TUBGCP2

General Information

Gene Name       : TUBGCP2
Gene ID             : ENSG00000130640.13
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: TUBGCP2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TUBGCP2ENSG00000130640.1310.1018.1114.11ENCSR000AEF
HepG2TUBGCP2ENSG00000130640.1325.2917.5921.44ENCSR985KAT
K562TUBGCP2ENSG00000130640.1325.6819.0822.38ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TUBGCP2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TUBGCP2 RNA is bound by 16 proteins.  







eCLIP assay for TUBGCP2 is not avaliable on ENCORE database.





16 proteins are bound to TUBGCP2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr10135113566135113636-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.048045.96743K562BUD13
chr10135112935135113006-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.660684.41267HepG2PPIG
chr10135113078135113105-3'-UTR,5'-UTR,CDS,intron-Distal3.874363.86978K562YBX3
chr10135111524135111616-3'-UTR,CDS,intron-Distal,intron-Proximal4.752896.21892HepG2PPIG
chr10135096577135096674-3'-UTR,CDS,intron-Distal,intron-Proximal3.225533.28107HepG2PABPN1
chr10135113619135113648-3'-UTR,intron-Distal,intron-Proximal4.5183412.35151K562AQR
chr10135096516135096607-3'-UTR,CDS,intron-Distal,intron-Proximal4.533408.77485HepG2PRPF8
chr10135095723135095847-3'-UTR,CDS,intron-Distal,intron-Proximal4.662774.78834HepG2PABPN1
chr10135113557135113635-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.493243.51594HepG2AQR
chr10135094737135094797-3'-UTR,CDS,intron-Distal,intron-Proximal3.969283.86479HepG2PRPF8
chr10135113577135113619-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.3316212.08528K562AQR
chr10135113029135113078-3'-UTR,5'-UTR,CDS,intron-Distal3.824817.44026K562YBX3
chr10135094822135094890-3'-UTR,CDS,intron-Distal3.225533.28107HepG2PABPN1
chr10135113839135113910-3'-UTR,intron-Distal3.442349.22568K562AQR
chr10135113910135113955-3'-UTR,intron-Distal4.371335.97994K562AQR
chr10135113571135113636-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.428164.21433K562PRPF8
chr10135113453135113531-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.229053.09957HepG2AQR
chr10135116409135116486-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.267385.39602K562DDX3X
chr10135122326135122379-5'-UTR,intron-Distal,intron-Proximal4.255477.57428HepG2DDX3X
chr10135107052135107070-CDS,intron-Distal,intron-Proximal4.572513.37645HepG2PRPF8
chr10135107263135107320-CDS,intron-Distal,intron-Proximal4.303797.43248HepG2SF3A3
chr10135102345135102437-CDS,intron-Distal3.350504.51003HepG2PPIG
chr10135116231135116302-CDS,intron-Distal,intron-Proximal3.955806.34662HepG2PRPF8
chr10135107135135107223-CDS,intron-Distal3.432905.20715K562FXR2
chr10135101619135101644-CDS,intron-Distal,intron-Proximal5.7131511.12141HepG2PRPF8
chr10135098630135098672-CDS,intron-Distal5.156858.28112K562RBM15
chr10135103329135103396-CDS,intron-Distal3.270004.77136HepG2PPIG
chr10135101732135101790-CDS,intron-Distal4.258643.49905HepG2PPIG
chr10135106668135106728-CDS,intron-Distal4.498565.17013K562RBM15
chr10135102446135102509-CDS,intron-Distal4.344554.72838K562UCHL5
chr10135106648135106722-CDS,intron-Distal5.221197.95724HepG2PPIG
chr10135099025135099101-CDS,intron-Distal4.305543.01428K562UCHL5
chr10135098918135098981-CDS,intron-Distal,intron-Proximal4.559625.14565K562UCHL5
chr10135101556135101634-CDS,intron-Distal,intron-Proximal6.1720611.02807K562AQR
chr10135116301135116374-CDS,intron-Distal3.720584.06757K562UCHL5
chr10135103335135103455-CDS,intron-Distal3.068585.76422K562UCHL5
chr10135099111135099168-CDS,intron-Distal,intron-Proximal4.319795.97994K562AQR
chr10135107112135107217-CDS,intron-Distal5.111655.96254K562FMR1
chr10135116217135116299-CDS,intron-Distal,intron-Proximal5.3286419.12979K562AQR
chr10135101588135101619-intron-Distal,intron-Proximal4.250029.68077HepG2PRPF8
chr10135096453135096498-intron-Distal,intron-Proximal3.114673.49168K562AQR
chr10135100880135100920-intron-Distal3.428794.02190K562EXOSC5
chr10135116115135116217-intron-Distal,intron-Proximal6.0099212.10660K562AQR
chr10135096532135096566-intron-Distal,intron-Proximal5.1458212.70303K562AQR
chr10135099744135099796-intron-Distal4.214414.02846K562HNRNPM
chr10135106445135106476-intron-Distal,intron-Proximal4.603314.65563K562AQR
chr10135097651135097702-intron-Distal3.692924.80676K562RBM15
chr10135100078135100160-intron-Distal4.765935.02084HepG2HNRNPM
chr10135097757135097817-intron-Distal4.325376.70275K562RBM15
chr10135100767135100825-intron-Distal5.386099.67630HepG2HNRNPM
chr10135100722135100768-intron-Distal4.790425.04680K562HNRNPM
chr10135100707135100767-intron-Distal3.132613.18845HepG2HNRNPM
chr10135097516135097573-intron-Distal,intron-Proximal4.242455.72349HepG2SF3A3
chr10135106498135106542-intron-Distal,intron-Proximal5.706368.34710K562AQR
chr10135098366135098411-intron-Distal4.8402412.81213K562RBM15
chr10135100768135100820-intron-Distal5.299976.87194K562HNRNPM
chr10135107023135107030-intron-Distal,intron-Proximal5.7785610.48996K562AQR
chr10135100261135100302-intron-Distal4.362443.28572K562HNRNPM
chr10135100757135100812-intron-Distal4.177543.01445K562EXOSC5
chr10135099948135100061-intron-Distal5.815819.74359K562HNRNPM
chr10135101365135101504-intron-Distal4.336974.02846K562HNRNPM
chr10135107024135107052-intron-Distal,intron-Proximal4.757134.35676HepG2PRPF8
chr10135111292135111376-intron-Distal,intron-Proximal4.132783.88726HepG2TIAL1
chr10135099558135099610-intron-Distal4.375503.89080K562EXOSC5
chr10135098541135098569-intron-Distal,intron-Proximal3.126133.92281K562AQR
chr10135100061135100161-intron-Distal5.0534511.09550K562HNRNPM
chr10135097508135097578-intron-Distal,intron-Proximal3.861256.24165HepG2SF3B4
chr10135112883135112931-intron-Distal,intron-Proximal4.9293510.08262K562AQR
chr10135107030135107057-intron-Distal,intron-Proximal5.8121111.02807K562AQR
chr10135096569135096582-intron-Distal,intron-Proximal4.8330210.08262K562AQR
chr10135107057135107065-intron-Distal,intron-Proximal4.7905810.08262K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TUBGCP2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TUBGCP2 is not available on ENCORE database.

  • 55 RBPs can affect the levels of TUBGCP2.  








The Knockdown/knockout RNA-Seq assay for TUBGCP2 is not available on ENCORE database.





55 RBPs can affect the gene expression of TUBGCP2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TUBGCP2ENSG00000130640.91392.21760968.575200.523303.602603.00590HepG2AKAP1
TUBGCP2ENSG00000130640.9360.84210625.76000-0.794203.896802.99410HepG2DDX55
TUBGCP2ENSG00000130640.9995.87710806.212200.304702.841002.15560HepG2DKC1
TUBGCP2ENSG00000130640.9657.40680515.863000.349702.566001.93400HepG2DNAJC2
TUBGCP2ENSG00000130640.91881.543201453.473900.372305.332504.54590HepG2ETF1
TUBGCP2ENSG00000130640.91081.88330854.406200.340502.089501.48520HepG2FXR1
TUBGCP2ENSG00000130640.9657.85870525.353800.324401.926401.37640HepG2HNRNPA1
TUBGCP2ENSG00000130640.9445.94270838.83540-0.9115015.6048013.75170HepG2HNRNPA2B1
TUBGCP2ENSG00000130640.91371.38700802.729900.772509.928608.67430HepG2HNRNPK
TUBGCP2ENSG00000130640.9855.40310580.523100.559207.739606.76350HepG2HNRNPU
TUBGCP2ENSG00000130640.9713.14180905.04830-0.343802.843302.06900HepG2NOL12
TUBGCP2ENSG00000130640.9715.68020574.580900.316702.584101.76210HepG2PARN
TUBGCP2ENSG00000130640.9760.82680517.775000.555106.448905.35830HepG2PPIL4
TUBGCP2ENSG00000130640.91041.59490863.962100.269701.828601.33060HepG2PUF60
TUBGCP2ENSG00000130640.91080.97010917.150600.237002.526401.95420HepG2PUM1
TUBGCP2ENSG00000130640.91152.94200916.470300.331101.928801.36280HepG2PUM2
TUBGCP2ENSG00000130640.9447.17550639.52700-0.516202.120601.49750HepG2RAVER1
TUBGCP2ENSG00000130640.91011.390401214.83300-0.264402.050901.58710HepG2RBM22
TUBGCP2ENSG00000130640.9497.87990837.67920-0.750609.052307.88850HepG2RBM25
TUBGCP2ENSG00000130640.9880.46590577.790500.607605.159504.34970HepG2RPS19
TUBGCP2ENSG00000130640.9587.69720432.753200.441402.039501.35310HepG2RPS3A
TUBGCP2ENSG00000130640.9304.81920477.16350-0.646503.009202.19400HepG2RRP9
TUBGCP2ENSG00000130640.9799.51870516.963800.629009.477908.39720HepG2SAFB2
TUBGCP2ENSG00000130640.9671.572501083.28130-0.689807.820806.68910HepG2SF3B1
TUBGCP2ENSG00000130640.9888.54510602.837300.559606.050605.15720HepG2SMN1
TUBGCP2ENSG00000130640.9882.63920653.351900.433902.382701.49970HepG2SMNDC1
TUBGCP2ENSG00000130640.9460.856601205.34810-1.3871015.3445013.52100HepG2SNRNP70
TUBGCP2ENSG00000130640.9663.677901372.10510-1.0478031.0886029.88280HepG2SRFBP1
TUBGCP2ENSG00000130640.9843.404501165.67540-0.466902.903101.87290HepG2SRSF3
TUBGCP2ENSG00000130640.91027.04990853.056700.267702.546801.94150HepG2SRSF5
TUBGCP2ENSG00000130640.91179.52150970.143400.281803.142902.48850HepG2SUCLG1
TUBGCP2ENSG00000130640.9500.32770832.49070-0.7346010.124409.15950HepG2TAF15
TUBGCP2ENSG00000130640.9831.954301066.86160-0.358802.520301.82350HepG2TARDBP
TUBGCP2ENSG00000130640.9555.68380764.90580-0.461004.134603.12000HepG2TIA1
TUBGCP2ENSG00000130640.9881.11710563.973900.643608.046207.27410HepG2TIAL1
TUBGCP2ENSG00000130640.9768.23880569.136500.432704.776204.07630HepG2TRIM56
TUBGCP2ENSG00000130640.9683.39670905.30280-0.405704.919104.06700HepG2ZC3H8
TUBGCP2ENSG00000130640.92138.514601841.428400.215702.436201.89840K562AGGF1
TUBGCP2ENSG00000130640.9783.789801720.13440-1.1340020.2946018.87570K562AQR
TUBGCP2ENSG00000130640.92333.397302848.63940-0.287803.253902.19800K562CELF1
TUBGCP2ENSG00000130640.9749.29170539.047000.475004.557403.54700K562EIF3G
TUBGCP2ENSG00000130640.9903.656201138.56090-0.333402.506301.72550K562EIF4A3
TUBGCP2ENSG00000130640.9974.077001184.05140-0.281602.630202.03750K562FXR1
TUBGCP2ENSG00000130640.9343.33360575.36220-0.744903.141102.37910K562G3BP2
TUBGCP2ENSG00000130640.91366.151901687.67080-0.304902.711201.96120K562GRSF1
TUBGCP2ENSG00000130640.9866.711501160.77840-0.421503.874703.18350K562HNRNPC
TUBGCP2ENSG00000130640.91206.16460806.248200.581003.307002.15040K562IGF2BP2
TUBGCP2ENSG00000130640.91035.23780819.929000.336302.499001.38020K562IGF2BP3
TUBGCP2ENSG00000130640.91448.376701743.56180-0.267603.203902.33370K562MTPAP
TUBGCP2ENSG00000130640.92006.731802534.01870-0.336603.012101.44850K562NOL12
TUBGCP2ENSG00000130640.91948.290301164.030500.743003.570502.40610K562PABPN1
TUBGCP2ENSG00000130640.9586.66100753.56140-0.361202.379701.47600K562PCBP2
TUBGCP2ENSG00000130640.91746.844302527.49770-0.533006.768505.49140K562PUF60
TUBGCP2ENSG00000130640.92025.835602688.63810-0.408405.688804.11460K562PUM1
TUBGCP2ENSG00000130640.92321.609501851.492900.326304.034903.33510K562RBM15
TUBGCP2ENSG00000130640.91656.348301911.55020-0.206702.061801.35030K562SF3A3
TUBGCP2ENSG00000130640.9636.93280888.08460-0.479603.163102.12150K562SF3B1
TUBGCP2ENSG00000130640.91551.994201958.41780-0.335605.703404.42170K562SRPK2
TUBGCP2ENSG00000130640.91022.86090762.048200.424602.826801.76410K562SRSF5
TUBGCP2ENSG00000130640.91109.40670787.576600.494204.271403.22140K562TIA1
TUBGCP2ENSG00000130640.91023.25710773.037500.404502.654701.58830K562TRA2A
TUBGCP2ENSG00000130640.9386.95130575.52470-0.572702.714101.91800K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TUBGCP2 is not available on ENCORE database.





3 RBPs can affect the splicing of TUBGCP2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETUBGCP2ENSG00000130640.9chr10-1350953921350956101350947761350949401350957261350958460.066000.000440.00850includedK562PUS1
SETUBGCP2ENSG00000130640.9chr10-135095726135095846135094776135094940135096581135096725-0.096000.000120.00281excludedK562PUS1
A3SSTUBGCP2ENSG00000130640.9chr10-135112930135113107135112930135113098135113488135113604-0.107000.001620.07563shorterK562SF3B4
A3SSTUBGCP2ENSG00000130640.9chr10-1351065421351067801351065421351067421351070651351072730.082000.007530.04136longerK562AQR
A3SSTUBGCP2ENSG00000130640.9chr10-1350965811350968011350965811350967251350973851350975060.057000.000010.00009longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TUBGCP2 is not avaliable on ENCORE database.