C1orf35

General Information

Gene Name : C1orf35
Gene ID : ENSG00000143793.12
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: C1orf35)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	C1orf35	ENSG00000143793.12	0.98	3.74	2.36	ENCSR000AEF
HepG2	C1orf35	ENSG00000143793.12	14.42	5.03	9.72	ENCSR985KAT
K562	C1orf35	ENSG00000143793.12	15.08	8.41	11.75	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for C1orf35 is not avaliable on ENCORE database.

Proteins bound to RNA

C1orf35 RNA is bound by 18 proteins.

eCLIP assay for C1orf35 is not avaliable on ENCORE database.

18 proteins are bound to C1orf35 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	228288619	228288800	-	3'-UTR,intron-Distal	4.43602	4.30926	HepG2	LARP4
chr1	228288706	228288791	-	3'-UTR,intron-Distal	3.98307	4.01763	HepG2	GRWD1
chr1	228290909	228291011	-	5'-UTR,CDS,intron-Distal	4.60565	5.05409	HepG2	NCBP2
chr1	228290913	228290971	-	5'-UTR,CDS,intron-Distal	3.21211	3.56169	K562	RBM15
chr1	228290953	228291024	-	5'-UTR,intron-Distal,intron-Proximal	3.89094	5.61049	K562	NCBP2
chr1	228290933	228290992	-	5'-UTR,intron-Distal	3.20289	3.24636	K562	DDX3X
chr1	228290925	228291004	-	5'-UTR,CDS,intron-Distal	3.73622	5.53307	K562	ZNF622
chr1	228290833	228290886	-	CDS,intron-Distal,intron-Proximal	3.81878	5.57819	K562	UCHL5
chr1	228289162	228289199	-	CDS,intron-Distal,intron-Proximal	4.37958	9.29543	K562	AQR
chr1	228289039	228289163	-	CDS,intron-Distal,intron-Proximal	4.44217	9.27525	K562	ZNF622
chr1	228290719	228290754	-	CDS,intron-Distal,intron-Proximal	3.96758	5.85226	K562	UCHL5
chr1	228290111	228290270	-	CDS,intron-Distal,intron-Proximal	3.68227	13.41312	K562	BUD13
chr1	228290815	228290873	-	CDS,intron-Distal,intron-Proximal	3.64436	6.63359	K562	BUD13
chr1	228289973	228290020	-	CDS,intron-Distal,intron-Proximal	3.62819	6.04280	HepG2	PRPF8
chr1	228290177	228290252	-	CDS,intron-Distal,intron-Proximal	5.84959	14.39302	K562	UCHL5
chr1	228290064	228290144	-	CDS,intron-Distal,intron-Proximal	5.14911	11.65593	HepG2	EFTUD2
chr1	228290732	228290775	-	CDS,intron-Distal,intron-Proximal	3.80504	4.86518	HepG2	BUD13
chr1	228290739	228290800	-	CDS,intron-Distal,intron-Proximal	4.18671	6.08301	HepG2	EFTUD2
chr1	228290731	228290815	-	CDS,intron-Distal,intron-Proximal	3.80943	11.76463	K562	BUD13
chr1	228288914	228288979	-	CDS,intron-Distal,intron-Proximal	4.63210	4.94356	HepG2	PRPF8
chr1	228290741	228290797	-	CDS,intron-Distal,intron-Proximal	3.03194	3.10102	HepG2	SF3B4
chr1	228289035	228289127	-	CDS,intron-Distal,intron-Proximal	5.24369	16.97638	K562	UCHL5
chr1	228289984	228290013	-	CDS,intron-Distal,intron-Proximal	5.93587	12.10660	K562	AQR
chr1	228289044	228289119	-	CDS,intron-Distal,intron-Proximal	3.92071	4.86518	HepG2	BUD13
chr1	228289079	228289233	-	CDS,intron-Distal,intron-Proximal	3.54578	9.83200	HepG2	AQR
chr1	228290178	228290225	-	CDS,intron-Distal,intron-Proximal	3.30532	5.39278	K562	ZNF622
chr1	228290188	228290316	-	CDS,intron-Distal,intron-Proximal	3.99992	9.19628	HepG2	BUD13
chr1	228290385	228290455	-	CDS,intron-Distal,intron-Proximal	3.29104	3.90373	HepG2	AQR
chr1	228290047	228290084	-	CDS,intron-Distal,intron-Proximal	3.38155	5.71803	K562	UCHL5
chr1	228289978	228290013	-	CDS,intron-Distal,intron-Proximal	3.65228	4.57180	HepG2	AQR
chr1	228288934	228288956	-	CDS,intron-Distal,intron-Proximal	3.55206	4.22563	K562	UCHL5
chr1	228290173	228290265	-	CDS,intron-Distal,intron-Proximal	3.65953	5.28199	HepG2	GRWD1
chr1	228289793	228289866	-	CDS,intron-Distal,intron-Proximal	3.20841	5.72645	K562	BUD13
chr1	228288927	228288996	-	CDS,intron-Distal,intron-Proximal	4.22173	5.94114	HepG2	BUD13
chr1	228290727	228290787	-	CDS,intron-Distal,intron-Proximal	4.83787	6.08021	K562	PRPF8
chr1	228290733	228290802	-	CDS,intron-Distal,intron-Proximal	3.86700	6.39986	K562	SF3B4
chr1	228289127	228289172	-	CDS,intron-Distal	3.37833	5.65349	K562	UCHL5
chr1	228288869	228288912	-	CDS,intron-Distal	3.54648	3.64950	HepG2	BUD13
chr1	228290175	228290255	-	CDS,intron-Distal,intron-Proximal	3.61091	8.54450	HepG2	PPIG
chr1	228289820	228289878	-	CDS,intron-Distal,intron-Proximal	3.31401	6.15340	HepG2	AQR
chr1	228289038	228289169	-	CDS,intron-Distal,intron-Proximal	3.12992	6.50992	K562	ZNF800
chr1	228289785	228289825	-	CDS,intron-Distal	3.14458	4.30396	K562	UCHL5
chr1	228289735	228289781	-	intron-Distal,intron-Proximal	6.16105	38.93883	K562	AQR
chr1	228290396	228290424	-	intron-Distal,intron-Proximal	3.76720	4.93376	K562	PRPF8
chr1	228290757	228290827	-	intron-Distal,intron-Proximal	4.39509	4.65580	K562	GTF2F1
chr1	228289969	228289984	-	intron-Distal,intron-Proximal	4.79947	9.56266	K562	AQR
chr1	228290452	228290517	-	intron-Distal,intron-Proximal	3.05873	3.30948	HepG2	PRPF4
chr1	228290270	228290324	-	intron-Distal,intron-Proximal	5.97714	10.20211	HepG2	EFTUD2
chr1	228290459	228290503	-	intron-Distal,intron-Proximal	4.68757	4.65580	K562	GTF2F1
chr1	228289696	228289748	-	intron-Distal,intron-Proximal	3.87287	9.43678	K562	BUD13
chr1	228289866	228289958	-	intron-Distal,intron-Proximal	3.55886	9.07913	K562	BUD13
chr1	228289675	228289744	-	intron-Distal,intron-Proximal	6.22511	13.18568	HepG2	EFTUD2
chr1	228290406	228290504	-	intron-Distal,intron-Proximal	4.46316	3.89786	K562	RBFOX2
chr1	228290410	228290510	-	intron-Distal,intron-Proximal	3.14444	7.76525	HepG2	PRPF8
chr1	228290445	228290509	-	intron-Distal,intron-Proximal	5.81259	7.84667	K562	EFTUD2
chr1	228290460	228290547	-	intron-Distal,intron-Proximal	3.96686	6.08669	HepG2	RBFOX2
chr1	228289878	228289970	-	intron-Distal,intron-Proximal	4.27399	11.50355	HepG2	PRPF8
chr1	228290433	228290519	-	intron-Distal,intron-Proximal	5.36308	20.19318	HepG2	EFTUD2
chr1	228290430	228290509	-	intron-Distal,intron-Proximal	3.90419	8.82110	K562	PRPF8
chr1	228289697	228289735	-	intron-Distal,intron-Proximal	6.48075	18.07825	K562	AQR
chr1	228290094	228290171	-	intron-Distal,intron-Proximal	4.81259	6.49507	K562	EFTUD2
chr1	228289668	228289746	-	intron-Distal,intron-Proximal	6.10656	11.86429	K562	EFTUD2
chr1	228290755	228290833	-	intron-Distal,intron-Proximal	4.08056	3.91671	HepG2	RBFOX2
chr1	228289695	228289763	-	intron-Distal,intron-Proximal	3.23834	6.75365	K562	PRPF8
chr1	228289878	228289944	-	intron-Distal,intron-Proximal	5.16281	7.45424	HepG2	AQR
chr1	228290460	228290516	-	intron-Distal,intron-Proximal	4.58867	4.57154	HepG2	FAM120A
chr1	228289707	228289756	-	intron-Distal,intron-Proximal	5.06920	6.47067	K562	SF3B4
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for C1orf35 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for C1orf35 is not available on ENCORE database.
48 RBPs can affect the levels of C1orf35.

The Knockdown/knockout RNA-Seq assay for C1orf35 is not available on ENCORE database.

48 RBPs can affect the gene expression of C1orf35 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
C1orf35	ENSG00000143793.8	83.25430	147.27820	-0.82290	2.61550	1.94480	HepG2	CPSF6
C1orf35	ENSG00000143793.8	97.61430	167.24850	-0.77680	2.19620	1.32920	HepG2	DDX59
C1orf35	ENSG00000143793.8	33.13770	73.16420	-1.14270	2.92380	1.78130	HepG2	AGO1
C1orf35	ENSG00000143793.8	83.03060	133.94500	-0.68990	2.45380	1.68450	HepG2	EIF4G2
C1orf35	ENSG00000143793.8	230.55180	124.43620	0.88960	4.51810	3.64920	HepG2	FXR1
C1orf35	ENSG00000143793.8	270.17350	124.48020	1.11790	7.20960	6.16550	HepG2	MAGOH
C1orf35	ENSG00000143793.8	225.86640	125.15930	0.85160	3.77170	3.04480	HepG2	MATR3
C1orf35	ENSG00000143793.8	237.66680	128.09320	0.89160	2.74020	2.11080	HepG2	NCBP2
C1orf35	ENSG00000143793.8	175.27330	118.42200	0.56560	2.38120	1.86730	HepG2	PTBP1
C1orf35	ENSG00000143793.8	203.52210	142.32080	0.51590	1.87570	1.31760	HepG2	PUM2
C1orf35	ENSG00000143793.8	330.28700	253.37410	0.38240	1.85880	1.41250	HepG2	RBM22
C1orf35	ENSG00000143793.8	164.10620	93.13920	0.81710	2.80100	1.80340	HepG2	RBM27
C1orf35	ENSG00000143793.8	148.86850	75.63370	0.97680	2.82500	1.75340	HepG2	RCC2
C1orf35	ENSG00000143793.8	246.32750	131.78960	0.90220	5.71200	4.97840	HepG2	NELFE
C1orf35	ENSG00000143793.8	211.72190	122.74900	0.78640	4.25130	3.50910	HepG2	RECQL
C1orf35	ENSG00000143793.8	149.92890	85.88910	0.80360	2.55490	1.78380	HepG2	RPS2
C1orf35	ENSG00000143793.8	153.07800	87.68490	0.80380	2.68680	1.62700	HepG2	RPS5
C1orf35	ENSG00000143793.8	516.22750	209.39610	1.30170	5.35230	4.39720	HepG2	SF3A3
C1orf35	ENSG00000143793.8	212.66440	123.28680	0.78650	4.26120	3.55200	HepG2	SF3B4
C1orf35	ENSG00000143793.8	203.42990	102.69100	0.98610	3.53290	2.38810	HepG2	UPF2
C1orf35	ENSG00000143793.8	209.50930	110.42380	0.92390	3.76070	2.92370	HepG2	XRN2
C1orf35	ENSG00000143793.8	811.39710	391.61300	1.05090	20.48100	19.05220	K562	AGGF1
C1orf35	ENSG00000143793.8	594.95440	430.33930	0.46720	3.52510	2.38130	K562	AKAP8
C1orf35	ENSG00000143793.8	643.83810	407.49500	0.65980	6.26230	5.25150	K562	AKAP8L
C1orf35	ENSG00000143793.8	1585.81700	653.23590	1.27950	14.30210	13.11460	K562	AQR
C1orf35	ENSG00000143793.8	675.62550	427.56770	0.66000	8.01890	6.34260	K562	ATP5C1
C1orf35	ENSG00000143793.8	255.69970	417.51510	-0.70740	2.90510	1.81050	K562	CNOT7
C1orf35	ENSG00000143793.8	800.59080	536.98350	0.57610	7.43830	6.43930	K562	DDX47
C1orf35	ENSG00000143793.8	296.11030	172.94990	0.77570	4.31280	3.15620	K562	EFTUD2
C1orf35	ENSG00000143793.8	218.31130	136.74520	0.67480	3.71910	2.80620	K562	EIF3G
C1orf35	ENSG00000143793.8	75.19230	152.17730	-1.01710	4.33670	2.87560	K562	FKBP4
C1orf35	ENSG00000143793.8	427.16040	320.41930	0.41470	2.65520	2.06040	K562	FXR1
C1orf35	ENSG00000143793.8	27.67630	93.85540	-1.76180	6.54060	5.35200	K562	G3BP2
C1orf35	ENSG00000143793.8	325.21760	201.01330	0.69400	4.74790	3.63990	K562	MAGOH
C1orf35	ENSG00000143793.8	551.04900	413.96290	0.41260	2.58870	1.56140	K562	MAK16
C1orf35	ENSG00000143793.8	294.83480	200.59530	0.55550	3.26160	2.25100	K562	MATR3
C1orf35	ENSG00000143793.8	671.80440	484.44430	0.47160	4.24140	3.07580	K562	MBNL1
C1orf35	ENSG00000143793.8	255.53960	172.52350	0.56670	2.89430	1.42190	K562	NUSAP1
C1orf35	ENSG00000143793.8	259.84560	401.10920	-0.62630	2.55420	1.38100	K562	PABPC1
C1orf35	ENSG00000143793.8	301.00950	178.83980	0.75100	3.99890	2.81820	K562	PCBP2
C1orf35	ENSG00000143793.8	219.59730	371.40640	-0.75810	3.46950	1.43510	K562	PPIL4
C1orf35	ENSG00000143793.8	349.00310	168.30150	1.05210	7.50250	6.26680	K562	PRPF8
C1orf35	ENSG00000143793.8	323.79190	195.30210	0.72930	5.41100	4.50930	K562	PTBP1
C1orf35	ENSG00000143793.8	761.92010	404.09530	0.91480	6.11260	5.34420	K562	PUS1
C1orf35	ENSG00000143793.8	628.34360	393.75310	0.67420	7.44310	6.50160	K562	RBM15
C1orf35	ENSG00000143793.8	314.02830	187.23470	0.74590	5.08750	3.90830	K562	RBM22
C1orf35	ENSG00000143793.8	327.39740	171.39380	0.93360	3.89800	2.92640	K562	RPS19
C1orf35	ENSG00000143793.8	210.04260	372.36170	-0.82600	3.21060	1.49740	K562	RPS3A
C1orf35	ENSG00000143793.8	184.25870	97.66310	0.91570	5.26100	4.05950	K562	SF3B4
C1orf35	ENSG00000143793.8	333.51350	191.46870	0.80050	5.75990	4.74740	K562	SRSF1
C1orf35	ENSG00000143793.8	222.70610	136.33040	0.70790	3.15530	2.01470	K562	SRSF4
C1orf35	ENSG00000143793.8	293.44040	193.76260	0.59870	3.22060	2.45770	K562	TARDBP
C1orf35	ENSG00000143793.8	302.25720	186.91010	0.69330	4.43470	3.36170	K562	TIA1
C1orf35	ENSG00000143793.8	584.70340	735.82430	-0.33170	2.10650	1.36360	K562	ZC3H8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for C1orf35 is not available on ENCORE database.

3 RBPs can affect the splicing of C1orf35 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	C1orf35	ENSG00000143793.8	chr1	-	228289435	228289637			228289039	228289174	228289780	228289866	0.09800	0.00000	0.00000	included	K562	AQR
SE	C1orf35	ENSG00000143793.8	chr1	-	228290599	228290750			228290343	228290389	228290834	228291021	-0.09600	0.00682	0.05996	excluded	K562	AQR
A3SS	C1orf35	ENSG00000143793.8	chr1	-	228289039	228289211			228289039	228289174	228289780	228289866	0.18400	0.00015	0.00127	longer	K562	AQR
A3SS	C1orf35	ENSG00000143793.8	chr1	-	228289780	228289896			228289780	228289866	228290010	228290083	0.24800	0.00000	0.00000	longer	K562	AQR
RI	C1orf35	ENSG00000143793.8	chr1	-	228289780	228290083			228289780	228289866	228290010	228290083	0.07300	0.00765	0.04451	included	K562	PUS1
RI	C1orf35	ENSG00000143793.8	chr1	-	228289780	228290083			228289780	228289866	228290010	228290083	0.11400	0.00087	0.01203	included	HepG2	SF3A3
RI	C1orf35	ENSG00000143793.8	chr1	-	228289780	228290083			228289780	228289866	228290010	228290083	0.34600	0.00000	0.00000	included	K562	AQR
RI	C1orf35	ENSG00000143793.8	chr1	-	228290010	228290261			228290010	228290083	228290178	228290261	0.32200	0.00000	0.00002	included	K562	AQR
MXE	C1orf35	ENSG00000143793.8	chr1	-	228289780	228289866	228290010	228290261	228289113	228289174	228290343	228290389	-0.13200	0.00079	0.00742	2included	K562	AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

C1orf35

General Information

Functions

Localization

Domains (AlphaFold: C1orf35)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for C1orf35 is not avaliable on ENCORE database.

18 proteins are bound to C1orf35 RNA:

eCLIP assay for C1orf35 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for C1orf35 is not available on ENCORE database.

48 RBPs can affect the gene expression of C1orf35 :

The Knockdown/knockout RNA-Seq assay for C1orf35 is not available on ENCORE database.

3 RBPs can affect the splicing of C1orf35 :

The Knockdown/knockout RNA-Seq assay for C1orf35 is not avaliable on ENCORE database.