CLCN4

General Information

Gene Name       : CLCN4
Gene ID             : ENSG00000073464.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CLCN4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CLCN4ENSG00000073464.113.101.982.54ENCSR000AEF
HepG2CLCN4ENSG00000073464.111.961.621.79ENCSR985KAT
K562CLCN4ENSG00000073464.110.080.060.07ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CLCN4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CLCN4 RNA is bound by 1 proteins.  







eCLIP assay for CLCN4 is not avaliable on ENCORE database.





1 proteins are bound to CLCN4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX1017735510177458+intron-Distal3.846743.88460HepG2PCBP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CLCN4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CLCN4 is not available on ENCORE database.

  • 57 RBPs can affect the levels of CLCN4.  








The Knockdown/knockout RNA-Seq assay for CLCN4 is not available on ENCORE database.





57 RBPs can affect the gene expression of CLCN4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CLCN4ENSG00000073464.7187.2152096.435500.957004.721803.35540HepG2AATF
CLCN4ENSG00000073464.7219.08570142.101000.624503.431002.76630HepG2ACO1
CLCN4ENSG00000073464.7353.88230194.097200.866405.014504.32450HepG2AKAP1
CLCN4ENSG00000073464.7325.48180160.613001.018907.298306.05450HepG2ASCC1
CLCN4ENSG00000073464.7398.91540294.418900.438101.901001.31230HepG2AUH
CLCN4ENSG00000073464.7262.29710152.588900.781504.212503.26990HepG2CIRBP
CLCN4ENSG00000073464.7297.83080126.193801.238807.200805.97020HepG2CNOT7
CLCN4ENSG00000073464.7106.28550179.05810-0.752503.140702.41350HepG2CPSF6
CLCN4ENSG00000073464.7285.97420174.318700.714104.773503.97180HepG2CELF1
CLCN4ENSG00000073464.7359.63120185.960300.951406.708005.77530HepG2DDX3X
CLCN4ENSG00000073464.788.18470133.69520-0.600302.095601.47480HepG2DNAJC21
CLCN4ENSG00000073464.7166.5046097.976200.765002.840401.71860HepG2AGO1
CLCN4ENSG00000073464.7100.18310169.74410-0.760702.256401.67730HepG2EIF4A3
CLCN4ENSG00000073464.7292.20250165.205300.822603.866303.05840HepG2EIF4B
CLCN4ENSG00000073464.7428.93480338.042600.343502.176701.63160HepG2ETF1
CLCN4ENSG00000073464.7392.68120193.290401.022507.134805.95770HepG2FIP1L1
CLCN4ENSG00000073464.7311.19000158.832100.970206.586305.58210HepG2G3BP1
CLCN4ENSG00000073464.7132.33170202.96910-0.617102.255301.67390HepG2GPKOW
CLCN4ENSG00000073464.7200.43920116.810900.778903.087401.90780HepG2GRSF1
CLCN4ENSG00000073464.7170.88050104.167300.714002.733301.34130HepG2HNRNPAB
CLCN4ENSG00000073464.797.59810150.12650-0.621301.980701.38310HepG2HNRNPC
CLCN4ENSG00000073464.7231.98770160.706400.529502.065401.45610HepG2HNRNPK
CLCN4ENSG00000073464.7227.37510149.134600.608403.420902.75390HepG2HNRNPU
CLCN4ENSG00000073464.7448.12730244.257100.875405.911504.68590HepG2LARP4
CLCN4ENSG00000073464.7282.27560172.196800.712903.393102.70100HepG2MATR3
CLCN4ENSG00000073464.7326.74940176.266500.890305.606704.71910HepG2NCBP2
CLCN4ENSG00000073464.769.17650171.75540-1.312006.250905.15300HepG2NSUN2
CLCN4ENSG00000073464.7299.08350157.038900.929306.084105.02460HepG2PABPC4
CLCN4ENSG00000073464.7287.65250166.628800.787605.744904.92080HepG2PCBP1
CLCN4ENSG00000073464.7303.22350137.588501.139907.311305.70070HepG2PCBP2
CLCN4ENSG00000073464.785.30890133.01780-0.640902.363101.67670HepG2PPIL4
CLCN4ENSG00000073464.7327.76270169.542000.950908.012407.18050HepG2PTBP1
CLCN4ENSG00000073464.7336.47200188.349000.837007.708406.82150HepG2PUM1
CLCN4ENSG00000073464.7268.70870144.735200.892506.282705.42200HepG2PUS1
CLCN4ENSG00000073464.7332.61750183.637400.856906.340105.44930HepG2QKI
CLCN4ENSG00000073464.7292.50900132.799101.139105.537604.56020HepG2RAVER1
CLCN4ENSG00000073464.7203.00100282.53890-0.477002.331701.84530HepG2RBM22
CLCN4ENSG00000073464.7156.0089092.562900.753003.052302.41100HepG2RPS19
CLCN4ENSG00000073464.773.68690132.81630-0.850003.601402.88350HepG2SAFB2
CLCN4ENSG00000073464.7153.5279092.934100.724102.735301.80250HepG2SERBP1
CLCN4ENSG00000073464.7223.58290135.281100.724703.208402.16880HepG2SMNDC1
CLCN4ENSG00000073464.7177.57740319.11350-0.845606.986006.29050HepG2SRFBP1
CLCN4ENSG00000073464.7282.50520184.253800.616503.456002.94280HepG2SRSF1
CLCN4ENSG00000073464.7347.22650206.301500.751003.822902.62710HepG2SRSF3
CLCN4ENSG00000073464.7129.00860277.05940-1.102709.986509.12820HepG2SSB
CLCN4ENSG00000073464.7297.75000165.596200.846306.260905.47570HepG2TAF15
CLCN4ENSG00000073464.7307.42600188.814500.703204.048203.19090HepG2TARDBP
CLCN4ENSG00000073464.779.06610144.94590-0.874403.773203.20860HepG2TIAL1
CLCN4ENSG00000073464.7372.94770165.398101.172909.978108.76980HepG2U2AF1
CLCN4ENSG00000073464.7318.78750151.156101.076502.765801.77700HepG2U2AF2
CLCN4ENSG00000073464.7282.78330183.461200.624102.345001.57930HepG2UBE2L3
CLCN4ENSG00000073464.7231.26040136.937600.755903.034502.31060HepG2UPF1
CLCN4ENSG00000073464.786.03130146.30580-0.766102.263101.60190HepG2XRN2
CLCN4ENSG00000073464.7244.80380150.604100.700804.668204.00490HepG2ZNF622
CLCN4ENSG00000073464.746.2799017.091901.437002.829201.84480K562CELF1
CLCN4ENSG00000073464.744.235806.857802.689305.701004.56590K562GPKOW
CLCN4ENSG00000073464.756.7012015.331701.886803.942603.04350K562GRSF1
CLCN4ENSG00000073464.7157.5083034.092302.2078012.9494011.16500K562PCBP3
CLCN4ENSG00000073464.7125.2828026.151502.2601012.7473011.09020K562POLR2G
CLCN4ENSG00000073464.799.506109.074603.4548017.2234015.17210K562SRPK2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CLCN4 is not available on ENCORE database.






No RBPs affect the alternative splcing events of CLCN4 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for CLCN4 is not avaliable on ENCORE database.