STAG3L2

General Information

Gene Name       : STAG3L2
Gene ID             : ENSG00000277072.4
Essential Gene : No

Functions

Localization

Domains (AlphaFold: STAG3L2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878STAG3L2ENSG00000277072.45.598.977.28ENCSR000AEF
HepG2STAG3L2ENSG00000277072.49.327.378.35ENCSR985KAT
K562STAG3L2ENSG00000277072.428.3722.2525.31ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for STAG3L2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • STAG3L2 RNA is bound by 5 proteins.  







eCLIP assay for STAG3L2 is not avaliable on ENCORE database.





5 proteins are bound to STAG3L2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr77428265874282766-intron-Distal3.529513.70770HepG2DDX59
chr77429666874296705-intron-Distal3.030597.34962HepG2ILF3
chr77428697974287061-intron-Distal4.745826.70232K562ILF3
chr77429538674295502-intron-Distal3.6793315.74299K562ILF3
chr77430381974303900-intron-Distal3.533783.28366HepG2BCLAF1
chr77429830474298355-intron-Distal3.087326.41369HepG2PCBP2
chr77429604274296097-intron-Distal5.093997.72686K562ILF3
chr77429672574296739-intron-Distal3.480944.83813HepG2ILF3
chr77429961374299706-intron-Distal,intron-Proximal6.2293016.66423K562PTBP1
chr77429670574296725-intron-Distal3.336757.40031HepG2ILF3
chr77429962774299710-intron-Distal,intron-Proximal5.018664.74221HepG2PTBP1
chr77429668974296738-intron-Distal4.9486022.11640K562ILF3
chr77429666974296689-intron-Distal5.6350513.27547K562ILF3
chr77429428474294448-intron-Distal3.248053.85034K562ILF3
chr77429612274296178-intron-Distal5.294847.61882HepG2PCBP2
chr77429808574298128-intron-Distal3.736863.06194K562ILF3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for STAG3L2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for STAG3L2 is not available on ENCORE database.

  • 62 RBPs can affect the levels of STAG3L2.  








The Knockdown/knockout RNA-Seq assay for STAG3L2 is not available on ENCORE database.





62 RBPs can affect the gene expression of STAG3L2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
STAG3L2ENSG00000160828.13117.07170189.96250-0.698303.676202.99390HepG2ACO1
STAG3L2ENSG00000160828.13130.69020189.94230-0.539402.480701.84410HepG2CKAP4
STAG3L2ENSG00000160828.13179.82200110.745300.699202.888102.19630HepG2DDX21
STAG3L2ENSG00000160828.1349.32130116.15560-1.235804.441303.66270HepG2DDX3X
STAG3L2ENSG00000160828.13119.8588072.287400.729402.443901.52100HepG2DHX30
STAG3L2ENSG00000160828.13120.5512074.290100.698302.690702.04630HepG2DNAJC2
STAG3L2ENSG00000160828.13200.3536095.922201.062505.498604.67910HepG2EIF2S1
STAG3L2ENSG00000160828.13197.77190106.023600.899404.276603.48600HepG2EIF4A3
STAG3L2ENSG00000160828.13168.20730103.193900.704802.185301.57130HepG2EIF4B
STAG3L2ENSG00000160828.13124.82630185.64600-0.572602.309401.54750HepG2EWSR1
STAG3L2ENSG00000160828.13111.5579054.085901.044403.435802.56300HepG2FUBP3
STAG3L2ENSG00000160828.13175.19050106.918000.712302.700602.01750HepG2FXR1
STAG3L2ENSG00000160828.13259.4532099.211201.3868010.280209.03990HepG2G3BP1
STAG3L2ENSG00000160828.13197.42180105.287400.906804.149803.04970HepG2G3BP2
STAG3L2ENSG00000160828.13148.5999075.665000.973603.867703.12210HepG2HNRNPA1
STAG3L2ENSG00000160828.13168.5596084.165001.001903.442802.67500HepG2HNRNPC
STAG3L2ENSG00000160828.13241.33130100.392401.265308.238207.08300HepG2HNRNPK
STAG3L2ENSG00000160828.13235.57620149.105200.659803.703402.93070HepG2HNRNPL
STAG3L2ENSG00000160828.13149.6758083.608400.840003.918803.20860HepG2HNRNPU
STAG3L2ENSG00000160828.13165.52800100.856400.714702.641001.97930HepG2IGF2BP2
STAG3L2ENSG00000160828.13201.1013094.607701.087803.147802.09530HepG2IGF2BP3
STAG3L2ENSG00000160828.13166.74100101.425000.717102.390401.46910HepG2KHSRP
STAG3L2ENSG00000160828.13233.35950106.955101.125403.182002.47900HepG2MAGOH
STAG3L2ENSG00000160828.13180.97100110.103700.716802.562601.95080HepG2NCBP2
STAG3L2ENSG00000160828.13190.1334087.322401.122506.807606.02450HepG2PTBP1
STAG3L2ENSG00000160828.13206.7013094.562801.128103.559002.86290HepG2QKI
STAG3L2ENSG00000160828.13175.0680085.825401.028305.335004.42750HepG2RBM25
STAG3L2ENSG00000160828.13191.7796097.177800.980705.305404.59540HepG2NELFE
STAG3L2ENSG00000160828.13150.5925090.514600.734302.922402.29060HepG2RECQL
STAG3L2ENSG00000160828.1392.98050184.07100-0.985304.731003.83470HepG2SF3A3
STAG3L2ENSG00000160828.13170.6730090.905900.908704.373103.65560HepG2SF3B4
STAG3L2ENSG00000160828.13147.66170240.78720-0.705504.038603.46700HepG2SRFBP1
STAG3L2ENSG00000160828.13147.6198078.368800.913404.285503.25380HepG2TIA1
STAG3L2ENSG00000160828.13118.25870179.53610-0.602302.855902.30310HepG2ZNF622
STAG3L2ENSG00000160828.13257.73880395.52460-0.617904.883604.16450K562AGGF1
STAG3L2ENSG00000160828.13288.95450411.55140-0.510203.202402.49900K562AKAP8L
STAG3L2ENSG00000160828.13259.69900439.55560-0.759203.476802.83460K562AQR
STAG3L2ENSG00000160828.13341.16370431.79800-0.339902.085601.30220K562ATP5C1
STAG3L2ENSG00000160828.13318.71660472.70540-0.568704.727303.15170K562CCDC124
STAG3L2ENSG00000160828.13248.50080400.51200-0.688604.139302.31120K562CKAP4
STAG3L2ENSG00000160828.13221.23120412.06760-0.897306.173805.25490K562DDX47
STAG3L2ENSG00000160828.13307.58650442.92030-0.526104.234403.11830K562DKC1
STAG3L2ENSG00000160828.13155.72610279.70280-0.844904.327502.69050K562EEF2
STAG3L2ENSG00000160828.13172.60680270.24950-0.646803.286702.28640K562EFTUD2
STAG3L2ENSG00000160828.1388.51360191.28210-1.111704.191402.92940K562EIF3A
STAG3L2ENSG00000160828.13309.75200204.143500.601403.450402.53800K562EIF4A3
STAG3L2ENSG00000160828.13303.67320192.588300.656904.629802.25680K562FUBP3
STAG3L2ENSG00000160828.13293.21570212.299800.465802.413101.84100K562FXR1
STAG3L2ENSG00000160828.13383.32290499.44000-0.381802.130201.46150K562GRSF1
STAG3L2ENSG00000160828.13293.44950436.79330-0.573803.593902.63830K562KIF1C
STAG3L2ENSG00000160828.13235.98140418.09080-0.825106.800904.82670K562MAK16
STAG3L2ENSG00000160828.13313.88490489.31400-0.640505.321903.97620K562MBNL1
STAG3L2ENSG00000160828.13228.44550342.97070-0.586202.612101.75930K562NAA15
STAG3L2ENSG00000160828.13172.18040266.27660-0.629002.944901.59610K562NONO
STAG3L2ENSG00000160828.13107.82550218.07920-1.016203.368502.24440K562PABPN1
STAG3L2ENSG00000160828.13111.01660262.98380-1.244208.400907.09030K562PRPF8
STAG3L2ENSG00000160828.13357.24230256.625800.477102.892902.21660K562PTBP1
STAG3L2ENSG00000160828.13363.81020649.51240-0.836208.258406.84720K562PUF60
STAG3L2ENSG00000160828.13226.53130408.21630-0.849606.044705.27970K562PUS1
STAG3L2ENSG00000160828.13193.35470397.68710-1.0404010.023508.92130K562RBM15
STAG3L2ENSG00000160828.13124.79440267.88070-1.102006.821105.52830K562RPS19
STAG3L2ENSG00000160828.13158.94510268.89230-0.758503.385901.90880K562RRP9
STAG3L2ENSG00000160828.1371.65400131.76810-0.878902.664901.70940K562SF3B1
STAG3L2ENSG00000160828.13173.62930251.59920-0.535102.572701.88740K562SRSF1
STAG3L2ENSG00000160828.13122.89950177.80270-0.532802.084301.38840K562U2AF2
STAG3L2ENSG00000160828.13271.20180413.81780-0.609602.594501.35650K562UTP18
STAG3L2ENSG00000160828.13270.21860363.47910-0.427702.810901.95820K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for STAG3L2 is not available on ENCORE database.





3 RBPs can affect the splicing of STAG3L2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESTAG3L2ENSG00000160828.13chr7-7429983374299941742992847429956974300249743003290.266000.009220.07610includedK562AQR
SESTAG3L2ENSG00000160828.13chr7-743011367430126074300539743006387430380374303920-0.254000.000990.03042excludedHepG2SF3A3
SESTAG3L2ENSG00000160828.13chr7-7430113674301260743005397430063874303803743039200.234000.000590.01808includedK562AGGF1
A3SSSTAG3L2ENSG00000160828.13chr7-7430053974300686743005397430063874303803743039200.110000.002210.01408longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for STAG3L2 is not avaliable on ENCORE database.