TNFRSF1B

General Information

Gene Name       : TNFRSF1B
Gene ID             : ENSG00000028137.18
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TNFRSF1B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TNFRSF1BENSG00000028137.189.4622.0315.75ENCSR000AEF
HepG2TNFRSF1BENSG00000028137.180.010.080.04ENCSR985KAT
K562TNFRSF1BENSG00000028137.1834.6527.5231.09ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TNFRSF1B is not avaliable on ENCORE database.



Proteins bound to RNA
  • TNFRSF1B RNA is bound by 20 proteins.  







eCLIP assay for TNFRSF1B is not avaliable on ENCORE database.





20 proteins are bound to TNFRSF1B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr11226814212268267+3'-UTR3.360223.25976K562IGF2BP2
chr11226845812268558+3'-UTR3.654345.95210K562TARDBP
chr11226755712267651+3'-UTR6.8235253.33246K562UPF1
chr11226765112267693+3'-UTR5.1714122.85387K562UPF1
chr11226849312268554+3'-UTR5.8795811.02255K562AKAP1
chr11226749412267541+3'-UTR4.599866.78914K562AKAP1
chr11226749812267515+3'-UTR5.9230354.80520K562UPF1
chr11226743712267494+3'-UTR4.3948721.22205K562AKAP1
chr11226917112269237+3'-UTR5.7864532.22158K562UPF1
chr11226743912267504+3'-UTR3.221845.83563K562METAP2
chr11226751512267557+3'-UTR6.3808660.24982K562UPF1
chr11226848212268570+3'-UTR5.8621750.05402K562UPF1
chr11226863212268679+3'-UTR5.7614323.76045K562UPF1
chr11226918412269260+3'-UTR4.103028.50867K562PABPC4
chr11226875712268807+3'-UTR7.0528533.29576K562UPF1
chr11226916612269263+3'-UTR4.869586.45754K562TARDBP
chr11226744012267498+3'-UTR5.18487400.00000K562UPF1
chr11226873512268817+3'-UTR3.161354.90505K562FAM120A
chr11222709212227123+5'-UTR4.896474.14061K562DROSHA
chr11222708212227135+5'-UTR3.767714.08283K562DDX3X
chr11222713512227227+5'-UTR,CDS,intron-Proximal3.548835.11648K562DDX3X
chr11222716012227231+CDS,intron-Proximal4.177746.59266K562DROSHA
chr11225399012254055+CDS,intron-Proximal5.172065.17615K562AQR
chr11225197812251999+CDS,intron-Proximal5.247596.44303K562AQR
chr11225315212253171+CDS,intron-Proximal5.552628.88118K562AQR
chr11226697612267029+CDS3.182673.34822K562RBM15
chr11224391312243974+intron-Distal5.254327.72823K562PTBP1
chr11225149512251680+intron-Distal5.253196.14086K562GTF2F1
chr11223688512236999+intron-Distal3.830323.14687K562CSTF2T
chr11222752712227576+intron-Distal3.972453.82910K562NONO
chr11223428412234349+intron-Distal3.113654.37916K562MATR3
chr11223429012234351+intron-Distal6.8465323.95693K562PTBP1
chr11225230112252405+intron-Distal,intron-Proximal3.479894.79863K562TARDBP
chr11225318512253311+intron-Distal,intron-Proximal4.384437.94395K562PRPF8
chr11225277112252894+intron-Distal,intron-Proximal5.176877.91457K562RBFOX2
chr11223848512238535+intron-Distal4.184703.57432K562NONO
chr11225154212251662+intron-Distal4.369255.59743K562DROSHA
chr11222816312228194+intron-Distal3.876133.07008K562NONO
chr11223290712232939+intron-Distal3.764933.07008K562NONO
chr11223222012232314+intron-Distal3.333306.10098K562NONO
chr11226348112263676+intron-Distal4.019723.91009K562HNRNPK
chr11223251112232616+intron-Distal5.2540410.50469K562NONO
chr11225849712258580+intron-Distal4.520713.59673K562HNRNPL
chr11225409312254161+intron-Proximal5.323596.83960K562AQR
chr11225317112253204+intron-Proximal6.1122713.72936K562AQR
chr11225199912252024+intron-Proximal5.360597.23718K562AQR
chr11225411912254166+intron-Proximal3.995623.12843K562PRPF8
chr11225320412253254+intron-Proximal5.264276.75320K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TNFRSF1B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TNFRSF1B is not available on ENCORE database.

  • 48 RBPs can affect the levels of TNFRSF1B.  








The Knockdown/knockout RNA-Seq assay for TNFRSF1B is not available on ENCORE database.





48 RBPs can affect the gene expression of TNFRSF1B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TNFRSF1BENSG00000028137.1212.399501.027603.592802.321901.75180HepG2DDX6
TNFRSF1BENSG00000028137.1230.864000.481106.003407.188106.08080HepG2RAVER1
TNFRSF1BENSG00000028137.125.707600.0000099999.999901.801201.33860HepG2SRSF9
TNFRSF1BENSG00000028137.12807.491601120.21320-0.472304.348002.82970K562AARS
TNFRSF1BENSG00000028137.12855.955501171.79350-0.453104.297003.01450K562AKAP8
TNFRSF1BENSG00000028137.121441.865701109.665300.377703.158802.46000K562AKAP8L
TNFRSF1BENSG00000028137.121373.097802267.97180-0.724008.890807.93630K562AQR
TNFRSF1BENSG00000028137.121417.510201164.275800.283802.628701.73970K562ATP5C1
TNFRSF1BENSG00000028137.12767.056801361.84140-0.8282010.925209.14520K562BOP1
TNFRSF1BENSG00000028137.123815.321602981.123300.355804.561303.29870K562CELF1
TNFRSF1BENSG00000028137.121611.756401251.227200.365202.885001.38820K562DDX19B
TNFRSF1BENSG00000028137.12822.177001181.07770-0.522607.986405.74200K562DDX27
TNFRSF1BENSG00000028137.121244.907001961.97660-0.6563015.5547014.12520K562DDX47
TNFRSF1BENSG00000028137.121303.183401005.742700.373702.786601.47240K562DDX6
TNFRSF1BENSG00000028137.12753.460901101.07420-0.547305.209003.35070K562DNAJC21
TNFRSF1BENSG00000028137.12635.839801041.51590-0.711904.428203.12750K562EIF3A
TNFRSF1BENSG00000028137.121209.59520933.223100.374102.904501.71510K562EIF4B
TNFRSF1BENSG00000028137.121914.382202424.37310-0.340704.842903.61740K562EIF4G2
TNFRSF1BENSG00000028137.12497.418601064.05670-1.0970015.1798012.37360K562FKBP4
TNFRSF1BENSG00000028137.12925.326401248.82910-0.432503.337602.32640K562FTO
TNFRSF1BENSG00000028137.12149.22190482.40850-1.6928015.9172013.88650K562G3BP2
TNFRSF1BENSG00000028137.121418.104001690.02530-0.253102.460001.38910K562GLRX3
TNFRSF1BENSG00000028137.121667.289601382.461300.270202.022201.34010K562GPKOW
TNFRSF1BENSG00000028137.122171.917501773.032200.292702.608901.58470K562HNRNPL
TNFRSF1BENSG00000028137.121315.31420902.398500.543502.607801.62160K562IGF2BP2
TNFRSF1BENSG00000028137.12769.400201180.50830-0.617604.466603.24690K562KRR1
TNFRSF1BENSG00000028137.121184.47610947.698200.321602.158901.41170K562MAGOH
TNFRSF1BENSG00000028137.121309.25700945.671100.469203.271902.25940K562MATR3
TNFRSF1BENSG00000028137.121725.328901183.273500.544004.896003.04040K562NONO
TNFRSF1BENSG00000028137.122249.795901721.283300.386203.478002.54120K562PPIG
TNFRSF1BENSG00000028137.121689.59290920.799500.8756016.6174015.05750K562PTBP1
TNFRSF1BENSG00000028137.12699.373201100.59810-0.654206.525005.73190K562PUS1
TNFRSF1BENSG00000028137.12243.81940460.32410-0.916802.843201.40340K562RAVER1
TNFRSF1BENSG00000028137.121454.64300882.561300.720804.205103.14290K562RBM22
TNFRSF1BENSG00000028137.121359.871501002.715800.439504.698603.40420K562RCC2
TNFRSF1BENSG00000028137.12620.232701189.14810-0.939008.628807.17230K562RPS19
TNFRSF1BENSG00000028137.122372.740101947.974400.284503.258502.37630K562SF3A3
TNFRSF1BENSG00000028137.12401.00170624.66320-0.639506.042303.45410K562SND1
TNFRSF1BENSG00000028137.122330.428301995.725100.223602.333001.46470K562SRPK2
TNFRSF1BENSG00000028137.121590.62730902.767600.8171011.203209.79320K562SRSF1
TNFRSF1BENSG00000028137.12798.83120577.447500.468103.746002.49260K562SRSF4
TNFRSF1BENSG00000028137.12694.308301130.08130-0.702806.493504.88820K562SUPV3L1
TNFRSF1BENSG00000028137.12208.93260473.55930-1.180507.365704.44260K562TAF15
TNFRSF1BENSG00000028137.121529.74130913.493500.743707.476606.24860K562TARDBP
TNFRSF1BENSG00000028137.121351.03790881.211300.616408.030206.52440K562TIA1
TNFRSF1BENSG00000028137.12881.024701123.01890-0.350102.648901.72730K562TRIM56
TNFRSF1BENSG00000028137.12845.592301196.30090-0.500503.882202.65660K562UCHL5
TNFRSF1BENSG00000028137.121451.417901791.28480-0.303502.745401.87160K562WDR3
TNFRSF1BENSG00000028137.121465.727601862.61750-0.345705.604104.44210K562WDR43
TNFRSF1BENSG00000028137.122100.518102555.21370-0.282702.171901.41800K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TNFRSF1B is not available on ENCORE database.





3 RBPs can affect the splicing of TNFRSF1B :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETNFRSF1BENSG00000028137.12chr1+1226256312262629122620231226222812266796122692850.130000.000200.00448includedK562PUS1
SETNFRSF1BENSG00000028137.12chr1+1226256312262629122620231226222812266796122692850.099000.003990.07732includedK562RBM15
A5SSTNFRSF1BENSG00000028137.12chr1+1225401112254151122540111225408912254640122546750.060000.006820.09291longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TNFRSF1B is not avaliable on ENCORE database.