TLCD1

General Information

Gene Name       : TLCD1
Gene ID             : ENSG00000160606.10
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: TLCD1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TLCD1ENSG00000160606.104.955.325.13ENCSR000AEF
HepG2TLCD1ENSG00000160606.1015.9216.3516.14ENCSR985KAT
K562TLCD1ENSG00000160606.1024.6825.3625.02ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TLCD1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TLCD1 RNA is bound by 2 proteins.  







eCLIP assay for TLCD1 is not avaliable on ENCORE database.





2 proteins are bound to TLCD1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr172705310627053224-5'-UTR,CDS,intron-Distal6.5666813.93082HepG2DDX3X
chr172705307927053198-5'-UTR,CDS,intron-Distal4.749887.55366K562DDX3X
chr172705228127052372-CDS,intron-Distal,intron-Proximal5.180265.68502HepG2PRPF8
chr172705225327052369-CDS,intron-Distal,intron-Proximal4.1607010.98561K562PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TLCD1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TLCD1 is not available on ENCORE database.

  • 59 RBPs can affect the levels of TLCD1.  








The Knockdown/knockout RNA-Seq assay for TLCD1 is not available on ENCORE database.





59 RBPs can affect the gene expression of TLCD1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TLCD1ENSG00000160606.6207.22810110.386500.908603.773603.16590HepG2AKAP1
TLCD1ENSG00000160606.6136.6570075.505400.855803.030201.94230HepG2AKAP8
TLCD1ENSG00000160606.6172.7030091.333400.919003.930703.00130HepG2ASCC1
TLCD1ENSG00000160606.689.22310163.14800-0.870703.922403.13120HepG2AUH
TLCD1ENSG00000160606.6248.7695083.389301.5768012.7363011.57680HepG2BOP1
TLCD1ENSG00000160606.6150.3008076.553900.973204.038003.22160HepG2CPSF6
TLCD1ENSG00000160606.6174.2369099.163600.813102.867801.83850HepG2DDX5
TLCD1ENSG00000160606.6162.4240095.310900.769003.350602.61520HepG2DKC1
TLCD1ENSG00000160606.6140.9967083.885600.749103.066102.33040HepG2DNAJC21
TLCD1ENSG00000160606.6177.4483087.317201.023004.599303.84550HepG2EIF2S1
TLCD1ENSG00000160606.6210.8024093.957101.165705.409704.47030HepG2EIF4B
TLCD1ENSG00000160606.6117.15530187.31200-0.677003.371902.71790HepG2ETF1
TLCD1ENSG00000160606.638.2676089.03370-1.218203.178702.33970HepG2FUBP3
TLCD1ENSG00000160606.6185.1383090.317301.035405.113904.22130HepG2G3BP1
TLCD1ENSG00000160606.6157.4946086.774000.859903.123802.44840HepG2GPKOW
TLCD1ENSG00000160606.6208.8766084.689301.302307.972506.95930HepG2HNRNPA1
TLCD1ENSG00000160606.677.74920136.57450-0.812803.386802.64770HepG2HNRNPL
TLCD1ENSG00000160606.6212.0137082.810601.356208.211007.18900HepG2HNRNPLL
TLCD1ENSG00000160606.6257.3516091.802501.4870011.2927010.02670HepG2IGF2BP2
TLCD1ENSG00000160606.6162.5174086.164800.915302.193001.32670HepG2IGF2BP3
TLCD1ENSG00000160606.6193.3270097.404900.988904.716603.86680HepG2MAGOH
TLCD1ENSG00000160606.6449.0816097.947502.1968026.3805024.60830HepG2MATR3
TLCD1ENSG00000160606.6164.37710100.252600.713302.511001.90640HepG2NCBP2
TLCD1ENSG00000160606.6155.4981082.455000.915104.449803.71060HepG2PCBP1
TLCD1ENSG00000160606.6154.8544083.897600.884103.986703.35660HepG2PTBP1
TLCD1ENSG00000160606.6170.96580101.471900.752503.154102.50550HepG2PUS1
TLCD1ENSG00000160606.675.0051039.127300.938702.193001.48030HepG2RPS3A
TLCD1ENSG00000160606.6172.2557097.180900.825704.319003.54700HepG2SMN1
TLCD1ENSG00000160606.6165.7851091.199200.862102.753901.97460HepG2SNRNP70
TLCD1ENSG00000160606.673.84080176.82890-1.259907.798707.07570HepG2SRFBP1
TLCD1ENSG00000160606.6207.79200153.531700.436501.894001.44910HepG2SSB
TLCD1ENSG00000160606.6241.7711096.186501.329606.244105.28840HepG2SUPV3L1
TLCD1ENSG00000160606.6129.4494080.729900.681102.087301.44490HepG2TARDBP
TLCD1ENSG00000160606.6164.9784080.457401.035903.271402.11320HepG2TBRG4
TLCD1ENSG00000160606.6137.0190090.918800.591602.046901.60350HepG2TIAL1
TLCD1ENSG00000160606.6201.88260138.678500.541702.282501.49420HepG2TUFM
TLCD1ENSG00000160606.630.00430106.93310-1.833507.759506.71190HepG2U2AF1
TLCD1ENSG00000160606.6177.58880100.080100.827304.493203.63910HepG2UPF1
TLCD1ENSG00000160606.6237.0771096.623101.2948010.740309.68380HepG2UTP3
TLCD1ENSG00000160606.6380.10520240.079700.662804.526902.87560K562APOBEC3C
TLCD1ENSG00000160606.6257.10310154.831500.731502.303101.35110K562CNOT7
TLCD1ENSG00000160606.6317.35490211.052500.588402.495701.87240K562DDX47
TLCD1ENSG00000160606.689.94380156.70130-0.800903.270902.27330K562EFTUD2
TLCD1ENSG00000160606.6154.29380256.63780-0.734104.708603.80200K562EIF2S2
TLCD1ENSG00000160606.670.25310167.77490-1.255906.514204.83130K562EIF3D
TLCD1ENSG00000160606.6148.6531055.882701.411404.566103.81570K562FXR1
TLCD1ENSG00000160606.6652.73580342.000900.9324010.344808.85980K562GRSF1
TLCD1ENSG00000160606.6250.59470173.435700.530902.828301.92490K562HNRNPU
TLCD1ENSG00000160606.6172.7785076.996401.166007.044205.47940K562MATR3
TLCD1ENSG00000160606.6451.22070290.011600.637604.372402.95290K562MSI2
TLCD1ENSG00000160606.640.5876086.09860-1.085002.688401.82020K562NAA15
TLCD1ENSG00000160606.6240.08920148.749300.690602.626001.43150K562PABPC1
TLCD1ENSG00000160606.6277.24040203.239600.447902.159801.45260K562POLR2G
TLCD1ENSG00000160606.6385.29030285.951600.430102.289501.54360K562PPIG
TLCD1ENSG00000160606.678.44440152.48850-0.959003.738702.86650K562PRPF8
TLCD1ENSG00000160606.6215.2474074.971601.5215012.8784011.50170K562PTBP1
TLCD1ENSG00000160606.6451.35610296.860800.604403.950602.98010K562PUF60
TLCD1ENSG00000160606.6425.06590315.745300.428802.685701.63570K562PUM1
TLCD1ENSG00000160606.648.26570102.48840-1.086403.171302.59650K562PUS1
TLCD1ENSG00000160606.6131.5671071.857800.872503.556102.59580K562RBM22
TLCD1ENSG00000160606.6134.6209075.626100.831803.240502.04820K562NELFE
TLCD1ENSG00000160606.623.3268062.09630-1.412502.463401.35660K562SF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TLCD1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of TLCD1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for TLCD1 is not avaliable on ENCORE database.