RUFY3

General Information

Gene Name       : RUFY3
Gene ID             : ENSG00000018189.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RUFY3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RUFY3ENSG00000018189.1222.6114.5918.60ENCSR000AEF
HepG2RUFY3ENSG00000018189.1210.0913.4011.75ENCSR985KAT
K562RUFY3ENSG00000018189.1211.5512.4912.02ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RUFY3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RUFY3 RNA is bound by 12 proteins.  







eCLIP assay for RUFY3 is not avaliable on ENCORE database.





12 proteins are bound to RUFY3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr47157056371570669+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.130934.39623HepG2PPIG
chr47165577471655833+3'-UTR,intron-Distal4.490815.61723K562MATR3
chr47165575471655904+3'-UTR,intron-Distal5.1298519.02243HepG2PTBP1
chr47165577271655835+3'-UTR,intron-Distal3.490394.97747HepG2MATR3
chr47165575671655843+3'-UTR,intron-Distal3.522378.00020K562PTBP1
chr47166867271668701+3'-UTR,CDS,intron-Distal,intron-Proximal4.080343.02457HepG2BCLAF1
chr47165545371655520+3'-UTR,intron-Distal3.253963.93348K562TARDBP
chr47165532671655374+3'-UTR,intron-Proximal4.130113.02457HepG2BCLAF1
chr47165459071654677+CDS5.389937.15433K562ZNF622
chr47157066971570743+CDS,intron-Distal4.758645.52963HepG2PPIG
chr47165454671654667+CDS4.377107.16838HepG2BCLAF1
chr47163429271634378+CDS3.203124.99842HepG2PPIG
chr47165452271654665+CDS,intron-Proximal3.242786.28688K562UCHL5
chr47165452371654688+CDS3.285018.80587HepG2GRWD1
chr47164880871648908+CDS,intron-Proximal4.054106.23296HepG2BCLAF1
chr47165521171655305+CDS,intron-Proximal3.133594.44630K562ZNF622
chr47163019071630234+CDS,intron-Proximal3.098873.02345K562ZNF622
chr47163425271634284+CDS,intron-Proximal4.248653.77023K562ZNF622
chr47162225671622367+intron-Distal4.246323.74583HepG2PTBP1
chr47165583571655913+intron-Distal3.899468.61515HepG2MATR3
chr47163459171634714+intron-Distal4.802733.98095HepG2HNRNPL
chr47157111971571238+intron-Distal3.643683.00463HepG2NKRF
chr47166492871665000+intron-Distal3.365773.07152HepG2HLTF
chr47165607371656149+intron-Distal3.216573.12625HepG2QKI
chr47165583371655967+intron-Distal5.5929011.47562K562MATR3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RUFY3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RUFY3 is not available on ENCORE database.

  • 55 RBPs can affect the levels of RUFY3.  








The Knockdown/knockout RNA-Seq assay for RUFY3 is not available on ENCORE database.





55 RBPs can affect the gene expression of RUFY3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RUFY3ENSG00000018189.8591.72280402.259700.556706.137705.30430HepG2ACO1
RUFY3ENSG00000018189.8216.76050307.78840-0.505802.485801.53990HepG2ADAR
RUFY3ENSG00000018189.8801.31770531.105200.593304.549003.70680HepG2AUH
RUFY3ENSG00000018189.8205.20220354.27260-0.787803.749102.65970HepG2BCCIP
RUFY3ENSG00000018189.8416.52060310.443600.424002.066901.39160HepG2CIRBP
RUFY3ENSG00000018189.8684.43000434.327000.656003.099702.06590HepG2DDX59
RUFY3ENSG00000018189.8214.70180307.19060-0.516803.579202.85540HepG2DNAJC2
RUFY3ENSG00000018189.8516.59730336.128500.619902.414101.77020HepG2EIF4B
RUFY3ENSG00000018189.8618.56110465.689400.409403.580802.64880HepG2EIF4G1
RUFY3ENSG00000018189.8758.87770609.823100.315402.383401.81770HepG2ETF1
RUFY3ENSG00000018189.8538.47530385.023800.483802.315601.60760HepG2FIP1L1
RUFY3ENSG00000018189.8327.90310198.171500.726404.606903.60760HepG2FUBP3
RUFY3ENSG00000018189.8556.22710433.802700.358502.669201.74900HepG2HNRNPA2B1
RUFY3ENSG00000018189.8478.70800327.119800.549203.415702.64250HepG2HNRNPK
RUFY3ENSG00000018189.8331.75410429.95480-0.374101.988501.40550HepG2HNRNPL
RUFY3ENSG00000018189.8440.03230328.469500.421802.085201.49000HepG2IGF2BP2
RUFY3ENSG00000018189.8595.62960308.204700.950403.403602.31200HepG2IGF2BP3
RUFY3ENSG00000018189.8229.33780342.60000-0.579103.334402.00080HepG2LIN28B
RUFY3ENSG00000018189.8459.01810348.419600.397601.925401.37260HepG2MAGOH
RUFY3ENSG00000018189.8458.14630311.601500.556003.710802.77650HepG2MSI2
RUFY3ENSG00000018189.8483.55720358.642600.431002.151101.58950HepG2NCBP2
RUFY3ENSG00000018189.8527.37780322.580300.709107.633206.81510HepG2PTBP1
RUFY3ENSG00000018189.8576.79020349.394400.723107.141306.20630HepG2QKI
RUFY3ENSG00000018189.8792.62320509.690200.636906.044405.35220HepG2RBM22
RUFY3ENSG00000018189.8549.41310317.085800.792907.699906.62340HepG2RBM25
RUFY3ENSG00000018189.8528.05210359.013400.556504.660903.99270HepG2NELFE
RUFY3ENSG00000018189.8435.55850334.349600.381402.263501.69950HepG2RECQL
RUFY3ENSG00000018189.8467.29670335.874600.476303.338702.69670HepG2SF3B4
RUFY3ENSG00000018189.81143.23910575.660400.9897023.6919022.60140HepG2SRFBP1
RUFY3ENSG00000018189.8510.92150350.569400.543304.424003.86040HepG2SRSF1
RUFY3ENSG00000018189.8440.12740285.197500.625905.770805.02520HepG2SRSF9
RUFY3ENSG00000018189.8701.60180501.708300.483705.615604.78730HepG2SUCLG1
RUFY3ENSG00000018189.8644.04940315.075001.0314015.2781014.11890HepG2TAF15
RUFY3ENSG00000018189.8456.72900289.543300.657505.519604.35200HepG2TIA1
RUFY3ENSG00000018189.8239.06260338.95350-0.503703.538702.91850HepG2TRIM56
RUFY3ENSG00000018189.8479.91310372.765400.364402.473101.90020HepG2UTP3
RUFY3ENSG00000018189.8204.84040341.35050-0.736803.528502.71670HepG2XRN2
RUFY3ENSG00000018189.8559.38510871.05720-0.638906.163705.34770K562AQR
RUFY3ENSG00000018189.8860.20960661.374500.379102.698301.43740K562CIRBP
RUFY3ENSG00000018189.81067.34130830.744400.361404.013303.24790K562DDX47
RUFY3ENSG00000018189.8708.42740563.035400.331302.680401.97030K562EIF2S2
RUFY3ENSG00000018189.8894.865101101.02630-0.299102.634001.71560K562EIF4G2
RUFY3ENSG00000018189.8437.82910541.85700-0.307501.921801.39960K562FXR1
RUFY3ENSG00000018189.8856.81860608.374300.493902.497901.83170K562G3BP2
RUFY3ENSG00000018189.8577.39860750.37250-0.378002.363201.66290K562GRSF1
RUFY3ENSG00000018189.8276.82770462.16780-0.739405.920905.07980K562HNRNPC
RUFY3ENSG00000018189.81398.73460734.528900.9291014.0505012.32100K562HSPD1
RUFY3ENSG00000018189.8299.16040468.71760-0.647804.549502.58070K562LIN28B
RUFY3ENSG00000018189.8788.48700665.204400.245202.075801.41870K562NSUN2
RUFY3ENSG00000018189.8533.07940818.85480-0.619302.397801.49010K562PABPN1
RUFY3ENSG00000018189.8301.10210414.37850-0.460702.380801.54870K562PSIP1
RUFY3ENSG00000018189.8801.01430630.074800.346202.635601.98520K562PTBP1
RUFY3ENSG00000018189.81036.015601251.97480-0.273202.281301.40780K562PUM2
RUFY3ENSG00000018189.81754.140801125.973400.639507.055606.23500K562PUS1
RUFY3ENSG00000018189.8933.33380580.434500.685204.043902.27730K562RAVER1
RUFY3ENSG00000018189.8434.38400604.27150-0.476203.456302.51180K562RBM22
RUFY3ENSG00000018189.8509.23790632.47480-0.312702.082101.34230K562SF3B4
RUFY3ENSG00000018189.8566.37270913.44810-0.689602.649601.38500K562SFPQ
RUFY3ENSG00000018189.8536.88160672.51400-0.325002.640401.72190K562SRPK2
RUFY3ENSG00000018189.8454.65090617.66180-0.442103.224502.46620K562SRSF1
RUFY3ENSG00000018189.8406.33770625.16050-0.621505.097804.12230K562TARDBP
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RUFY3 is not available on ENCORE database.





3 RBPs can affect the splicing of RUFY3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERUFY3ENSG00000018189.8chr4+7160734371607397715883717158846871628235716284090.490000.009760.07964includedK562AQR
A3SSRUFY3ENSG00000018189.8chr4+7165948171659632716595017165963271655085716553090.200000.009650.05133longerK562AQR
A5SSRUFY3ENSG00000018189.8chr4+7165950171659632716595017165962171660511716606110.112000.000120.00683longerHepG2U2AF2
MXERUFY3ENSG00000018189.8chr4+7166051171660611716623797166246371659501716596217166585771665922-0.107000.001780.031922includedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RUFY3 is not avaliable on ENCORE database.