STX17

General Information

Gene Name       : STX17
Gene ID             : ENSG00000136874.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: STX17)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878STX17ENSG00000136874.1014.2813.9514.11ENCSR000AEF
HepG2STX17ENSG00000136874.106.2713.539.90ENCSR985KAT
K562STX17ENSG00000136874.1012.8014.1513.48ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for STX17 is not avaliable on ENCORE database.



Proteins bound to RNA
  • STX17 RNA is bound by 15 proteins.  







eCLIP assay for STX17 is not avaliable on ENCORE database.





15 proteins are bound to STX17 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr9102731680102731752+3'-UTR4.432968.26051K562PUM2
chr9102677507102677640+3'-UTR,5'-UTR,CDS3.322759.60326HepG2BCLAF1
chr9102730885102730962+3'-UTR,CDS3.485904.20387K562ZNF622
chr9102731406102731483+3'-UTR3.043663.29600K562LIN28B
chr9102722390102722480+3'-UTR,CDS,intron-Proximal4.378393.89565K562PRPF8
chr9102677510102677629+3'-UTR,5'-UTR,CDS3.210687.64415K562ZNF622
chr9102730788102730937+3'-UTR,CDS3.992745.77244K562UCHL5
chr9102732200102732256+3'-UTR3.879563.39858K562IGF2BP2
chr9102729883102729959+3'-UTR,CDS,intron-Proximal5.569208.26501K562SF3B4
chr9102722195102722239+3'-UTR,CDS,intron-Distal,intron-Proximal4.533784.04372HepG2BCLAF1
chr9102713486102713574+3'-UTR,CDS,intron-Proximal3.7470510.92176HepG2BCLAF1
chr9102732059102732107+3'-UTR3.595143.66308K562UPF1
chr9102713443102713581+3'-UTR,CDS,intron-Proximal3.435943.92909K562GRWD1
chr9102731117102731172+3'-UTR4.371413.69433K562UPF1
chr9102731915102731963+3'-UTR3.796625.24353K562UPF1
chr9102731136102731229+3'-UTR3.486223.91115K562LIN28B
chr9102731359102731446+3'-UTR3.612956.37005K562UPF1
chr9102731063102731174+3'-UTR4.185104.58794K562KHSRP
chr9102729924102729978+3'-UTR,CDS,intron-Proximal4.392644.20763HepG2U2AF2
chr9102691060102691114+5'-UTR,CDS3.877104.51739HepG2BCLAF1
chr9102668946102669101+5'-UTR,intron-Distal,intron-Proximal4.083463.45994HepG2NCBP2
chr9102725121102725270+intron-Distal3.034215.73989HepG2HNRNPL
chr9102683605102683833+intron-Distal4.733067.24774K562KHSRP
chr9102724338102724452+intron-Distal4.177363.09122HepG2PTBP1
chr9102728999102729103+intron-Distal4.214913.90026K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for STX17 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for STX17 is not available on ENCORE database.

  • 49 RBPs can affect the levels of STX17.  








The Knockdown/knockout RNA-Seq assay for STX17 is not available on ENCORE database.





49 RBPs can affect the gene expression of STX17 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
STX17ENSG00000136874.6613.40800410.437400.579604.157003.22060HepG2CIRBP
STX17ENSG00000136874.6313.89790436.79720-0.476702.631501.55280HepG2CPSF7
STX17ENSG00000136874.6384.35870472.62610-0.298201.870001.32260HepG2CELF1
STX17ENSG00000136874.6315.51090429.57950-0.445201.980301.45040HepG2DDX6
STX17ENSG00000136874.6273.52530380.22490-0.475203.681102.94840HepG2DNAJC2
STX17ENSG00000136874.6446.98530288.037600.633904.740703.72730HepG2FUBP3
STX17ENSG00000136874.6265.24610430.76990-0.699604.880103.97860HepG2HNRNPC
STX17ENSG00000136874.6354.37130463.00460-0.385802.954302.25970HepG2HNRNPL
STX17ENSG00000136874.6247.20630427.92140-0.791608.615107.58950HepG2HNRNPU
STX17ENSG00000136874.6328.39800437.10650-0.412503.395902.58950HepG2ILF2
STX17ENSG00000136874.6447.20820312.411400.517402.972602.19780HepG2NSUN2
STX17ENSG00000136874.6502.62610395.837000.344502.071601.53380HepG2PCBP1
STX17ENSG00000136874.6377.58750510.66260-0.435604.055103.36680HepG2PUM1
STX17ENSG00000136874.6537.29060395.900900.440502.812102.13240HepG2RBM25
STX17ENSG00000136874.6409.98800541.78510-0.402102.035901.45640HepG2SF3A3
STX17ENSG00000136874.6526.02230348.748200.592804.147303.29980HepG2SF3B1
STX17ENSG00000136874.6334.11910444.39600-0.411502.985002.32030HepG2SMN1
STX17ENSG00000136874.6591.37730437.706600.434003.356102.84830HepG2SRSF1
STX17ENSG00000136874.6668.42450540.191400.307202.289501.71390HepG2SUCLG1
STX17ENSG00000136874.6554.86350393.377400.496103.956503.30490HepG2TAF15
STX17ENSG00000136874.6223.99640343.40690-0.616403.423002.62660HepG2TARDBP
STX17ENSG00000136874.6286.59090419.52420-0.549804.614703.92390HepG2TRIM56
STX17ENSG00000136874.6109.43860213.87950-0.966702.116501.45370HepG2UCHL5
STX17ENSG00000136874.6187.84280356.32570-0.923701.971601.35160HepG2XRN2
STX17ENSG00000136874.6300.03710411.61440-0.456203.444402.70780HepG2ZC3H8
STX17ENSG00000136874.6489.22420809.91560-0.7273010.817209.78800K562AGGF1
STX17ENSG00000136874.6524.11930889.90300-0.763809.490607.37120K562AKAP8
STX17ENSG00000136874.6495.63260842.73620-0.765809.042207.78210K562AKAP8L
STX17ENSG00000136874.6458.75520843.54940-0.8787010.179309.16190K562AQR
STX17ENSG00000136874.6630.98170884.19980-0.486805.569704.22010K562ATP5C1
STX17ENSG00000136874.6772.27870967.95100-0.325802.760801.58830K562CCDC124
STX17ENSG00000136874.6575.32290906.95530-0.656709.737807.88560K562DKC1
STX17ENSG00000136874.6333.55590488.53400-0.550504.064603.07140K562EIF4A3
STX17ENSG00000136874.6557.05340861.35970-0.628805.355904.29910K562GRSF1
STX17ENSG00000136874.6276.65390429.86530-0.635804.418903.68240K562HNRNPC
STX17ENSG00000136874.6508.80610792.47900-0.639306.806705.07450K562HNRNPL
STX17ENSG00000136874.6484.83840670.89590-0.468604.331603.20310K562HNRNPU
STX17ENSG00000136874.6644.49000894.41570-0.472804.219603.17070K562KIF1C
STX17ENSG00000136874.6487.13770677.38180-0.475603.910502.90380K562MAGOH
STX17ENSG00000136874.6557.20460856.12570-0.619605.993504.18810K562MAK16
STX17ENSG00000136874.6652.769801001.96280-0.618207.156805.56440K562MBNL1
STX17ENSG00000136874.6401.68080702.29790-0.806006.051204.55570K562NAA15
STX17ENSG00000136874.6278.57240660.95810-1.246504.898703.47670K562PABPN1
STX17ENSG00000136874.6504.71140656.96480-0.380402.340601.58760K562PPIG
STX17ENSG00000136874.6236.88150385.41500-0.702204.236603.08290K562PSIP1
STX17ENSG00000136874.61072.982301299.95220-0.276802.429701.43440K562PUM1
STX17ENSG00000136874.6510.40280835.88950-0.711707.300606.46550K562PUS1
STX17ENSG00000136874.6475.13750814.34360-0.7773010.932409.77500K562RBM15
STX17ENSG00000136874.6457.38520631.06910-0.464403.383302.44890K562RBM22
STX17ENSG00000136874.6351.62410604.68870-0.782202.531101.40130K562SF1
STX17ENSG00000136874.6458.62830601.93030-0.392302.803901.94260K562SF3B4
STX17ENSG00000136874.6468.95770609.30900-0.377702.370601.41030K562SRSF5
STX17ENSG00000136874.6468.53510652.96140-0.478803.387102.60170K562TARDBP
STX17ENSG00000136874.6318.39510433.26030-0.444402.226201.32050K562UCHL5
STX17ENSG00000136874.6507.64040847.37700-0.739203.869302.25120K562UTP18
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for STX17 is not available on ENCORE database.





6 RBPs can affect the splicing of STX17 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESTX17ENSG00000136874.6chr9+1026844831026845771026774591026776441026910591026911250.106000.000050.00163includedHepG2U2AF1
SESTX17ENSG00000136874.6chr9+1026844831026845771026774591026776441026910591026911250.241000.000000.00014includedHepG2U2AF2
SESTX17ENSG00000136874.6chr9+1026844831026845771026774591026776441026910591026911250.102000.000640.00843includedK562AQR
SESTX17ENSG00000136874.6chr9+102722198102722314102713341102713567102722386102722437-0.106000.003980.07826excludedK562AGGF1
SESTX17ENSG00000136874.6chr9+1026762711026764331026689581026689881026774591026776440.448000.004190.06059includedK562HNRNPC
MXESTX17ENSG00000136874.6chr9+1027221591027223141027223861027224371027133411027135671027299341027300210.082000.015130.088131includedK562AQR
MXESTX17ENSG00000136874.6chr9+1027221981027223141027223861027224371027133411027135671027299341027300210.207000.003180.079821includedHepG2SF3A3

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for STX17 is not avaliable on ENCORE database.