C17orf85

General Information

Gene Name       : C17orf85
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C17orf85)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C17orf85 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C17orf85 RNA is bound by 20 proteins.  







eCLIP assay for C17orf85 is not avaliable on ENCORE database.





20 proteins are bound to C17orf85 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1737253433725396-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.9368812.14994K562SF3B4
chr1737282763728345-3'-UTR,CDS,intron-Distal,intron-Proximal4.356354.83285K562GRWD1
chr1737176453717681-3'-UTR,CDS,intron-Distal3.698833.14999HepG2GRWD1
chr1737282463728343-3'-UTR,CDS,intron-Distal,intron-Proximal3.7903410.90977K562ZNF622
chr1737273473727402-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.427415.06646HepG2U2AF1
chr1737155863715613-3'-UTR,intron-Distal4.430564.04372HepG2BCLAF1
chr1737282003728256-3'-UTR,CDS,intron-Distal,intron-Proximal4.024574.19412K562EFTUD2
chr1737290603729135-3'-UTR,CDS,intron-Distal,intron-Proximal3.383956.92192K562UCHL5
chr1737153273715413-3'-UTR,intron-Distal,intron-Proximal5.2324442.59069K562PUM2
chr1737290593729099-3'-UTR,CDS,intron-Distal,intron-Proximal3.683364.79276K562ZNF622
chr1737252453725336-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal5.2090315.52964HepG2BCLAF1
chr1737282503728340-3'-UTR,CDS,intron-Distal,intron-Proximal3.283798.31377HepG2GRWD1
chr1737282573728342-3'-UTR,CDS,intron-Distal,intron-Proximal4.6968119.99415HepG2BCLAF1
chr1737282153728257-3'-UTR,CDS,intron-Distal,intron-Proximal4.627859.47159HepG2BCLAF1
chr1737163693716448-3'-UTR,CDS,intron-Distal3.616744.52024HepG2PPIG
chr1737273053727402-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.240733.64063K562U2AF1
chr1737253063725343-3'-UTR,5'-UTR,CDS,intron-Distal3.387914.64775K562SF3B4
chr1737282623728344-3'-UTR,CDS,intron-Distal,intron-Proximal3.591936.54857HepG2PPIG
chr1737282473728342-3'-UTR,CDS,intron-Distal,intron-Proximal4.5571112.34066K562UCHL5
chr1737290613729112-3'-UTR,CDS,intron-Distal5.398139.10017HepG2BCLAF1
chr1737215853721661-5'-UTR,CDS,intron-Distal4.800017.17283HepG2GRWD1
chr1737217243721858-5'-UTR,CDS,intron-Distal3.502347.14024K562SRSF1
chr1737494533749539-5'-UTR,CDS,intron-Distal3.898145.29681HepG2NCBP2
chr1737325363732583-5'-UTR,CDS,intron-Distal,intron-Proximal3.013443.71512HepG2BCLAF1
chr1737433933743445-5'-UTR,CDS,intron-Distal,intron-Proximal3.824315.80935K562ZNF622
chr1737217003721860-5'-UTR,CDS,intron-Distal3.324668.48432K562ZNF622
chr1737326303732661-5'-UTR,CDS,intron-Distal,intron-Proximal4.566135.10960K562ZNF622
chr1737433923743443-5'-UTR,CDS,intron-Distal,intron-Proximal4.178494.96634HepG2PPIG
chr1737325353732577-5'-UTR,CDS,intron-Distal,intron-Proximal4.305543.59941K562UCHL5
chr1737463793746417-5'-UTR,CDS,intron-Distal,intron-Proximal3.496854.40383K562UCHL5
chr1737217563721865-5'-UTR,CDS,intron-Distal3.237914.65204K562TRA2A
chr1737215623721696-5'-UTR,CDS,intron-Distal4.001848.13606K562UCHL5
chr1737493783749453-5'-UTR,CDS,intron-Distal4.244423.45994HepG2NCBP2
chr1737326383732663-5'-UTR,CDS,intron-Distal,intron-Proximal3.698993.32039HepG2PPIG
chr1737434703743499-5'-UTR,CDS,intron-Distal3.314704.06531HepG2GRWD1
chr1737463783746442-5'-UTR,CDS,intron-Distal,intron-Proximal4.015936.70085HepG2PPIG
chr1737433933743431-5'-UTR,CDS,intron-Distal,intron-Proximal4.761624.70478HepG2BCLAF1
chr1737326143732664-5'-UTR,CDS,intron-Distal,intron-Proximal5.241308.40988HepG2BCLAF1
chr1737217553721857-5'-UTR,CDS,intron-Distal4.980558.29145HepG2SRSF1
chr1737434613743500-5'-UTR,CDS,intron-Distal,intron-Proximal4.966165.56813HepG2PPIG
chr1737433963743437-5'-UTR,CDS,intron-Distal4.057414.23295HepG2GRWD1
chr1737217123721851-5'-UTR,CDS,intron-Distal4.770035.29009HepG2TRA2A
chr1737463803746413-5'-UTR,CDS,intron-Distal3.215664.26492HepG2BCLAF1
chr1737434723743499-5'-UTR,CDS,intron-Distal3.624074.17155HepG2BCLAF1
chr1737217053721852-5'-UTR,CDS,intron-Distal5.1976816.10334K562UCHL5
chr1737217333721774-5'-UTR,CDS,intron-Distal3.837625.06180HepG2BCLAF1
chr1737217073721789-5'-UTR,CDS,intron-Distal3.483665.21025HepG2PPIG
chr1737216613721820-5'-UTR,CDS,intron-Distal5.6886914.50055HepG2GRWD1
chr1737463793746405-5'-UTR,CDS,intron-Distal,intron-Proximal3.568955.74979HepG2GRWD1
chr1737245633724648-5'-UTR,CDS,intron-Distal,intron-Proximal3.696135.91739K562UCHL5
chr1737326133732659-5'-UTR,CDS,intron-Distal,intron-Proximal4.158814.04622HepG2GRWD1
chr1737215913721650-5'-UTR,CDS,intron-Distal3.757893.43526K562GRWD1
chr1737245823724647-5'-UTR,CDS,intron-Distal,intron-Proximal4.8193611.47391HepG2BCLAF1
chr1737245613724641-5'-UTR,CDS,intron-Distal4.983769.33883HepG2GRWD1
chr1737325343732582-5'-UTR,CDS,intron-Distal,intron-Proximal3.752895.40651HepG2PPIG
chr1737260603726129-intron-Distal3.481644.97118HepG2U2AF2
chr1737275033727579-intron-Distal3.072934.80355HepG2KHSRP
chr1737280113728034-intron-Distal3.246306.57673K562KHSRP
chr1737388273738893-intron-Distal4.454635.58061HepG2SUGP2
chr1737303063730384-intron-Distal5.069668.17201HepG2PCBP2
chr1737275723727694-intron-Distal3.872236.16207K562TARDBP
chr1737280533728106-intron-Distal3.619494.79415HepG2KHSRP
chr1737261513726221-intron-Distal3.024165.40388HepG2U2AF2
chr1737279793728011-intron-Distal3.427827.84449K562KHSRP
chr1737259893726062-intron-Distal3.556515.14864K562KHSRP
chr1737271673727212-intron-Distal4.477614.20763HepG2U2AF2
chr1737276943727787-intron-Distal4.354415.29390K562TARDBP
chr1737274233727471-intron-Distal,intron-Proximal4.473404.83283HepG2KHSRP
chr1737382713738347-intron-Distal3.273353.00129HepG2SUGP2
chr1737281313728188-intron-Distal,intron-Proximal4.969396.83278K562PRPF8
chr1737279613728027-intron-Distal3.595955.90314HepG2KHSRP
chr1737473913747433-intron-Distal7.4245534.96693HepG2XPO5
chr1737272853727337-intron-Distal,intron-Proximal3.569774.71970HepG2TIAL1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C17orf85 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C17orf85 is not available on ENCORE database.

  • 55 RBPs can affect the levels of C17orf85.  








The Knockdown/knockout RNA-Seq assay for C17orf85 is not available on ENCORE database.





55 RBPs can affect the gene expression of C17orf85 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C17orf85ENSG00000074356.12731.28190951.08360-0.379104.096903.17670HepG2AKAP8L
C17orf85ENSG00000074356.12479.25210629.55510-0.393503.229502.12740HepG2YBX3
C17orf85ENSG00000074356.12758.83650945.04410-0.316602.642702.01250HepG2CELF1
C17orf85ENSG00000074356.12744.82560875.48220-0.233202.077301.34580HepG2DDX19B
C17orf85ENSG00000074356.12447.86490630.45070-0.493304.336602.90800HepG2DDX1
C17orf85ENSG00000074356.12761.83710905.63840-0.249501.964801.37890HepG2DKC1
C17orf85ENSG00000074356.12787.24580620.712500.342801.925001.42040HepG2EIF2S1
C17orf85ENSG00000074356.12924.64610667.829000.469302.524401.86610HepG2EIF4B
C17orf85ENSG00000074356.121891.895101346.817100.490209.245008.25230HepG2ETF1
C17orf85ENSG00000074356.12679.47580434.337300.645506.235705.08250HepG2FUBP3
C17orf85ENSG00000074356.12870.58340691.998200.331101.885701.31000HepG2FXR1
C17orf85ENSG00000074356.12411.84750624.12250-0.599704.874604.04950HepG2HNRNPA1
C17orf85ENSG00000074356.12530.38110694.20910-0.388302.467001.80930HepG2HNRNPC
C17orf85ENSG00000074356.12668.46830925.49910-0.469406.146205.17630HepG2HNRNPL
C17orf85ENSG00000074356.12683.23980919.14050-0.427902.918302.27430HepG2HNRNPLL
C17orf85ENSG00000074356.12819.74660650.405900.333702.536101.62410HepG2HNRNPM
C17orf85ENSG00000074356.12553.16720689.62030-0.318102.620802.03120HepG2HNRNPU
C17orf85ENSG00000074356.12935.28850656.371500.510803.156902.07610HepG2KHSRP
C17orf85ENSG00000074356.121085.65100692.239100.649106.005405.04960HepG2MAGOH
C17orf85ENSG00000074356.12905.20790696.139600.378802.129201.57150HepG2MATR3
C17orf85ENSG00000074356.12756.504801007.50860-0.413403.964203.05110HepG2NOL12
C17orf85ENSG00000074356.12556.23190820.81720-0.561402.677901.80760HepG2PABPC1
C17orf85ENSG00000074356.12526.01880662.80880-0.333502.803602.19400HepG2PCBP1
C17orf85ENSG00000074356.12868.47930674.398400.364803.274802.68920HepG2PTBP1
C17orf85ENSG00000074356.12710.31500961.78710-0.437303.563502.89840HepG2PUF60
C17orf85ENSG00000074356.121242.29210730.463300.7660012.5513011.36270HepG2QKI
C17orf85ENSG00000074356.121011.65090750.569200.430604.591003.92640HepG2NELFE
C17orf85ENSG00000074356.12932.28700699.001400.415404.333403.58500HepG2RECQL
C17orf85ENSG00000074356.12672.080701053.21010-0.648105.066604.13520HepG2SF3A3
C17orf85ENSG00000074356.12909.58180702.197300.373203.552002.89410HepG2SF3B4
C17orf85ENSG00000074356.121560.477101271.428900.295403.741003.18520HepG2SRFBP1
C17orf85ENSG00000074356.121600.08440732.916901.1263035.3962034.12620HepG2SRSF1
C17orf85ENSG00000074356.121112.46450949.669400.228202.101701.54710HepG2SRSF5
C17orf85ENSG00000074356.12658.06290857.19150-0.381403.836003.03630HepG2SRSF7
C17orf85ENSG00000074356.12726.60400596.245300.285202.044101.55530HepG2SRSF9
C17orf85ENSG00000074356.12581.12120784.47550-0.432902.368201.36260HepG2STIP1
C17orf85ENSG00000074356.121182.64620658.704500.8442015.8811014.70170HepG2TAF15
C17orf85ENSG00000074356.12872.95590605.333700.528105.390204.23630HepG2TIA1
C17orf85ENSG00000074356.12951.07770670.139100.505005.434504.78160HepG2TIAL1
C17orf85ENSG00000074356.12556.99740676.08230-0.279502.067601.56690HepG2TRIM56
C17orf85ENSG00000074356.12760.68800934.03650-0.296202.845202.13790HepG2UPF1
C17orf85ENSG00000074356.12500.45920680.91950-0.444202.154001.50780HepG2XRN2
C17orf85ENSG00000074356.12776.70710559.907600.472103.763002.36430K562AARS
C17orf85ENSG00000074356.12969.535201207.52970-0.316702.744501.57450K562CCDC124
C17orf85ENSG00000074356.12660.76540882.30350-0.417102.295501.52230K562FIP1L1
C17orf85ENSG00000074356.12554.31120725.26990-0.387802.616701.84280K562GPKOW
C17orf85ENSG00000074356.12833.867101331.51690-0.675206.632505.45640K562GRSF1
C17orf85ENSG00000074356.12760.55080925.67400-0.283502.575801.79440K562MTPAP
C17orf85ENSG00000074356.12487.35390646.48720-0.407702.247001.56700K562PRPF8
C17orf85ENSG00000074356.12403.39630549.41630-0.445702.619001.74360K562PSIP1
C17orf85ENSG00000074356.121457.240501818.95500-0.319903.041502.03770K562PUM2
C17orf85ENSG00000074356.121343.957901042.735700.366002.618402.08680K562PUS1
C17orf85ENSG00000074356.12386.20310501.18720-0.376002.305601.40540K562RCC2
C17orf85ENSG00000074356.12724.510201014.89460-0.486305.877804.72410K562SF3A3
C17orf85ENSG00000074356.121595.56970760.774201.0684023.6910021.62000K562SRSF1
C17orf85ENSG00000074356.12464.44710602.12250-0.374502.259501.32680K562SRSF4
C17orf85ENSG00000074356.12834.05780676.354100.302302.178701.46640K562U2AF2
C17orf85ENSG00000074356.12896.601201090.50730-0.282502.783102.06220K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C17orf85 is not available on ENCORE database.





6 RBPs can affect the splicing of C17orf85 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEC17orf85ENSG00000074356.12chr17-3727353372738637252463725346372823537283150.504000.000000.00000includedHepG2HNRNPK
SEC17orf85ENSG00000074356.12chr17-374339337434993732536373266237463793746445-0.131000.000010.00035excludedHepG2U2AF2
SEC17orf85ENSG00000074356.12chr17-372454237246463721556372186637252463725346-0.090000.000000.00002excludedK562AQR
SEC17orf85ENSG00000074356.12chr17-372823537283443725110372534637290603729137-0.060000.006780.05969excludedK562AQR
SEC17orf85ENSG00000074356.12chr17-3727353372738637252463725346372823537283150.062000.000060.00710includedHepG2FTO
SEC17orf85ENSG00000074356.12chr17-374339337434993732536373266237463793746445-0.120000.000690.01475excludedK562U2AF2
SEC17orf85ENSG00000074356.12chr17-3727353372738637252463725346372823537283150.183000.000240.05481includedHepG2FUS
A3SSC17orf85ENSG00000074356.12chr17-3724519372469537245193724646372524637253800.095000.000000.00000longerK562AQR
MXEC17orf85ENSG00000074356.12chr17-37325363732662374339337434993729380372950937463793746445-0.238000.002520.043522includedHepG2U2AF1
MXEC17orf85ENSG00000074356.12chr17-372708637271943727353372738637252463725346372823537283440.723000.001300.027151includedHepG2FTO
MXEC17orf85ENSG00000074356.12chr17-374339337434993746379374644537325363732662374933437495400.326000.000000.000001includedHepG2U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for C17orf85 is not avaliable on ENCORE database.