSG00000119514.60.150.090.12ENCSR985KAT
K562GALNT12ENSG00000119514.630.6230.4430.53ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GALNT12 is not avaliable on ENCORE database.



Proteins bound to RNA
  • GALNT12 RNA is bound by 24 proteins.  







eCLIP assay for GALNT12 is not avaliable on ENCORE database.





24 proteins are bound to GALNT12 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr9101611676101611720+3'-UTR4.5083420.33963K562PUM2
chr9101611378101611459+3'-UTR3.755788.66760K562UCHL5
chr9101611831101611896+3'-UTR3.267677.33476K562PABPC4
chr9101611802101611881+3'-UTR3.605653.34554K562NOLC1
chr9101611827101611879+3'-UTR4.186525.65050K562DDX55
chr9101611884101611942+3'-UTR4.7537014.67372K562ZC3H11A
chr9101611361101611483+3'-UTR,CDS3.4267313.17713K562ZNF622
chr9101611818101611884+3'-UTR3.7864014.08007K562ZC3H11A
chr9101611729101611884+3'-UTR3.267337.90855K562FUS
chr9101611808101611901+3'-UTR3.297506.45752K562DDX6
chr9101611360101611455+3'-UTR,CDS5.4481811.72595K562GRWD1
chr9101612216101612279+3'-UTR3.133474.14805K562ZC3H11A
chr9101585687101585706+CDS3.470403.99381K562BUD13
chr9101606383101606409+CDS4.255566.81238K562ZNF622
chr9101611219101611302+CDS,intron-Proximal3.122239.64855K562BUD13
chr9101602334101602413+CDS3.9309318.90267K562ZNF622
chr9101597595101597627+CDS3.302115.33133K562BUD13
chr9101589222101589267+CDS,intron-Proximal3.284595.11990K562AQR
chr9101570042101570280+CDS3.585303.34940K562HNRNPM
chr9101589032101589068+CDS,intron-Proximal3.534766.12893K562BUD13
chr9101608403101608450+CDS,intron-Proximal3.6374011.26716K562AQR
chr9101594120101594152+CDS3.048844.27864K562DDX24
chr9101611180101611243+CDS,intron-Proximal3.502756.52492K562SF3B4
chr9101602303101602334+CDS4.2299210.71118K562ZNF622
chr9101606434101606490+CDS3.331788.15265K562UCHL5
chr9101608397101608462+CDS,intron-Proximal3.147505.12902K562SF3B4
chr9101602283101602303+CDS,intron-Proximal3.299017.01182K562ZNF622
chr9101597540101597681+CDS,intron-Proximal3.1769116.45493K562PRPF8
chr9101597575101597745+CDS,intron-Proximal4.1353524.91222K562EFTUD2
chr9101602380101602412+CDS4.353853.65778K562GRWD1
chr9101602285101602343+CDS3.0058111.55199K562UCHL5
chr9101602343101602410+CDS3.7110011.84285K562UCHL5
chr9101602286101602330+CDS3.204813.36034K562SRSF1
chr9101608655101608720+intron-Distal3.473164.80214K562HNRNPK
chr9101598955101599048+intron-Distal4.9092132.59745K562RBFOX2
chr9101599048101599136+intron-Distal4.9637537.19367K562RBFOX2
chr9101598963101599108+intron-Distal4.4125725.83256K562DROSHA
chr9101606786101606814+intron-Distal3.038096.00234K562KHSRP
chr9101606759101606786+intron-Distal3.215456.42458K562KHSRP
chr9101584972101585074+intron-Distal3.595173.73564K562RBFOX2
chr9101602648101602739+intron-Distal4.684884.58968K562PRPF8
chr9101598881101598927+intron-Distal4.368636.59655K562PTBP1
chr9101574503101574588+intron-Distal3.021323.28806K562KHSRP
chr9101599057101599117+intron-Distal4.679446.98436K562DDX6
chr9101597164101597293+intron-Distal4.724574.40618K562PTBP1
chr9101595036101595131+intron-Distal3.326884.76825K562KHSRP
chr9101602417101602467+intron-Proximal5.066314.86944K562AQR
chr9101599191101599238+intron-Proximal5.7491520.65991K562SF3B4
chr9101597659101597746+intron-Proximal4.6097712.96803K562TIA1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GALNT12 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GALNT12 is not available on ENCORE database.

  • 46 RBPs can affect the levels of GALNT12.  








The Knockdown/knockout RNA-Seq assay for GALNT12 is not available on ENCORE database.





46 RBPs can affect the gene expression of GALNT12 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GALNT12ENSG00000119514.555.276202.417104.515209.818808.88340HepG2AKAP1
GALNT12ENSG00000119514.516.795003.453302.281901.976101.40330HepG2PUM2
GALNT12ENSG00000119514.5914.670501144.22490-0.323002.402201.30890K562AARS
GALNT12ENSG00000119514.51463.178401708.62670-0.223702.246701.72670K562AGGF1
GALNT12ENSG00000119514.51873.990102351.35260-0.327403.262201.91430K562APOBEC3C
GALNT12ENSG00000119514.5981.380001899.47730-0.9527015.9429014.69180K562AQR
GALNT12ENSG00000119514.51049.319301820.84640-0.795206.769105.81500K562DDX47
GALNT12ENSG00000119514.5634.043001060.84930-0.742608.708107.00270K562EFTUD2
GALNT12ENSG00000119514.51048.935601325.87400-0.338004.063002.57950K562EIF2S1
GALNT12ENSG00000119514.51900.696301240.462300.6156012.3186010.95870K562EIF2S2
GALNT12ENSG00000119514.5405.55110672.54340-0.729703.909302.68980K562EIF3A
GALNT12ENSG00000119514.5537.230301135.69580-1.0800010.253708.09020K562EIF3D
GALNT12ENSG00000119514.5836.003401198.13400-0.519206.862205.62120K562EIF3G
GALNT12ENSG00000119514.5519.081901261.16620-1.2807026.5894023.70210K562EIF4A3
GALNT12ENSG00000119514.52209.778002664.83150-0.270103.673002.59120K562EIF4G2
GALNT12ENSG00000119514.5766.635601059.23710-0.466405.182803.27780K562FUS
GALNT12ENSG00000119514.5673.442501311.55260-0.9616022.7772021.15940K562FXR1
GALNT12ENSG00000119514.5879.314401251.76320-0.509505.513404.69940K562HNRNPC
GALNT12ENSG00000119514.5770.951401117.93560-0.536105.581403.88260K562HNRNPF
GALNT12ENSG00000119514.51196.412501688.58250-0.497104.611402.98480K562HNRNPK
GALNT12ENSG00000119514.5955.499201212.49770-0.343702.742701.36250K562LARP7
GALNT12ENSG00000119514.5933.163501269.80570-0.444403.359001.70840K562LIN28B
GALNT12ENSG00000119514.5869.821401776.66680-1.0304022.1411019.59200K562MAGOH
GALNT12ENSG00000119514.51309.890501773.15350-0.436904.975503.69570K562MATR3
GALNT12ENSG00000119514.5838.416701580.90270-0.9150015.7471013.30780K562PCBP2
GALNT12ENSG00000119514.5500.654001032.33240-1.0440014.8430013.09020K562PRPF8
GALNT12ENSG00000119514.51081.974501726.09840-0.6738010.982409.72150K562PTBP1
GALNT12ENSG00000119514.51578.917702907.49250-0.8808018.3188016.15220K562PUF60
GALNT12ENSG00000119514.51173.083301655.44900-0.496905.320204.11050K562RBM22
GALNT12ENSG00000119514.5908.476601253.21040-0.464104.810402.97650K562RBM25
GALNT12ENSG00000119514.5552.864601051.43620-0.9274010.492708.87440K562RPS19
GALNT12ENSG00000119514.5539.07930787.10760-0.546104.930303.48340K562SAFB
GALNT12ENSG00000119514.5581.06160813.83810-0.486103.755802.05360K562SDAD1
GALNT12ENSG00000119514.5548.40840883.28570-0.687604.459002.44990K562SERBP1
GALNT12ENSG00000119514.5801.390101373.78690-0.7776013.8154011.79640K562SF3B4
GALNT12ENSG00000119514.5775.59650970.86260-0.324002.194401.30210K562SRFBP1
GALNT12ENSG00000119514.51298.428701528.44320-0.235302.786201.84750K562SRPK2
GALNT12ENSG00000119514.5699.795701692.08470-1.2738024.2514022.14940K562SRSF1
GALNT12ENSG00000119514.5670.71330999.32320-0.575304.738703.37780K562SUPV3L1
GALNT12ENSG00000119514.5581.94920886.13970-0.606604.614503.54710K562SYNCRIP
GALNT12ENSG00000119514.51316.226701712.64480-0.379803.122702.37090K562TARDBP
GALNT12ENSG00000119514.51345.010901652.00130-0.296602.611001.81770K562TIA1
GALNT12ENSG00000119514.5855.551701147.00550-0.422903.537602.44270K562TRIM56
GALNT12ENSG00000119514.5871.663301280.74170-0.555104.623803.13670K562U2AF1
GALNT12ENSG00000119514.5907.996401322.54320-0.542607.101605.82340K562U2AF2
GALNT12ENSG00000119514.51185.034701426.47390-0.267503.229102.32170K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GALNT12 is not available on ENCORE database.





18 RBPs can affect the splicing of GALNT12 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEGALNT12ENSG00000119514.5chr9+101597530101597648101594053101594239101599253101599430-0.152000.001350.02679excludedK562SF3B4
SEGALNT12ENSG00000119514.5chr9+1015956131015957951015940531015942391015975301015976480.109000.001290.04536includedK562PRPF8
SEGALNT12ENSG00000119514.5chr9+101597530101597648101594053101594239101599253101599430-0.092000.000010.00067excludedK562AKAP8L
SEGALNT12ENSG00000119514.5chr9+1015956131015957951015940531015942391015975301015976480.117000.000010.00101includedK562FXR1
SEGALNT12ENSG00000119514.5chr9+1016109541016111421016082791016084051016112331016119160.140000.000000.00009includedK562PUS1
SEGALNT12ENSG00000119514.5chr9+101608258101608405101606377101606491101611233101612363-0.100000.000000.00000excludedK562PUS1
SEGALNT12ENSG00000119514.5chr9+101595613101595795101594053101594239101597530101597648-0.125000.000050.03038excludedK562BUD13
SEGALNT12ENSG00000119514.5chr9+1015956131015957951015940531015942391015975301015976480.126000.000240.01707includedK562EFTUD2
SEGALNT12ENSG00000119514.5chr9+1015721691015723071015699801015703511015855371015857070.185000.004670.07717includedK562U2AF1
SEGALNT12ENSG00000119514.5chr9+101597530101597648101594053101594239101599253101599430-0.099000.004890.08001excludedK562U2AF1
SEGALNT12ENSG00000119514.5chr9+101595613101595795101594053101594239101597530101597648-0.056000.001680.09244excludedK562HNRNPL
SEGALNT12ENSG00000119514.5chr9+101610954101611142101608258101608405101611233101611916-0.091000.000230.06442excludedK562PPIL4
SEGALNT12ENSG00000119514.5chr9+101597530101597648101594053101594239101599253101599430-0.054000.000030.00558excludedK562HNRNPUL1
SEGALNT12ENSG00000119514.5chr9+1015956131015957951015940531015942391015975301015976480.077000.004560.06730includedK562U2AF2
SEGALNT12ENSG00000119514.5chr9+101608258101608405101606377101606491101611233101612363-0.206000.000000.00000excludedK562U2AF2
SEGALNT12ENSG00000119514.5chr9+101608258101608405101606377101606491101611233101612363-0.106000.000020.00184excludedK562TARDBP
SEGALNT12ENSG00000119514.5chr9+101597530101597648101594053101594239101599253101599430-0.132000.000000.00006excludedK562HNRNPU
SEGALNT12ENSG00000119514.5chr9+101608182101608405101606377101606491101611233101612363-0.120000.003460.09571excludedK562HNRNPU
SEGALNT12ENSG00000119514.5chr9+101597530101597648101594053101594239101599253101599430-0.057000.001420.03551excludedK562RBM15
SEGALNT12ENSG00000119514.5chr9+1016109541016111421016082581016084051016112331016119160.194000.000000.00000includedK562AGGF1
SEGALNT12ENSG00000119514.5chr9+101597530101597648101594053101594239101599253101599430-0.154000.000000.00000excludedK562AGGF1
SEGALNT12ENSG00000119514.5chr9+101608182101608405101606377101606491101611233101612363-0.145000.003050.06455excludedK562AGGF1
A5SSGALNT12ENSG00000119514.5chr9+1015993191015995541015993191015994301016022831016024150.063000.000000.00001longerK562PUS1
A5SSGALNT12ENSG00000119514.5chr9+1015956131015958581015956131015957951015975301015976480.261000.000240.02508longerK562RBM15
MXEGALNT12ENSG00000119514.5chr9+1015940211015942391015975301015976481015890331015892231015992531015994300.118000.001550.050261includedK562AGGF1
MXEGALNT12ENSG00000119514.5chr9+101594053101594239101597530101597648101589033101589223101599253101599430-0.180000.001360.048532includedK562LIN28B
MXEGALNT12ENSG00000119514.5chr9+101594053101594239101597530101597648101589033101589223101599253101599430-0.182000.004150.060822includedK562HNRNPC
MXEGALNT12ENSG00000119514.5chr9+1015940211015942391015975301015976481015890331015892231015992531015994300.135000.000340.017631includedK562HNRNPU
MXEGALNT12ENSG00000119514.5chr9+101594053101594239101597530101597561101589033101589223101599253101599430-0.133000.001970.036102includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for GALNT12 is not avaliable on ENCORE database.