FAM173A

General Information

Gene Name       : FAM173A
Gene ID             : ENSG00000103254.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: FAM173A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878FAM173AENSG00000103254.90.000.420.21ENCSR000AEF
HepG2FAM173AENSG00000103254.95.690.042.87ENCSR985KAT
K562FAM173AENSG00000103254.96.491.894.19ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for FAM173A is not avaliable on ENCORE database.



Proteins bound to RNA
  • FAM173A RNA is bound by 6 proteins.  







eCLIP assay for FAM173A is not avaliable on ENCORE database.





6 proteins are bound to FAM173A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr16772277772365+3'-UTR,CDS,intron-Proximal3.372203.91614K562BUD13
chr16772444772538+3'-UTR,CDS3.786528.05708K562PABPC4
chr16772434772496+3'-UTR,CDS4.251183.02060K562LIN28B
chr16771149771259+5'-UTR3.131894.88807HepG2NCBP2
chr16771250771341+5'-UTR,CDS4.149009.31832HepG2DDX3X
chr16771160771195+5'-UTR4.351195.35746HepG2DDX3X
chr16772084772172+CDS,intron-Distal,intron-Proximal4.023906.08299HepG2PPIG
chr16771580771670+CDS,intron-Proximal5.0471910.52122K562DDX3X
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for FAM173A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for FAM173A is not available on ENCORE database.

  • 59 RBPs can affect the levels of FAM173A.  








The Knockdown/knockout RNA-Seq assay for FAM173A is not available on ENCORE database.





59 RBPs can affect the gene expression of FAM173A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
FAM173AENSG00000103254.585.1095033.313201.353103.248402.58460HepG2DDX6
FAM173AENSG00000103254.527.103507.396101.873502.671501.33030HepG2HNRNPA0
FAM173AENSG00000103254.521.231704.685802.179802.160701.53930HepG2HNRNPC
FAM173AENSG00000103254.575.5228030.454601.310203.358702.44320HepG2LARP4
FAM173AENSG00000103254.5103.8629035.713801.540005.568404.64770HepG2MAGOH
FAM173AENSG00000103254.5111.0718035.901401.629305.721204.83980HepG2MATR3
FAM173AENSG00000103254.5103.2683036.737001.491004.862804.03610HepG2NCBP2
FAM173AENSG00000103254.549.5092025.569400.953201.858201.34380HepG2PCBP1
FAM173AENSG00000103254.518.128204.152102.126202.292101.61420HepG2PPIL4
FAM173AENSG00000103254.559.1624026.019701.185003.047102.47840HepG2PTBP1
FAM173AENSG00000103254.530.697408.586701.837802.663602.07710HepG2PUF60
FAM173AENSG00000103254.543.240309.113302.246205.242104.47910HepG2PUM1
FAM173AENSG00000103254.545.212709.910802.189603.928002.73100HepG2RBM27
FAM173AENSG00000103254.578.0526028.955901.430504.192803.55200HepG2NELFE
FAM173AENSG00000103254.561.6734026.971401.193102.802902.18250HepG2RECQL
FAM173AENSG00000103254.544.260909.138002.276004.100303.13470HepG2RPS2
FAM173AENSG00000103254.522.988604.146502.470903.271102.58120HepG2SAFB2
FAM173AENSG00000103254.563.8189027.086401.236302.983302.37320HepG2SF3B4
FAM173AENSG00000103254.530.364408.229501.883402.909102.19100HepG2SLBP
FAM173AENSG00000103254.518.384004.837201.926101.927101.37440HepG2SMN1
FAM173AENSG00000103254.541.657108.475902.297004.929004.13140HepG2SRSF5
FAM173AENSG00000103254.528.088807.642001.877903.025701.87230HepG2STIP1
FAM173AENSG00000103254.551.934409.641302.429306.378105.50290HepG2SUCLG1
FAM173AENSG00000103254.521.815404.529602.267802.654502.16290HepG2TIAL1
FAM173AENSG00000103254.529.770304.563202.705702.600102.04990HepG2TRIM56
FAM173AENSG00000103254.545.797908.385802.449202.715501.85040HepG2TUFM
FAM173AENSG00000103254.539.427408.874302.151403.049902.17330HepG2UBE2L3
FAM173AENSG00000103254.529.938403.834602.964804.498903.52970HepG2UCHL5
FAM173AENSG00000103254.5160.7133088.459100.861304.120003.45220K562AGGF1
FAM173AENSG00000103254.5149.0595097.213900.616602.279001.39960K562AKAP8
FAM173AENSG00000103254.5234.4976092.048301.3490010.573009.19030K562AKAP8L
FAM173AENSG00000103254.588.04500305.19760-1.793407.401106.51680K562AQR
FAM173AENSG00000103254.5219.7635096.585901.186007.406905.80630K562ATP5C1
FAM173AENSG00000103254.578.5222038.841301.015402.574801.32210K562BCCIP
FAM173AENSG00000103254.5149.8897037.545601.9971012.4935010.42360K562BCLAF1
FAM173AENSG00000103254.528.7487066.20570-1.203502.711601.66560K562CNOT7
FAM173AENSG00000103254.5199.62060124.651200.679303.093901.91880K562CPEB4
FAM173AENSG00000103254.5237.56040145.861600.703603.514901.99220K562DDX6
FAM173AENSG00000103254.597.9230032.460201.592905.848103.10470K562EIF3H
FAM173AENSG00000103254.565.89400150.30260-1.189703.282302.39190K562EIF4A3
FAM173AENSG00000103254.574.06570141.79400-0.936904.631702.25680K562FUBP3
FAM173AENSG00000103254.50.000009.35190-99999.999992.680901.98750K562G3BP2
FAM173AENSG00000103254.560.6473028.578301.085402.816101.61110K562IGF2BP3
FAM173AENSG00000103254.597.2814029.513301.720707.799006.36140K562MAGOH
FAM173AENSG00000103254.593.3751029.449401.664702.663901.75880K562MATR3
FAM173AENSG00000103254.5114.98310198.86360-0.790403.067902.21910K562MTPAP
FAM173AENSG00000103254.547.97740150.09550-1.645509.725207.45980K562NCBP2
FAM173AENSG00000103254.526.9284063.60430-1.240002.828401.58060K562PABPC1
FAM173AENSG00000103254.561.2900028.861601.086402.696401.36540K562PCBP1
FAM173AENSG00000103254.531.6054069.22800-1.131202.698201.87760K562PCBP3
FAM173AENSG00000103254.5154.7215066.585601.216306.501005.14860K562PPIG
FAM173AENSG00000103254.5160.6831028.676002.4862020.0678018.35350K562PTBP1
FAM173AENSG00000103254.5180.7683088.942301.023105.880305.04370K562RBM15
FAM173AENSG00000103254.571.9471027.482301.388304.381903.29170K562RBM22
FAM173AENSG00000103254.566.9518026.801101.320703.601701.95540K562RBM34
FAM173AENSG00000103254.564.8247028.924201.164203.077801.91780K562NELFE
FAM173AENSG00000103254.584.90130218.04340-1.360809.627608.17540K562SF3A3
FAM173AENSG00000103254.568.1983028.115001.278303.366402.59150K562SRSF1
FAM173AENSG00000103254.543.9762013.722001.680102.805801.74400K562SRSF4
FAM173AENSG00000103254.573.8018026.559801.474304.754903.30890K562SRSF5
FAM173AENSG00000103254.5148.7659028.447802.3866016.3471014.34580K562TARDBP
FAM173AENSG00000103254.594.8035027.442801.788407.459906.01270K562TIA1
FAM173AENSG00000103254.567.7643026.944701.330402.565801.52020K562TRA2A
FAM173AENSG00000103254.5132.19180234.25060-0.825405.018304.08130K562UPF1
FAM173AENSG00000103254.5108.76020200.43650-0.882004.827703.65430K562WDR3
FAM173AENSG00000103254.588.24710208.46060-1.240205.447804.30070K562WDR43
FAM173AENSG00000103254.5246.47820343.88090-0.480402.067501.33290K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for FAM173A is not available on ENCORE database.





1 RBPs can affect the splicing of FAM173A :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEFAM173AENSG00000103254.5chr16+7720837721347718007719417723087726010.190000.007050.09918includedK562SRSF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for FAM173A is not avaliable on ENCORE database.