ANKRD54

General Information

Gene Name       : ANKRD54
Gene ID             : ENSG00000100124.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ANKRD54)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ANKRD54ENSG00000100124.146.369.467.91ENCSR000AEF
HepG2ANKRD54ENSG00000100124.1428.6113.2220.91ENCSR985KAT
K562ANKRD54ENSG00000100124.1415.5811.7713.68ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ANKRD54 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ANKRD54 RNA is bound by 7 proteins.  







eCLIP assay for ANKRD54 is not avaliable on ENCORE database.





7 proteins are bound to ANKRD54 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr223822747838227586-3'-UTR,intron-Distal3.893863.34655HepG2AKAP1
chr223822738338227447-3'-UTR,intron-Distal4.163896.14808K562UPF1
chr223822731338227353-3'-UTR,intron-Distal4.595145.24231K562UPF1
chr223822750738227549-3'-UTR,intron-Distal4.600464.90799K562UPF1
chr223822719838227273-3'-UTR,intron-Distal3.671146.84689K562UPF1
chr223822703438227198-3'-UTR,intron-Distal4.7966217.48010K562UPF1
chr223822908738229146-3'-UTR,CDS,intron-Distal,intron-Proximal4.185135.99890HepG2U2AF2
chr223823985538239934-5'-UTR,CDS,intron-Distal,intron-Proximal4.172949.97647HepG2PRPF8
chr223822795238228018-CDS,intron-Distal,intron-Proximal3.334646.54857HepG2PPIG
chr223822874838228800-CDS,intron-Distal,intron-Proximal5.154166.02529K562SF3B4
chr223822976938229808-intron-Distal,intron-Proximal5.621947.23238HepG2SF3A3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ANKRD54 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ANKRD54 is not available on ENCORE database.

  • 61 RBPs can affect the levels of ANKRD54.  








The Knockdown/knockout RNA-Seq assay for ANKRD54 is not available on ENCORE database.





61 RBPs can affect the gene expression of ANKRD54 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ANKRD54ENSG00000100124.8470.18980304.963700.624504.416503.19240HepG2ADAR
ANKRD54ENSG00000100124.8444.09470597.71600-0.428603.756202.97830HepG2AUH
ANKRD54ENSG00000100124.8245.10140345.27030-0.494302.529001.95390HepG2BOP1
ANKRD54ENSG00000100124.8536.78620377.699200.507005.040904.19240HepG2CKAP4
ANKRD54ENSG00000100124.8192.48060316.97670-0.719704.139603.31440HepG2CPSF6
ANKRD54ENSG00000100124.8472.56610349.409700.435503.791702.83440HepG2DDX19B
ANKRD54ENSG00000100124.8453.61490361.458500.327501.955201.37080HepG2DKC1
ANKRD54ENSG00000100124.8235.55420307.08610-0.382601.915901.31900HepG2DNAJC21
ANKRD54ENSG00000100124.8451.47110304.368900.568705.601604.72060HepG2DNAJC2
ANKRD54ENSG00000100124.8510.76190337.883200.596003.597602.55460HepG2EEF2
ANKRD54ENSG00000100124.8609.31490387.052900.654604.893403.99100HepG2FXR1
ANKRD54ENSG00000100124.8506.83610381.179800.410902.152901.37330HepG2G3BP2
ANKRD54ENSG00000100124.8514.17130342.567200.585805.831404.97890HepG2HNRNPU
ANKRD54ENSG00000100124.8577.32660387.188200.576303.823403.05270HepG2MAGOH
ANKRD54ENSG00000100124.8550.04220389.350300.498402.702902.07860HepG2MATR3
ANKRD54ENSG00000100124.8674.17680398.517600.758406.288405.34930HepG2NCBP2
ANKRD54ENSG00000100124.8167.55940267.48010-0.674802.562301.71540HepG2PABPC1
ANKRD54ENSG00000100124.8509.96650385.068300.405203.022202.39210HepG2PCBP1
ANKRD54ENSG00000100124.8609.03440321.667200.920906.169304.66230HepG2PCBP2
ANKRD54ENSG00000100124.8396.67440305.542900.376502.267101.59310HepG2PPIL4
ANKRD54ENSG00000100124.8312.03250425.81490-0.448503.199602.37410HepG2PRPF4
ANKRD54ENSG00000100124.8467.92020288.651700.696804.367303.37610HepG2PRPF8
ANKRD54ENSG00000100124.8576.03200391.813100.555905.181704.48170HepG2PTBP1
ANKRD54ENSG00000100124.8761.70900529.828300.523606.699905.86150HepG2PUM1
ANKRD54ENSG00000100124.8326.51120529.45820-0.697406.784605.75050HepG2PUM2
ANKRD54ENSG00000100124.8670.12980384.824900.8001012.3975011.25360HepG2PUS1
ANKRD54ENSG00000100124.8550.30600436.057200.335602.098401.61370HepG2NELFE
ANKRD54ENSG00000100124.8579.79960406.115500.513604.588303.82180HepG2RECQL
ANKRD54ENSG00000100124.8476.55060266.893400.836307.497906.54590HepG2RPS19
ANKRD54ENSG00000100124.8499.54600362.351500.463102.456701.69920HepG2RPS2
ANKRD54ENSG00000100124.8672.37240448.589900.583803.735902.94810HepG2SF3A3
ANKRD54ENSG00000100124.8507.31730407.942900.314401.853801.35340HepG2SF3B4
ANKRD54ENSG00000100124.8539.89710355.767700.601606.709305.77650HepG2SMN1
ANKRD54ENSG00000100124.8372.44510647.85890-0.7987011.9884011.14070HepG2SRFBP1
ANKRD54ENSG00000100124.8584.37820425.798000.456603.866003.33000HepG2SRSF1
ANKRD54ENSG00000100124.8695.75120562.464300.306702.398501.91380HepG2SSB
ANKRD54ENSG00000100124.8232.03090334.88510-0.529302.625501.41600HepG2STAU1
ANKRD54ENSG00000100124.8360.15710255.730600.493902.309601.31960HepG2STIP1
ANKRD54ENSG00000100124.8692.97520560.468200.306102.189601.62450HepG2SUCLG1
ANKRD54ENSG00000100124.8231.93970372.55900-0.683703.697202.93160HepG2SUPV3L1
ANKRD54ENSG00000100124.8235.83650382.70690-0.698505.667104.91450HepG2TAF15
ANKRD54ENSG00000100124.8636.24300379.019800.747203.120301.98870HepG2TBRG4
ANKRD54ENSG00000100124.8520.50420332.874900.644805.973905.29190HepG2TIAL1
ANKRD54ENSG00000100124.8653.92070487.590900.423302.848401.96160HepG2TUFM
ANKRD54ENSG00000100124.8564.99170428.877500.397602.219101.65030HepG2U2AF1
ANKRD54ENSG00000100124.8541.31000366.744100.561603.145902.37470HepG2XRN2
ANKRD54ENSG00000100124.8851.82390525.661300.6963010.180309.18160K562AGGF1
ANKRD54ENSG00000100124.8779.09810577.599500.431603.263002.17370K562AKAP8
ANKRD54ENSG00000100124.8782.20160546.968800.516002.664102.02250K562AKAP8L
ANKRD54ENSG00000100124.8735.26900513.224800.518604.018903.33730K562AQR
ANKRD54ENSG00000100124.8368.77900266.429300.468902.260901.43630K562EFTUD2
ANKRD54ENSG00000100124.8415.42460306.929600.436602.362901.57950K562FIP1L1
ANKRD54ENSG00000100124.8169.34600267.80470-0.661203.249902.01180K562FKBP4
ANKRD54ENSG00000100124.8113.27140197.28700-0.800503.433702.62940K562G3BP2
ANKRD54ENSG00000100124.8762.72380580.490200.393802.755601.93160K562KIF1C
ANKRD54ENSG00000100124.8771.93210555.656100.474202.795601.71360K562MAK16
ANKRD54ENSG00000100124.8647.11440455.806500.505502.654301.79310K562NAA15
ANKRD54ENSG00000100124.8520.50680424.384600.294402.040301.38820K562NSUN2
ANKRD54ENSG00000100124.8329.63720234.082400.493802.566901.62560K562PCBP2
ANKRD54ENSG00000100124.8502.12950348.418200.527103.493402.55290K562PPIG
ANKRD54ENSG00000100124.8363.41040259.267600.487102.282501.59850K562PRPF8
ANKRD54ENSG00000100124.8947.14810542.483100.803909.399608.44810K562PUS1
ANKRD54ENSG00000100124.8843.37980528.534800.674108.586007.56770K562RBM15
ANKRD54ENSG00000100124.8331.95840236.748800.487502.574101.56740K562SRSF5
ANKRD54ENSG00000100124.8353.75460244.658300.531903.184702.29790K562TIA1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ANKRD54 is not available on ENCORE database.





13 RBPs can affect the splicing of ANKRD54 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSANKRD54ENSG00000100124.8chr22-3822786638228045382278663822802438228643382288090.400000.000000.00000longerK562AQR
RIANKRD54ENSG00000100124.8chr22-3822896438229213382289643822908938229165382292130.141000.000890.04508includedHepG2SFPQ
RIANKRD54ENSG00000100124.8chr22-3822896438229213382289643822908938229165382292130.206000.000020.00032includedHepG2U2AF2
RIANKRD54ENSG00000100124.8chr22-3822896438229213382289643822908938229165382292130.095000.007020.09754includedHepG2IGF2BP3
RIANKRD54ENSG00000100124.8chr22-3822896438229213382289643822908938229165382292130.206000.000010.00040includedHepG2G3BP1
RIANKRD54ENSG00000100124.8chr22-3822896438229213382289643822908938229165382292130.194000.000140.00549includedHepG2KHSRP
RIANKRD54ENSG00000100124.8chr22-3822896438229213382289643822908938229165382292130.190000.005860.04019includedHepG2SF3B4
RIANKRD54ENSG00000100124.8chr22-3822896438229213382289643822908938229165382292130.247000.000000.00001includedHepG2HNRNPK
RIANKRD54ENSG00000100124.8chr22-3822896438229213382289643822908938229165382292130.300000.000000.00053includedHepG2LARP4
MXEANKRD54ENSG00000100124.8chr22-38228964382291163822916538229213382286433822875138229690382297620.240000.000500.020491includedHepG2XRN2
MXEANKRD54ENSG00000100124.8chr22-38228964382291163822916538229213382286433822875138229690382297620.250000.000890.024091includedHepG2DDX55
MXEANKRD54ENSG00000100124.8chr22-38228964382291163822916538229213382286433822875138229690382297620.237000.000270.051641includedK562ZC3H8
MXEANKRD54ENSG00000100124.8chr22-38228964382291163822916538229213382286433822875138229690382297620.257000.000130.008371includedK562SBDS

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ANKRD54 is not avaliable on ENCORE database.