CHCHD7

General Information

Gene Name       : CHCHD7
Gene ID             : ENSG00000170791.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CHCHD7)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CHCHD7ENSG00000170791.1762.4354.1258.27ENCSR000AEF
HepG2CHCHD7ENSG00000170791.1729.3245.6637.49ENCSR985KAT
K562CHCHD7ENSG00000170791.1735.1034.6434.87ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CHCHD7 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CHCHD7 RNA is bound by 6 proteins.  







eCLIP assay for CHCHD7 is not avaliable on ENCORE database.





6 proteins are bound to CHCHD7 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr85712988857129966+3'-UTR,CDS,intron-Proximal3.183584.59873K562UCHL5
chr85712714057127194+3'-UTR,5'-UTR,CDS,intron-Proximal5.174118.16423HepG2U2AF2
chr85712715657127227+3'-UTR,5'-UTR,CDS,intron-Proximal3.803538.56326K562DDX3X
chr85712907057129095+3'-UTR,CDS,intron-Proximal4.332206.65114HepG2PRPF8
chr85712909557129128+3'-UTR,CDS,intron-Proximal4.293266.04280HepG2PRPF8
chr85712434957124435+5'-UTR,intron-Proximal4.7416010.10576HepG2NCBP2
chr85712436957124441+5'-UTR,intron-Proximal3.741628.08346HepG2PRPF8
chr85712434957124425+5'-UTR,intron-Proximal3.781184.41267HepG2PPIG
chr85712431957124397+5'-UTR,intron-Proximal3.263677.35825K562DDX3X
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CHCHD7 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CHCHD7 is not available on ENCORE database.

  • 44 RBPs can affect the levels of CHCHD7.  








The Knockdown/knockout RNA-Seq assay for CHCHD7 is not available on ENCORE database.





44 RBPs can affect the gene expression of CHCHD7 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CHCHD7ENSG00000170791.13399.53370533.95360-0.418403.615502.93700HepG2ACO1
CHCHD7ENSG00000170791.13674.12550860.29820-0.351801.733201.30200HepG2AKAP1
CHCHD7ENSG00000170791.13734.22170892.65500-0.281902.335601.69550HepG2AUH
CHCHD7ENSG00000170791.13608.30240775.48820-0.350302.174501.63900HepG2BOP1
CHCHD7ENSG00000170791.13494.62950711.95890-0.525403.853903.05460HepG2CPSF6
CHCHD7ENSG00000170791.13404.93070579.11590-0.516203.687502.41330HepG2CPSF7
CHCHD7ENSG00000170791.13586.13090811.06560-0.468604.826004.02060HepG2CELF1
CHCHD7ENSG00000170791.13603.49550493.862900.289102.296701.53140HepG2DDX19B
CHCHD7ENSG00000170791.13532.16120707.83900-0.411602.177401.62300HepG2DDX6
CHCHD7ENSG00000170791.13314.56310438.59960-0.479603.497202.71360HepG2DNAJC21
CHCHD7ENSG00000170791.13486.99180732.24760-0.588403.324902.57480HepG2EIF4B
CHCHD7ENSG00000170791.13710.57780860.36700-0.276002.120801.37170HepG2EIF4G1
CHCHD7ENSG00000170791.13828.398601024.90060-0.307102.648402.05760HepG2ETF1
CHCHD7ENSG00000170791.13470.36620758.74540-0.689805.952604.96320HepG2FXR1
CHCHD7ENSG00000170791.13391.71710537.86120-0.457402.646601.65100HepG2GNB2L1
CHCHD7ENSG00000170791.13617.10230807.11150-0.387302.148301.58050HepG2GPKOW
CHCHD7ENSG00000170791.13525.29040712.58150-0.439902.870902.15860HepG2HNRNPK
CHCHD7ENSG00000170791.13368.05800489.25510-0.410703.123302.48170HepG2HNRNPU
CHCHD7ENSG00000170791.131098.25330682.925500.685304.577003.62130HepG2NSUN2
CHCHD7ENSG00000170791.13583.85330732.70250-0.327602.122001.57840HepG2PCBP1
CHCHD7ENSG00000170791.13514.18540745.60810-0.536104.979004.29010HepG2PTBP1
CHCHD7ENSG00000170791.13665.58730876.27960-0.396804.685803.95630HepG2PUM1
CHCHD7ENSG00000170791.13595.50940807.39290-0.439103.764803.05320HepG2QKI
CHCHD7ENSG00000170791.13306.89550576.07330-0.908505.020304.08500HepG2RAVER1
CHCHD7ENSG00000170791.13614.701501382.36540-1.169203.927401.73290HepG2RBM17
CHCHD7ENSG00000170791.13683.85890856.62450-0.325002.801602.28100HepG2RBM22
CHCHD7ENSG00000170791.13590.90410772.87790-0.387303.151302.49890HepG2RECQL
CHCHD7ENSG00000170791.13532.37660372.856200.513703.292802.26260HepG2SERBP1
CHCHD7ENSG00000170791.13587.837801295.69300-1.140203.588001.88510HepG2SFPQ
CHCHD7ENSG00000170791.131333.66160848.306000.652604.011603.06190HepG2SNRNP70
CHCHD7ENSG00000170791.13448.25450810.19860-0.8540013.2148012.34720HepG2SRSF1
CHCHD7ENSG00000170791.13552.05840815.04310-0.562106.900605.97390HepG2SRSF5
CHCHD7ENSG00000170791.13549.65760659.17490-0.262101.789101.32800HepG2SRSF9
CHCHD7ENSG00000170791.13641.75190926.90770-0.530407.199306.27620HepG2SUCLG1
CHCHD7ENSG00000170791.13657.08910510.842600.363101.942401.32720HepG2XRN2
CHCHD7ENSG00000170791.13753.969701087.61510-0.528604.946003.28860K562ABCF1
CHCHD7ENSG00000170791.13486.76680622.57530-0.355002.794501.82930K562BCLAF1
CHCHD7ENSG00000170791.13811.657301426.04600-0.813105.715404.13110K562CNOT7
CHCHD7ENSG00000170791.13394.66150935.87900-1.245705.069404.01280K562CPSF6
CHCHD7ENSG00000170791.131123.511901526.22870-0.442005.104803.77010K562CELF1
CHCHD7ENSG00000170791.13641.40240952.32740-0.570208.082507.04630K562DDX47
CHCHD7ENSG00000170791.13285.74400453.37730-0.666005.290304.15590K562EIF4A3
CHCHD7ENSG00000170791.13578.03840893.60480-0.628502.033601.34920K562GPKOW
CHCHD7ENSG00000170791.13565.49240724.77790-0.358003.642702.79930K562NSUN2
CHCHD7ENSG00000170791.13829.021101370.00860-0.724704.271102.71070K562PABPC1
CHCHD7ENSG00000170791.131156.46550660.994000.806908.889507.40400K562PCBP3
CHCHD7ENSG00000170791.13844.46850507.025600.735908.265106.90670K562POLR2G
CHCHD7ENSG00000170791.13515.11850690.00440-0.421703.087502.39030K562PTBP1
CHCHD7ENSG00000170791.13482.25540661.44520-0.455803.371602.43900K562RBM22
CHCHD7ENSG00000170791.13320.92720676.47280-1.0758015.3079013.64030K562SRSF1
CHCHD7ENSG00000170791.13295.64440440.89220-0.576603.229902.12730K562SUPV3L1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CHCHD7 is not available on ENCORE database.





25 RBPs can affect the splicing of CHCHD7 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECHCHD7ENSG00000170791.13chr8+5712923857129313571289915712909057129889571300000.100000.000000.00000includedK562SRSF1
SECHCHD7ENSG00000170791.13chr8+571253205712546857124347571243965712715657127226-0.180000.000000.00000excludedK562SRSF1
SECHCHD7ENSG00000170791.13chr8+571253205712546857124357571243965712715657127226-0.253000.000090.00251excludedHepG2U2AF1
SECHCHD7ENSG00000170791.13chr8+571253205712546857124347571243965712715657127181-0.117000.000150.00683excludedK562AKAP8L
SECHCHD7ENSG00000170791.13chr8+5712532057125448571243565712439657127156571272260.238000.000080.04778includedHepG2DHX30
SECHCHD7ENSG00000170791.13chr8+5712532057125448571243565712439657127156571272260.255000.000010.00522includedHepG2ILF3
SECHCHD7ENSG00000170791.13chr8+571253205712546857124347571243965712715657127226-0.202000.000100.00408excludedHepG2HNRNPK
SECHCHD7ENSG00000170791.13chr8+571253205712546857124347571243965712715657127226-0.273000.005450.05678excludedHepG2U2AF2
SECHCHD7ENSG00000170791.13chr8+5712532057125448571243565712439657127156571272260.213000.000060.01879includedHepG2UCHL5
SECHCHD7ENSG00000170791.13chr8+571253205712546857124347571243965712715657127181-0.161000.000000.00002excludedK562PUS1
SECHCHD7ENSG00000170791.13chr8+5712532057125468571243575712439657127156571272260.162000.001770.08597includedHepG2NCBP2
SECHCHD7ENSG00000170791.13chr8+571253205712546857124347571243965712715657127226-0.113000.000170.00525excludedK562U2AF1
SECHCHD7ENSG00000170791.13chr8+571253205712546857124357571243965712715657127226-0.226000.000010.00204excludedHepG2DDX6
SECHCHD7ENSG00000170791.13chr8+5712923857129313571289475712909057129889571299710.091000.000280.07150includedK562PPIL4
SECHCHD7ENSG00000170791.13chr8+5712532057125448571243565712439657127156571272260.251000.000020.01515includedHepG2XPO5
SECHCHD7ENSG00000170791.13chr8+5712923857129313571289915712909057129889571300000.147000.000000.00000includedHepG2SRSF1
SECHCHD7ENSG00000170791.13chr8+571253205712544857124356571243965712715657127226-0.268000.000000.00016excludedHepG2SRSF1
SECHCHD7ENSG00000170791.13chr8+5712532057125468571243575712439657127156571272260.179000.001290.07890includedHepG2IGF2BP3
SECHCHD7ENSG00000170791.13chr8+5712923857129313571289475712909057129889571299710.101000.000000.00040includedHepG2IGF2BP3
SECHCHD7ENSG00000170791.13chr8+5712532057125468571243475712439657127156571272260.115000.002830.08218includedK562TARDBP
SECHCHD7ENSG00000170791.13chr8+5712532057125468571243575712439657127156571272260.139000.000550.02396includedK562HNRNPU
SECHCHD7ENSG00000170791.13chr8+571253205712546857124347571243965712715657127226-0.106000.001320.03382excludedK562RBM15
SECHCHD7ENSG00000170791.13chr8+571253205712546857124347571243965712715657127226-0.120000.000300.01080excludedK562AGGF1
SECHCHD7ENSG00000170791.13chr8+5712532057125468571243575712439657127156571272260.228000.000040.03629includedHepG2YBX3
SECHCHD7ENSG00000170791.13chr8+571253205712546857124347571243965712715657127226-0.085000.002700.09462excludedK562HNRNPK
SECHCHD7ENSG00000170791.13chr8+5712532057125468571243575712439657127156571272260.175000.002140.07574includedHepG2HNRNPU
SECHCHD7ENSG00000170791.13chr8+5712923857129313571289475712909057129889571299710.075000.000480.02149includedHepG2HNRNPC
SECHCHD7ENSG00000170791.13chr8+5712532057125468571243575712439657127156571272260.200000.000130.03775includedHepG2FUS
SECHCHD7ENSG00000170791.13chr8+5712923857129313571289475712909057129889571299710.052000.000000.00002includedK562PTBP1
A3SSCHCHD7ENSG00000170791.13chr8+5712894757129090571289915712909057127156571272260.148000.000560.02374longerK562U2AF2
A3SSCHCHD7ENSG00000170791.13chr8+571289475712909057128991571290905712715657127226-0.065000.006870.03815shorterK562AQR
A3SSCHCHD7ENSG00000170791.13chr8+5712894757129090571289915712909057127156571272260.165000.000190.01242longerK562PUS1
A3SSCHCHD7ENSG00000170791.13chr8+5712894757129090571289915712909057127156571272260.142000.000370.03660longerK562SRSF1
RICHCHD7ENSG00000170791.13chr8+571243475712722657124347571243965712715657127226-0.233000.000160.00190excludedHepG2U2AF2
RICHCHD7ENSG00000170791.13chr8+5712434757127226571243475712439657127156571272260.053000.010690.09021includedHepG2QKI
RICHCHD7ENSG00000170791.13chr8+571243475712722657124347571243965712715657127226-0.069000.008320.06865excludedHepG2U2AF1
RICHCHD7ENSG00000170791.13chr8+5712434757127226571243475712439657127156571272260.084000.000030.00558includedHepG2SSB

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CHCHD7 is not avaliable on ENCORE database.