C1orf52

General Information

Gene Name       : C1orf52
Gene ID             : ENSG00000162642.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C1orf52)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878C1orf52ENSG00000162642.138.0810.309.19ENCSR000AEF
HepG2C1orf52ENSG00000162642.1317.6316.7417.18ENCSR985KAT
K562C1orf52ENSG00000162642.1327.9316.5922.26ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C1orf52 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C1orf52 RNA is bound by 18 proteins.  







eCLIP assay for C1orf52 is not avaliable on ENCORE database.





18 proteins are bound to C1orf52 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr18571831185718419-3'-UTR,CDS,intron-Distal3.443473.39008HepG2AQR
chr18571788485717965-3'-UTR,intron-Distal5.0190315.88499K562PUM2
chr18571830685718374-3'-UTR,CDS,intron-Distal3.910995.57819K562UCHL5
chr18571790785717966-3'-UTR,intron-Distal3.185105.01170K562KHSRP
chr18571830985718373-3'-UTR,CDS,intron-Distal4.337623.89826HepG2BCLAF1
chr18571821785718288-3'-UTR,intron-Distal4.049713.56104K562CPSF6
chr18571788885717953-3'-UTR,intron-Distal4.393964.39710K562CPSF6
chr18571824285718304-3'-UTR,intron-Distal3.185105.39758K562KHSRP
chr18571830085718438-3'-UTR,CDS,intron-Distal3.200714.62757K562SF3B4
chr18572524185725348-5'-UTR,CDS,intron-Distal,intron-Proximal4.726166.12434HepG2NCBP2
chr18572502685725320-5'-UTR,CDS,intron-Distal,intron-Proximal3.276296.11162K562SRSF1
chr18572523785725283-CDS,intron-Distal5.210318.98006K562RBM15
chr18572511785725235-CDS,intron-Distal3.7758812.45717K562ZNF622
chr18572506585725263-CDS,intron-Distal3.3766211.59993K562UCHL5
chr18572502185725171-CDS,intron-Distal3.203675.80517HepG2GRWD1
chr18572523585725276-CDS,intron-Distal4.213116.14226K562ZNF622
chr18572419085724279-CDS,intron-Distal,intron-Proximal4.054109.39582HepG2BCLAF1
chr18572418185724208-CDS,intron-Distal,intron-Proximal3.021563.07246K562AQR
chr18572418085724264-CDS,intron-Distal,intron-Proximal3.061455.43505K562BUD13
chr18572517385725316-CDS,intron-Distal4.217028.67207K562DDX3X
chr18572457185724612-intron-Distal,intron-Proximal4.792564.48002K562AQR
chr18572491085724998-intron-Distal4.278584.58231HepG2HNRNPK
chr18572491085725001-intron-Distal3.328914.21588K562PRPF8
chr18572499285725026-intron-Distal5.2845915.34985K562AQR
chr18572451385724595-intron-Distal,intron-Proximal4.863007.91159K562KHSRP
chr18572494485724994-intron-Distal3.127683.26275K562BUD13
chr18572502685725041-intron-Distal4.764279.46915K562AQR
chr18572481485724965-intron-Distal,intron-Proximal4.357773.34601K562HNRNPK
chr18572480885724878-intron-Distal,intron-Proximal3.392405.66421K562PRPF8
chr18572292285722956-intron-Distal3.082318.86022K562KHSRP
chr18572494985724992-intron-Distal4.639738.52787K562AQR
chr18572295685722993-intron-Distal3.8353810.94226K562KHSRP
chr18572414285724181-intron-Distal,intron-Proximal4.317885.47926K562AQR
chr18572481485724910-intron-Distal,intron-Proximal3.262574.09699HepG2HNRNPK
chr18572410585724180-intron-Distal,intron-Proximal4.920695.28751K562RBM22
chr18572291185722984-intron-Distal3.612538.35580K562TIA1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C1orf52 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C1orf52 is not available on ENCORE database.

  • 49 RBPs can affect the levels of C1orf52.  








The Knockdown/knockout RNA-Seq assay for C1orf52 is not available on ENCORE database.





49 RBPs can affect the gene expression of C1orf52 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C1orf52ENSG00000162642.9161.70370254.01810-0.651602.573601.66480HepG2ABCF1
C1orf52ENSG00000162642.9388.09220273.217800.506203.844703.14960HepG2ACO1
C1orf52ENSG00000162642.9616.96890358.372900.783605.630104.90270HepG2AKAP1
C1orf52ENSG00000162642.9438.65810296.517500.564903.261002.40890HepG2ASCC1
C1orf52ENSG00000162642.9300.88880197.967800.603903.257502.61480HepG2BOP1
C1orf52ENSG00000162642.9422.06060263.475300.679703.204802.37760HepG2CNOT7
C1orf52ENSG00000162642.9215.32440336.76470-0.645205.315104.33340HepG2DAZAP1
C1orf52ENSG00000162642.9509.88150343.281300.570703.459902.76990HepG2DDX3X
C1orf52ENSG00000162642.9455.62970294.915900.627503.642602.94190HepG2DDX6
C1orf52ENSG00000162642.9683.63170433.037000.658608.121507.18510HepG2ETF1
C1orf52ENSG00000162642.9223.67580318.76240-0.511102.724302.13220HepG2PUF60
C1orf52ENSG00000162642.9546.63170361.934500.594705.355804.69420HepG2RBM22
C1orf52ENSG00000162642.9247.07840368.98960-0.578603.979803.35290HepG2NELFE
C1orf52ENSG00000162642.990.71160151.94080-0.744202.832002.21090HepG2RPS19
C1orf52ENSG00000162642.9461.31300275.410700.744103.583802.81350HepG2SF3A3
C1orf52ENSG00000162642.9288.34130194.631700.566902.792302.08260HepG2SF3B1
C1orf52ENSG00000162642.9316.17930218.678900.531802.314301.44680HepG2SMNDC1
C1orf52ENSG00000162642.9374.31080216.559000.789403.841902.91440HepG2SNRNP70
C1orf52ENSG00000162642.9893.14410408.784201.1275024.9404023.82830HepG2SRFBP1
C1orf52ENSG00000162642.9325.15680241.093600.431402.371901.72410HepG2SRSF7
C1orf52ENSG00000162642.9315.86310219.452900.525302.531601.92860HepG2U2AF1
C1orf52ENSG00000162642.9308.68390235.811300.388401.884301.36960HepG2UTP3
C1orf52ENSG00000162642.9432.13470607.67120-0.491803.354801.99130K562ABCF1
C1orf52ENSG00000162642.9604.38280418.602800.529805.075104.34550K562AGGF1
C1orf52ENSG00000162642.9621.97480459.969600.435203.020801.98140K562AKAP8
C1orf52ENSG00000162642.9561.85470435.572400.367202.154201.57490K562AKAP8L
C1orf52ENSG00000162642.92653.35570769.434901.7858037.6265035.66810K562AQR
C1orf52ENSG00000162642.997.50580159.12510-0.706602.786401.72990K562CCAR1
C1orf52ENSG00000162642.9240.75090330.27920-0.456102.310201.58700K562CPSF6
C1orf52ENSG00000162642.9760.77450577.833800.396703.853803.10330K562DDX47
C1orf52ENSG00000162642.9603.15360468.725000.363702.741601.87240K562DKC1
C1orf52ENSG00000162642.9372.62070270.830700.460202.912802.09710K562EIF3G
C1orf52ENSG00000162642.9454.60250324.916800.484403.089502.22410K562EIF4A3
C1orf52ENSG00000162642.9646.27230337.900300.9354013.5736012.33590K562FXR1
C1orf52ENSG00000162642.9503.58150335.111400.587503.867402.37880K562HNRNPK
C1orf52ENSG00000162642.9626.01720462.261200.437402.896502.04990K562KIF1C
C1orf52ENSG00000162642.9466.07100352.579400.402502.447701.65400K562MAGOH
C1orf52ENSG00000162642.9153.29780307.79130-1.005607.513606.03900K562METAP2
C1orf52ENSG00000162642.9526.17150362.973000.535602.705401.83360K562NAA15
C1orf52ENSG00000162642.9481.81440313.738200.618804.530503.27220K562PCBP2
C1orf52ENSG00000162642.9614.71640294.194301.0631011.6337010.08590K562PRPF8
C1orf52ENSG00000162642.9468.49970342.540800.451703.138202.43560K562PTBP1
C1orf52ENSG00000162642.91287.904401013.339900.345803.166302.29510K562PUF60
C1orf52ENSG00000162642.91356.999401077.693400.332403.406402.21610K562PUM1
C1orf52ENSG00000162642.9763.50770431.988700.821508.660207.74810K562PUS1
C1orf52ENSG00000162642.9626.51290420.891000.573805.476404.66670K562RBM15
C1orf52ENSG00000162642.9164.43380236.17870-0.522402.342401.43380K562RCC2
C1orf52ENSG00000162642.9420.55310317.680800.404602.452201.64890K562SF3B4
C1orf52ENSG00000162642.9539.64200335.785900.684406.227905.17680K562SRSF1
C1orf52ENSG00000162642.9413.01040278.159700.570204.133003.12340K562SYNCRIP
C1orf52ENSG00000162642.9186.75140264.50700-0.502202.242701.40380K562TRIM56
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C1orf52 is not available on ENCORE database.





12 RBPs can affect the splicing of C1orf52 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEC1orf52ENSG00000162642.9chr1-857246178572474485724206857244058572504085725316-0.378000.000000.00001excludedHepG2RBM22
SEC1orf52ENSG00000162642.9chr1-857246178572474485724206857244058572504085725316-0.215000.004360.06786excludedHepG2U2AF1
SEC1orf52ENSG00000162642.9chr1-8572461785724744857242068572440585725040857253160.329000.000000.00000includedK562AQR
SEC1orf52ENSG00000162642.9chr1-857246178572474485724206857244058572504085725316-0.472000.000000.00000excludedK562FXR1
SEC1orf52ENSG00000162642.9chr1-857246178572474485724206857244058572504085725316-0.349000.000000.00049excludedHepG2DDX3X
SEC1orf52ENSG00000162642.9chr1-857246178572474485724206857244058572504085725316-0.353000.000010.00089excludedHepG2NCBP2
SEC1orf52ENSG00000162642.9chr1-857246178572474485724206857244058572504085725316-0.179000.000200.04533excludedK562APOBEC3C
SEC1orf52ENSG00000162642.9chr1-857246178572474485724206857244058572504085725316-0.237000.002560.08470excludedHepG2MATR3
SEC1orf52ENSG00000162642.9chr1-857246178572474485724206857244058572504085725316-0.253000.001710.04639excludedHepG2SF3A3
SEC1orf52ENSG00000162642.9chr1-8572465985724744857242068572440585725040857253550.276000.000870.05918includedK562HNRNPUL1
SEC1orf52ENSG00000162642.9chr1-857246178572474485724206857244058572504085725316-0.545000.000000.00012excludedHepG2PCBP1
SEC1orf52ENSG00000162642.9chr1-8572461785724744857242068572440585725040857253160.216000.000180.03374includedK562ZC3H8
A3SSC1orf52ENSG00000162642.9chr1-857242068572443185724206857244058572504085725316-0.196000.000690.07582shorterK562FXR1
A3SSC1orf52ENSG00000162642.9chr1-8572420685724450857242068572440585724617857247440.453000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for C1orf52 is not avaliable on ENCORE database.