TUBGCP2

General Information

Gene Name : TUBGCP2
Gene ID : ENSG00000130640.13
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TUBGCP2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TUBGCP2	ENSG00000130640.13	10.10	18.11	14.11	ENCSR000AEF
HepG2	TUBGCP2	ENSG00000130640.13	25.29	17.59	21.44	ENCSR985KAT
K562	TUBGCP2	ENSG00000130640.13	25.68	19.08	22.38	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TUBGCP2 is not avaliable on ENCORE database.

Proteins bound to RNA

TUBGCP2 RNA is bound by 16 proteins.

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eCLIP assay for TUBGCP2 is not avaliable on ENCORE database.

16 proteins are bound to TUBGCP2 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr10	135116217	135116299	-	CDS,intron-Distal,intron-Proximal	5.32864	19.12979	K562	AQR
chr10	135098366	135098411	-	intron-Distal	4.84024	12.81213	K562	RBM15
chr10	135096532	135096566	-	intron-Distal,intron-Proximal	5.14582	12.70303	K562	AQR
chr10	135113619	135113648	-	3'-UTR,intron-Distal,intron-Proximal	4.51834	12.35151	K562	AQR
chr10	135116115	135116217	-	intron-Distal,intron-Proximal	6.00992	12.10660	K562	AQR
chr10	135113577	135113619	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.33162	12.08528	K562	AQR
chr10	135101619	135101644	-	CDS,intron-Distal,intron-Proximal	5.71315	11.12141	HepG2	PRPF8
chr10	135100061	135100161	-	intron-Distal	5.05345	11.09550	K562	HNRNPM
chr10	135101556	135101634	-	CDS,intron-Distal,intron-Proximal	6.17206	11.02807	K562	AQR
chr10	135107030	135107057	-	intron-Distal,intron-Proximal	5.81211	11.02807	K562	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 71 entries

eCLIP assay for TUBGCP2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TUBGCP2 is not available on ENCORE database.
55 RBPs can affect the levels of TUBGCP2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TUBGCP2 is not available on ENCORE database.

55 RBPs can affect the gene expression of TUBGCP2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TUBGCP2	ENSG00000130640.9	663.67790	1372.10510	-1.04780	31.08860	29.88280	HepG2	SRFBP1
TUBGCP2	ENSG00000130640.9	783.78980	1720.13440	-1.13400	20.29460	18.87570	K562	AQR
TUBGCP2	ENSG00000130640.9	445.94270	838.83540	-0.91150	15.60480	13.75170	HepG2	HNRNPA2B1
TUBGCP2	ENSG00000130640.9	460.85660	1205.34810	-1.38710	15.34450	13.52100	HepG2	SNRNP70
TUBGCP2	ENSG00000130640.9	500.32770	832.49070	-0.73460	10.12440	9.15950	HepG2	TAF15
TUBGCP2	ENSG00000130640.9	1371.38700	802.72990	0.77250	9.92860	8.67430	HepG2	HNRNPK
TUBGCP2	ENSG00000130640.9	799.51870	516.96380	0.62900	9.47790	8.39720	HepG2	SAFB2
TUBGCP2	ENSG00000130640.9	497.87990	837.67920	-0.75060	9.05230	7.88850	HepG2	RBM25
TUBGCP2	ENSG00000130640.9	881.11710	563.97390	0.64360	8.04620	7.27410	HepG2	TIAL1
TUBGCP2	ENSG00000130640.9	855.40310	580.52310	0.55920	7.73960	6.76350	HepG2	HNRNPU
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 62 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TUBGCP2 is not available on ENCORE database.

3 RBPs can affect the splicing of TUBGCP2 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	TUBGCP2	ENSG00000130640.9	chr10	-	135096581	135096801	135096581	135096725	135097385	135097506	0.05700	0.00001	0.00009	longer	K562	AQR
SE	TUBGCP2	ENSG00000130640.9	chr10	-	135095726	135095846	135094776	135094940	135096581	135096725	-0.09600	0.00012	0.00281	excluded	K562	PUS1
SE	TUBGCP2	ENSG00000130640.9	chr10	-	135095392	135095610	135094776	135094940	135095726	135095846	0.06600	0.00044	0.00850	included	K562	PUS1
A3SS	TUBGCP2	ENSG00000130640.9	chr10	-	135112930	135113107	135112930	135113098	135113488	135113604	-0.10700	0.00162	0.07563	shorter	K562	SF3B4
A3SS	TUBGCP2	ENSG00000130640.9	chr10	-	135106542	135106780	135106542	135106742	135107065	135107273	0.08200	0.00753	0.04136	longer	K562	AQR

Showing 1 to 5 of 5 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TUBGCP2

General Information

Functions

Localization

Domains (AlphaFold: TUBGCP2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TUBGCP2 is not avaliable on ENCORE database.

16 proteins are bound to TUBGCP2 RNA:

eCLIP assay for TUBGCP2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TUBGCP2 is not available on ENCORE database.

55 RBPs can affect the gene expression of TUBGCP2 :

The Knockdown/knockout RNA-Seq assay for TUBGCP2 is not available on ENCORE database.

3 RBPs can affect the splicing of TUBGCP2 :

The Knockdown/knockout RNA-Seq assay for TUBGCP2 is not avaliable on ENCORE database.