C5orf42

General Information

Gene Name       : C5orf42
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C5orf42)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C5orf42 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C5orf42 RNA is bound by 2 proteins.  







eCLIP assay for C5orf42 is not avaliable on ENCORE database.





2 proteins are bound to C5orf42 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr53712032837120364-3'-UTR,CDS,intron-Distal,intron-Proximal3.381363.27569HepG2BCLAF1
chr53723982437239894-5'-UTR,CDS,intron-Distal3.545145.15500HepG2BCLAF1
chr53722701637227135-5'-UTR,CDS,intron-Distal5.8018112.56307HepG2BCLAF1
chr53722435437224423-5'-UTR,CDS,intron-Distal,intron-Proximal5.301816.37937HepG2BCLAF1
chr53720541937205491-5'-UTR,CDS,intron-Distal5.178077.95223HepG2BCLAF1
chr53724312737243173-5'-UTR,CDS,intron-Distal3.698864.09885HepG2BCLAF1
chr53723897437239027-5'-UTR,CDS,intron-Distal3.826265.35703HepG2BCLAF1
chr53724581037245873-5'-UTR,CDS,intron-Distal,intron-Proximal3.264125.00751HepG2BCLAF1
chr53724558337245625-5'-UTR,CDS,intron-Distal3.310053.28366HepG2BCLAF1
chr53717946237179484-CDS,intron-Distal,intron-Proximal4.026883.02457HepG2BCLAF1
chr53718759937187645-CDS,intron-Distal4.698864.78529HepG2BCLAF1
chr53717019137170248-CDS,intron-Distal5.023407.05570HepG2BCLAF1
chr53717398637174027-CDS,intron-Distal3.450113.68471HepG2BCLAF1
chr53718496537185049-CDS,intron-Distal5.099417.05570HepG2BCLAF1
chr53720170337201779-CDS,intron-Distal4.102545.65086HepG2BCLAF1
chr53717602537176068-CDS,intron-Distal4.450114.34038HepG2BCLAF1
chr53718025837180284-CDS,intron-Distal,intron-Proximal4.067343.06595HepG2BCLAF1
chr53719881137198865-CDS,intron-Distal3.687844.51739HepG2BCLAF1
chr53718101937181056-CDS,intron-Distal4.526884.70478HepG2BCLAF1
chr53718347537183520-CDS,intron-Distal4.422594.37348HepG2BCLAF1
chr53719597437196016-CDS,intron-Distal3.241304.74886HepG2BCLAF1
chr53721173737211827-intron-Distal3.707865.30446HepG2SUGP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C5orf42 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C5orf42 is not available on ENCORE database.

  • 60 RBPs can affect the levels of C5orf42.  








The Knockdown/knockout RNA-Seq assay for C5orf42 is not available on ENCORE database.





60 RBPs can affect the gene expression of C5orf42 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C5orf42ENSG00000197603.9537.03550385.529200.478103.059901.93800HepG2AATF
C5orf42ENSG00000197603.9932.23000609.073800.614005.044503.81160HepG2ABCF1
C5orf42ENSG00000197603.9777.00230487.277600.6731010.318009.29930HepG2ACO1
C5orf42ENSG00000197603.9877.71650449.638400.964909.378408.46300HepG2AKAP1
C5orf42ENSG00000197603.9350.45480748.68290-1.095109.103308.09570HepG2BOP1
C5orf42ENSG00000197603.9609.52330478.532000.349002.266301.56320HepG2CALR
C5orf42ENSG00000197603.91155.27430766.759300.591304.216302.99950HepG2CCAR1
C5orf42ENSG00000197603.9450.49880687.35580-0.609503.749602.96210HepG2CPSF6
C5orf42ENSG00000197603.9350.96860501.70860-0.515503.343402.12640HepG2CPSF7
C5orf42ENSG00000197603.9279.99320418.70810-0.580603.965402.74430HepG2YBX3
C5orf42ENSG00000197603.9599.69040425.595500.494603.478502.72610HepG2DDX21
C5orf42ENSG00000197603.9642.40960416.279100.625805.735304.42010HepG2DDX24
C5orf42ENSG00000197603.9599.27040430.709300.476402.798302.16920HepG2DDX3X
C5orf42ENSG00000197603.9640.82020466.170400.459004.201603.40110HepG2DKC1
C5orf42ENSG00000197603.9328.42530407.51240-0.311302.010201.43750HepG2DNAJC2
C5orf42ENSG00000197603.9539.42770401.331300.426502.322901.47630HepG2EEF2
C5orf42ENSG00000197603.9561.89850391.743300.520302.827401.70930HepG2AGO1
C5orf42ENSG00000197603.9715.69740527.690400.439603.144101.98350HepG2ESF1
C5orf42ENSG00000197603.9972.09060816.744600.251102.202701.65560HepG2ETF1
C5orf42ENSG00000197603.91123.50470615.043500.869108.716107.44080HepG2FIP1L1
C5orf42ENSG00000197603.9349.27710241.678100.531202.993202.17820HepG2FUBP3
C5orf42ENSG00000197603.9540.70850367.895800.555503.463202.72250HepG2G3BP1
C5orf42ENSG00000197603.9581.93690390.592600.575103.904502.83480HepG2G3BP2
C5orf42ENSG00000197603.9495.36720373.951500.405502.022201.43610HepG2IGF2BP2
C5orf42ENSG00000197603.9824.67320588.937400.485602.757801.51220HepG2KRR1
C5orf42ENSG00000197603.91079.79930809.307500.415902.331101.57340HepG2LARP4
C5orf42ENSG00000197603.9633.39570396.748900.674805.141104.25470HepG2MAGOH
C5orf42ENSG00000197603.9670.49950497.886800.429303.268202.39240HepG2MSI2
C5orf42ENSG00000197603.9637.00580408.357000.641404.605203.79900HepG2NCBP2
C5orf42ENSG00000197603.9230.51470423.49440-0.877502.339901.53620HepG2PABPC1
C5orf42ENSG00000197603.9489.50410338.522100.532003.198902.33670HepG2PRPF8
C5orf42ENSG00000197603.9511.25240355.105100.525704.635003.96700HepG2PTBP1
C5orf42ENSG00000197603.9688.89820490.563700.489805.626004.84280HepG2PUM1
C5orf42ENSG00000197603.9650.30370490.214600.407602.914902.22710HepG2PUM2
C5orf42ENSG00000197603.9719.09660384.560800.9029012.3699011.18770HepG2QKI
C5orf42ENSG00000197603.9832.80190682.646000.286702.014301.55390HepG2RBM22
C5orf42ENSG00000197603.9585.77470349.023800.746907.467406.40430HepG2RBM25
C5orf42ENSG00000197603.9721.44860395.187400.8683012.5159011.52010HepG2NELFE
C5orf42ENSG00000197603.9595.74190368.082300.694607.934006.96900HepG2RECQL
C5orf42ENSG00000197603.9685.23650481.137900.510102.499301.59980HepG2RPS10
C5orf42ENSG00000197603.9526.26620317.010800.731206.703105.79280HepG2RPS19
C5orf42ENSG00000197603.9618.47280479.734000.366402.107001.40330HepG2RPS2
C5orf42ENSG00000197603.9539.18130736.08940-0.449102.531701.85480HepG2SF3B1
C5orf42ENSG00000197603.9536.00740369.687700.535804.707203.96690HepG2SF3B4
C5orf42ENSG00000197603.9785.73610385.883101.0258018.5028017.50680HepG2SRSF1
C5orf42ENSG00000197603.9692.98400456.274900.602804.979604.17890HepG2SRSF5
C5orf42ENSG00000197603.9988.55180669.424800.562308.567907.76290HepG2SSB
C5orf42ENSG00000197603.9999.35060518.925500.9454021.1446019.68110HepG2SUCLG1
C5orf42ENSG00000197603.9623.90250436.803800.514203.014802.31250HepG2SUPV3L1
C5orf42ENSG00000197603.9743.19550346.872301.0992019.0993017.81710HepG2TAF15
C5orf42ENSG00000197603.9459.28840318.701400.527103.930202.94180HepG2TIA1
C5orf42ENSG00000197603.9243.65180449.64080-0.8840010.622709.62520HepG2TRIM56
C5orf42ENSG00000197603.9868.87820526.192800.723507.192706.18690HepG2U2AF1
C5orf42ENSG00000197603.9834.81620672.051500.312802.847902.24380HepG2UTP3
C5orf42ENSG00000197603.9768.83760481.661900.674604.144102.59230HepG2XRCC5
C5orf42ENSG00000197603.9275.95210429.98510-0.639903.576502.76020HepG2XRN2
C5orf42ENSG00000197603.9670.70330515.615700.379303.507402.76520HepG2ZC3H8
C5orf42ENSG00000197603.91.2445019.03530-3.935103.527002.92550K562PUS1
C5orf42ENSG00000197603.91.9217016.26460-3.081302.936802.09940K562SF3A3
C5orf42ENSG00000197603.91.2815017.47300-3.769303.778902.95190K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C5orf42 is not available on ENCORE database.






No RBPs affect the alternative splcing events of C5orf42 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for C5orf42 is not avaliable on ENCORE database.