CHKB-CPT1B

General Information

Gene Name       : CHKB-CPT1B
Gene ID             : ENSG00000254413.8
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CHKB-CPT1B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CHKB-CPT1BENSG00000254413.83.326.484.90ENCSR000AEF
HepG2CHKB-CPT1BENSG00000254413.82.822.722.77ENCSR985KAT
K562CHKB-CPT1BENSG00000254413.81.662.001.83ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CHKB-CPT1B is not avaliable on ENCORE database.



Proteins bound to RNA
  • CHKB-CPT1B RNA is bound by 22 proteins.  







eCLIP assay for CHKB-CPT1B is not avaliable on ENCORE database.





22 proteins are bound to CHKB-CPT1B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr225100800851008060-3'-UTR,CDS,intron-Distal4.467985.32242HepG2PABPN1
chr225101065451010689-3'-UTR,CDS,intron-Distal3.430963.32039HepG2PPIG
chr225101204051012060-3'-UTR,CDS,intron-Distal,intron-Proximal4.073113.99014HepG2PABPN1
chr225100975551009826-3'-UTR,CDS,intron-Distal,intron-Proximal4.541818.44604HepG2PRPF8
chr225100875651008819-3'-UTR,CDS,intron-Distal,intron-Proximal3.433054.51483HepG2PABPN1
chr225101063851010712-3'-UTR,CDS,intron-Distal,intron-Proximal3.229826.97440HepG2PABPN1
chr225101049251010547-3'-UTR,CDS,intron-Distal,intron-Proximal4.635185.32242HepG2PABPN1
chr225101496851015014-5'-UTR,CDS,intron-Distal,intron-Proximal4.578283.02297K562DDX24
chr225101743651017473-3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.660684.41267HepG2PPIG
chr225101466951014736-5'-UTR,CDS,intron-Distal4.057414.23295HepG2GRWD1
chr225101742751017500-3'-UTR,5'-UTR,intron-Distal,intron-Proximal4.402245.64460HepG2GRWD1
chr225101496751015004-5'-UTR,CDS,intron-Distal,intron-Proximal4.843605.56813HepG2PPIG
chr225101754151017590-3'-UTR,5'-UTR,intron-Distal3.029813.20279HepG2LSM11
chr225101752051017603-3'-UTR,5'-UTR,intron-Distal3.818913.66700HepG2SRSF1
chr225101749751017590-3'-UTR,5'-UTR,intron-Distal3.458915.54641HepG2PPIG
chr225101292551013012-5'-UTR,CDS,intron-Distal,intron-Proximal4.416535.11007HepG2GRWD1
chr225101496551015031-5'-UTR,CDS,intron-Distal,intron-Proximal4.285015.35719HepG2GRWD1
chr225101758851017682-3'-UTR,5'-UTR,CDS,intron-Distal4.058733.90256HepG2PRPF4
chr225101636151016453-5'-UTR,intron-Distal,intron-Proximal3.136394.90700HepG2SF3B4
chr225101742351017495-3'-UTR,5'-UTR,intron-Distal,intron-Proximal5.1256932.72052HepG2PRPF8
chr225101754051017595-3'-UTR,5'-UTR,intron-Distal3.466293.85127HepG2GRWD1
chr225101785451017870-5'-UTR,CDS,intron-Distal,intron-Proximal3.229343.52724HepG2PABPN1
chr225101766151017685-5'-UTR,CDS,intron-Distal,intron-Proximal3.678676.41974HepG2PPIG
chr225101785951017931-5'-UTR,CDS,intron-Distal,intron-Proximal3.335128.23663HepG2BCLAF1
chr225101785951017917-5'-UTR,CDS,intron-Distal,intron-Proximal5.0511215.33327HepG2PPIG
chr225101762051017684-5'-UTR,CDS,intron-Distal3.626127.42587HepG2PABPN1
chr225101785451017923-5'-UTR,CDS,intron-Distal,intron-Proximal3.402357.08459HepG2LSM11
chr225101762551017661-5'-UTR,CDS,intron-Distal3.069035.41373HepG2PPIG
chr225102065351020686-CDS,intron-Distal,intron-Proximal5.246656.41139HepG2EFTUD2
chr225101819651018231-CDS,intron-Distal,intron-Proximal3.105654.61799HepG2BCLAF1
chr225102075951020875-CDS,intron-Distal,intron-Proximal3.9626811.72703HepG2PRPF4
chr225101818951018240-CDS,intron-Distal,intron-Proximal3.031787.22938HepG2PPIG
chr225101153451011679-intron-Distal,intron-Proximal3.904803.41442HepG2HNRNPK
chr225101864151018700-CDS,intron-Distal,intron-Proximal4.094868.02029HepG2GRWD1
chr225102075751020856-CDS,intron-Distal,intron-Proximal3.550884.14410K562AKAP8L
chr225101879651018835-CDS,intron-Distal,intron-Proximal3.925513.80435HepG2LSM11
chr225101985051019916-CDS,intron-Distal3.4619411.30975HepG2PPIG
chr225101899551019079-CDS,intron-Distal,intron-Proximal3.8431815.66093HepG2PPIG
chr225102080651020868-intron-Distal,intron-Proximal3.814506.94346HepG2BUD13
chr225101900751019068-CDS,intron-Distal,intron-Proximal3.319514.00411HepG2LSM11
chr225101840751018478-CDS,intron-Distal,intron-Proximal3.741305.97823HepG2BCLAF1
chr225102015151020177-intron-Distal,intron-Proximal3.453517.85990HepG2PRPF8
chr225102025551020337-CDS,intron-Distal,intron-Proximal3.769517.99229HepG2AQR
chr225102068951020740-CDS,intron-Distal3.329683.99819HepG2SRSF1
chr225102077851020873-CDS,intron-Distal,intron-Proximal4.5181213.29303HepG2EFTUD2
chr225102119251021279-5'-UTR,CDS,intron-Distal,intron-Proximal5.1278515.50651HepG2NCBP2
chr225102080251020850-intron-Distal,intron-Proximal3.167938.33070HepG2PPIG
chr225102026351020367-CDS,intron-Distal,intron-Proximal3.8173816.58119HepG2SF3A3
chr225102061551020686-CDS,intron-Distal,intron-Proximal4.106828.82110K562PRPF8
chr225102120951021242-5'-UTR,CDS,intron-Distal4.322805.18972HepG2GRWD1
chr225101506751015110-intron-Distal,intron-Proximal3.589684.59518HepG2SF3B4
chr225102112251021192-CDS,intron-Distal5.4589511.69255HepG2NCBP2
chr225102006451020179-CDS,intron-Distal,intron-Proximal4.4272319.84933HepG2HNRNPK
chr225102090351020978-intron-Distal,intron-Proximal3.483393.91614K562BUD13
chr225101991651019982-CDS,intron-Distal,intron-Proximal3.5901210.64832HepG2PPIG
chr225101864851018691-CDS,intron-Distal,intron-Proximal4.248653.87582K562ZNF622
chr225101862951018680-CDS,intron-Distal3.9138112.59726HepG2PPIG
chr225102065051020679-CDS,intron-Distal,intron-Proximal4.600738.01338K562AQR
chr225102092451020987-intron-Distal,intron-Proximal3.3324011.83307HepG2BUD13
chr225101999351020064-intron-Distal,intron-Proximal6.7660327.73384HepG2HNRNPK
chr225102063351020650-intron-Distal,intron-Proximal5.616079.41643K562AQR
chr225101996651020070-CDS,intron-Distal,intron-Proximal4.7287912.19365HepG2DDX59
chr225102080351020854-intron-Distal,intron-Proximal3.367413.63043HepG2GRWD1
chr225102025651020307-CDS,intron-Distal,intron-Proximal3.924715.55825HepG2U2AF2
chr225101997351020044-CDS,intron-Distal,intron-Proximal3.359003.98966K562HNRNPK
chr225102064351020683-CDS,intron-Distal,intron-Proximal4.968786.38747HepG2AQR
chr225102063151020697-CDS,intron-Distal,intron-Proximal5.1047279.94424HepG2PRPF8
chr225102054151020590-intron-Distal,intron-Proximal3.662775.80880HepG2GRWD1
chr225101878551018818-CDS,intron-Distal,intron-Proximal3.423718.10600HepG2PPIG
chr225102025151020366-CDS,intron-Distal,intron-Proximal3.2662920.00939HepG2BUD13
chr225102011151020158-intron-Distal,intron-Proximal3.805994.74496HepG2DDX59
chr225101998751020069-intron-Distal,intron-Proximal3.552906.21080HepG2PCBP2
chr225101899751019057-CDS,intron-Distal,intron-Proximal3.665308.81620HepG2BCLAF1
chr225102064651020692-CDS,intron-Distal,intron-Proximal3.471298.81096HepG2PPIG
chr225101636351016399-5'-UTR,intron-Distal,intron-Proximal4.368328.63922HepG2PRPF8
chr225101878451018841-CDS,intron-Distal,intron-Proximal3.303568.61056HepG2GRWD1
chr225101547151015524-intron-Distal,intron-Proximal4.505715.59044HepG2SF3B4
chr225101225551012284-3'-UTR,intron-Distal3.906383.02457HepG2BCLAF1
chr225102075951020886-CDS,intron-Distal,intron-Proximal4.023583.15006K562RBM15
chr225101899451019060-CDS,intron-Distal,intron-Proximal5.1642010.16184HepG2GRWD1
chr225101506351015109-CDS,intron-Distal,intron-Proximal5.606655.75771HepG2SF3A3
chr225102024851020297-CDS,intron-Distal,intron-Proximal4.5376213.58669HepG2PRPF8
chr225102062251020682-CDS,intron-Distal,intron-Proximal4.2436811.94025HepG2BUD13
chr225102028951020376-CDS,intron-Distal,intron-Proximal3.875264.59518HepG2SF3B4
chr225102119351021255-5'-UTR,CDS,intron-Distal,intron-Proximal3.009633.55138K562ZNF622
chr225101873351018765-intron-Distal,intron-Proximal3.049214.94718HepG2PPIG
chr225101981151019863-CDS,intron-Distal,intron-Proximal5.124757.81134HepG2AQR
chr225102014251020178-intron-Distal,intron-Proximal3.039794.20336HepG2AQR
chr225102018151020241-CDS,intron-Distal4.3549613.64823HepG2PPIG
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CHKB-CPT1B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CHKB-CPT1B is not available on ENCORE database.

  • 62 RBPs can affect the levels of CHKB-CPT1B.  








The Knockdown/knockout RNA-Seq assay for CHKB-CPT1B is not available on ENCORE database.





62 RBPs can affect the gene expression of CHKB-CPT1B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CHKB-CPT1BENSG00000254413.472.4459029.911601.276102.790402.25670HepG2AKAP1
CHKB-CPT1BENSG00000254413.463.9178024.744601.369003.254402.40280HepG2ASCC1
CHKB-CPT1BENSG00000254413.4187.74270107.587500.803103.095902.06040HepG2CCAR1
CHKB-CPT1BENSG00000254413.4234.58830108.281601.115206.737605.69930HepG2CPSF6
CHKB-CPT1BENSG00000254413.496.2305045.084801.093803.749302.56010HepG2YBX3
CHKB-CPT1BENSG00000254413.4109.9482028.642901.940506.813205.87430HepG2DDX3X
CHKB-CPT1BENSG00000254413.4119.0865023.652502.3318011.2226010.07630HepG2EIF2S1
CHKB-CPT1BENSG00000254413.492.1674039.596401.218804.019202.74410HepG2EIF3G
CHKB-CPT1BENSG00000254413.4111.1457026.127302.088709.375208.20590HepG2EIF4A3
CHKB-CPT1BENSG00000254413.4128.3849025.460502.3340010.276008.99470HepG2EIF4B
CHKB-CPT1BENSG00000254413.4107.5708059.568100.852602.719301.88800HepG2EIF4G1
CHKB-CPT1BENSG00000254413.4281.07090106.263301.403204.237003.52060HepG2ETF1
CHKB-CPT1BENSG00000254413.4329.92510121.803001.4375010.133608.78530HepG2FIP1L1
CHKB-CPT1BENSG00000254413.4122.3185054.620801.163004.300203.33270HepG2FUBP3
CHKB-CPT1BENSG00000254413.485.7359026.396001.699505.573304.61370HepG2FXR1
CHKB-CPT1BENSG00000254413.4176.6206024.468002.8516021.3323019.56530HepG2G3BP1
CHKB-CPT1BENSG00000254413.454.32890100.83520-0.892202.396701.48040HepG2HDGF
CHKB-CPT1BENSG00000254413.4120.1588044.711201.426103.576402.85430HepG2HNRNPA1
CHKB-CPT1BENSG00000254413.4169.6443084.042201.013205.097303.84770HepG2HNRNPM
CHKB-CPT1BENSG00000254413.4165.8616049.396501.7474011.5832010.41450HepG2HNRNPU
CHKB-CPT1BENSG00000254413.4117.5533024.864702.2410010.705909.47240HepG2IGF2BP2
CHKB-CPT1BENSG00000254413.4100.4197023.360502.103805.010803.70320HepG2IGF2BP3
CHKB-CPT1BENSG00000254413.4138.4506025.021702.468002.583601.61960HepG2KHSRP
CHKB-CPT1BENSG00000254413.4100.4653026.405401.927707.505206.44070HepG2MAGOH
CHKB-CPT1BENSG00000254413.4199.86260119.471500.742202.470101.55830HepG2MTPAP
CHKB-CPT1BENSG00000254413.4184.0783027.168302.7602019.5418017.95760HepG2NCBP2
CHKB-CPT1BENSG00000254413.4131.6166048.836401.430203.351202.21170HepG2PCBP2
CHKB-CPT1BENSG00000254413.4195.62000108.882900.845204.813203.82420HepG2PRPF4
CHKB-CPT1BENSG00000254413.483.5212026.019701.682402.132701.64040HepG2PTBP1
CHKB-CPT1BENSG00000254413.4170.1658057.162701.573709.522208.50740HepG2PUF60
CHKB-CPT1BENSG00000254413.4134.5187060.674501.148505.630304.84640HepG2PUM1
CHKB-CPT1BENSG00000254413.455.82770107.60390-0.946702.340601.76270HepG2PUS1
CHKB-CPT1BENSG00000254413.465.3314028.175901.213202.935302.29500HepG2QKI
CHKB-CPT1BENSG00000254413.414.0507047.11270-1.745503.054802.31610HepG2RAVER1
CHKB-CPT1BENSG00000254413.487.97240141.15280-0.682102.258201.47360HepG2RBM15
CHKB-CPT1BENSG00000254413.4144.3778088.818000.700802.545402.04320HepG2RBM22
CHKB-CPT1BENSG00000254413.489.4766028.955901.627605.654204.92400HepG2NELFE
CHKB-CPT1BENSG00000254413.4104.1278026.971401.948803.608802.91760HepG2RECQL
CHKB-CPT1BENSG00000254413.4170.76940117.195200.543002.096901.49250HepG2RPLP0
CHKB-CPT1BENSG00000254413.4153.2957027.086402.5006016.8872015.61550HepG2SF3B4
CHKB-CPT1BENSG00000254413.493.4767051.313500.865202.430201.82180HepG2SMN1
CHKB-CPT1BENSG00000254413.489.9429048.120800.902202.623401.69250HepG2SMNDC1
CHKB-CPT1BENSG00000254413.461.19780129.00200-1.075803.268602.41720HepG2SNRNP70
CHKB-CPT1BENSG00000254413.4180.44330100.319300.846803.373502.83720HepG2SRFBP1
CHKB-CPT1BENSG00000254413.4198.5644056.432401.814903.153602.49140HepG2SRSF5
CHKB-CPT1BENSG00000254413.4130.6985087.105500.585302.098401.63590HepG2SSB
CHKB-CPT1BENSG00000254413.4107.0873064.185600.738402.257501.68520HepG2SUCLG1
CHKB-CPT1BENSG00000254413.4122.6628047.082201.381302.736802.06270HepG2SUPV3L1
CHKB-CPT1BENSG00000254413.468.1766025.417501.423404.172603.50530HepG2TAF15
CHKB-CPT1BENSG00000254413.4372.00110175.773701.081505.122603.70850HepG2TBRG4
CHKB-CPT1BENSG00000254413.472.9451023.351101.643204.852903.75730HepG2TIA1
CHKB-CPT1BENSG00000254413.4302.5751048.029202.6552026.9464025.68210HepG2TIAL1
CHKB-CPT1BENSG00000254413.4228.9288060.682201.915502.538601.59510HepG2U2AF2
CHKB-CPT1BENSG00000254413.4251.98030132.936600.922506.053705.08660HepG2UPF1
CHKB-CPT1BENSG00000254413.4239.47580136.647500.809305.154903.76690HepG2UTP18
CHKB-CPT1BENSG00000254413.4154.2954046.347801.735006.883605.75450HepG2XRN2
CHKB-CPT1BENSG00000254413.414.9640049.95200-1.739003.660803.02460K562AGGF1
CHKB-CPT1BENSG00000254413.470.7813015.182702.220806.364305.33890K562EIF2S2
CHKB-CPT1BENSG00000254413.487.7120031.821201.462702.501401.69620K562FIP1L1
CHKB-CPT1BENSG00000254413.40.0000020.11190-99999.999993.172701.84190K562HNRNPK
CHKB-CPT1BENSG00000254413.429.2648061.79270-1.078302.172701.38300K562MBNL1
CHKB-CPT1BENSG00000254413.449.6964022.776701.125502.135301.41950K562MTPAP
CHKB-CPT1BENSG00000254413.412.3006043.31240-1.816102.938602.02520K562NAA15
CHKB-CPT1BENSG00000254413.4144.5145029.249602.304609.937108.37020K562PUF60
CHKB-CPT1BENSG00000254413.468.7010031.107701.143002.852701.76800K562PUM1
CHKB-CPT1BENSG00000254413.413.5099051.54330-1.931803.378302.78690K562PUS1
CHKB-CPT1BENSG00000254413.464.4892025.576901.334103.355402.33590K562SRPK2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CHKB-CPT1B is not available on ENCORE database.





15 RBPs can affect the splicing of CHKB-CPT1B :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECHKB-CPT1BENSG00000254413.4chr22-510184025101851151018155510182595101861851018845-0.149000.000010.00034excludedHepG2U2AF1
SECHKB-CPT1BENSG00000254413.4chr22-510122365101235051011948510121445101276351012848-0.548000.000000.00001excludedHepG2U2AF1
SECHKB-CPT1BENSG00000254413.4chr22-510122365101235051011948510121445101276351012848-0.329000.000230.02782excludedHepG2PRPF8
SECHKB-CPT1BENSG00000254413.4chr22-510184025101851151018155510182595101861851018845-0.228000.000210.00369excludedHepG2U2AF2
SECHKB-CPT1BENSG00000254413.4chr22-510122365101235051011948510121445101276351012848-0.374000.006210.06304excludedHepG2U2AF2
SECHKB-CPT1BENSG00000254413.4chr22-510122365101235051011948510121445101276351012848-0.346000.000060.00670excludedHepG2NCBP2
SECHKB-CPT1BENSG00000254413.4chr22-510122365101235051011948510121445101276351012848-0.445000.000000.00008excludedHepG2HNRNPA1
SECHKB-CPT1BENSG00000254413.4chr22-510122365101235051011948510121445101276351012848-0.403000.000000.00106excludedHepG2PCBP2
SECHKB-CPT1BENSG00000254413.4chr22-510122365101235051011948510121445101276351012848-0.455000.001060.02670excludedHepG2SRSF1
SECHKB-CPT1BENSG00000254413.4chr22-510122365101235051011948510121445101276351012848-0.362000.000170.00732excludedHepG2SF3A3
SECHKB-CPT1BENSG00000254413.4chr22-510122365101235051011948510121445101276351012848-0.344000.000040.00518excludedHepG2TIAL1
SECHKB-CPT1BENSG00000254413.4chr22-510122365101235051011948510121445101276351012848-0.439000.000330.02026excludedHepG2PCBP1
SECHKB-CPT1BENSG00000254413.4chr22-510122365101235051011948510121445101276351012848-0.379000.000740.09892excludedK562EIF4G2
SECHKB-CPT1BENSG00000254413.4chr22-510122365101235051011948510121445101276351012848-0.299000.001970.07731excludedHepG2SF3B4
SECHKB-CPT1BENSG00000254413.4chr22-510122365101235051011948510121445101276351012848-0.407000.000120.00678excludedHepG2HNRNPC
A3SSCHKB-CPT1BENSG00000254413.4chr22-5101899351019147510189935101908951019848510199820.162000.006690.03730longerK562AQR
A3SSCHKB-CPT1BENSG00000254413.4chr22-5100980351010031510098035100996851010434510105510.233000.018950.09103longerK562AQR
A3SSCHKB-CPT1BENSG00000254413.4chr22-5101575251015913510157525101589251016203510163630.313000.018470.08907longerK562AQR
A3SSCHKB-CPT1BENSG00000254413.4chr22-5101984851020037510198485101998251020177510213940.448000.000070.00390longerHepG2U2AF1
RICHKB-CPT1BENSG00000254413.4chr22-510186185101884551018618510187005101878651018845-0.406000.000010.00159excludedK562FTO
RICHKB-CPT1BENSG00000254413.4chr22-5101861851018845510186185101870051018786510188450.280000.000490.00877includedK562U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CHKB-CPT1B is not avaliable on ENCORE database.