RMND5B

General Information

Gene Name       : RMND5B
Gene ID             : ENSG00000145916.18
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RMND5B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RMND5BENSG00000145916.187.0512.919.98ENCSR000AEF
HepG2RMND5BENSG00000145916.1817.109.1613.13ENCSR985KAT
K562RMND5BENSG00000145916.1826.0919.0222.55ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RMND5B is not avaliable on ENCORE database.



Proteins bound to RNA
  • RMND5B RNA is bound by 16 proteins.  







eCLIP assay for RMND5B is not avaliable on ENCORE database.





16 proteins are bound to RMND5B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr5177575461177575536+3'-UTR7.1477943.30640K562PUM2
chr5177575102177575215+3'-UTR4.348883.41592K562XRCC6
chr5177576979177577035+3'-UTR4.014676.48274K562UPF1
chr5177577411177577442+3'-UTR3.701185.24187K562DDX6
chr5177575340177575408+3'-UTR3.083884.38853K562LIN28B
chr5177570594177570665+3'-UTR,CDS,intron-Proximal3.127143.20348K562PRPF8
chr5177577393177577462+3'-UTR4.614949.96973K562PABPC4
chr5177577393177577403+3'-UTR3.494265.79309K562DDX55
chr5177565102177565407+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.861365.93218HepG2SRSF1
chr5177577393177577411+3'-UTR3.625184.34553K562DDX6
chr5177569943177569995+3'-UTR,CDS,intron-Proximal3.882005.24452HepG2PPIG
chr5177569992177570011+3'-UTR,CDS,intron-Proximal4.4183310.81562K562AQR
chr5177577392177577446+3'-UTR3.739899.74385K562UPF1
chr5177565374177565424+3'-UTR,intron-Distal,intron-Proximal3.957163.28461K562BUD13
chr5177576221177576262+3'-UTR4.595145.24231K562UPF1
chr5177565390177565442+3'-UTR,intron-Distal,intron-Proximal3.238343.18246K562PRPF8
chr5177570706177570774+3'-UTR,CDS,intron-Proximal3.319505.62208HepG2PRPF8
chr5177577403177577456+3'-UTR3.675818.95687K562DDX55
chr5177570660177570770+3'-UTR,CDS,intron-Proximal3.357195.30777HepG2PPIG
chr5177576081177576138+3'-UTR5.396477.21253K562UPF1
chr5177558040177558176+5'-UTR,intron-Distal,intron-Proximal3.695077.56654HepG2PRPF8
chr5177558036177558185+5'-UTR,intron-Distal,intron-Proximal3.434834.35138HepG2NCBP2
chr5177558204177558297+5'-UTR,intron-Distal,intron-Proximal5.1996314.19592K562AQR
chr5177558055177558081+5'-UTR,intron-Proximal4.0110912.50830K562AQR
chr5177558237177558308+5'-UTR,intron-Distal,intron-Proximal4.239015.48791HepG2DDX3X
chr5177558081177558131+5'-UTR,intron-Proximal3.6996314.47722K562AQR
chr5177565237177565304+CDS,intron-Distal,intron-Proximal4.837773.70131HepG2PRPF8
chr5177565238177565321+CDS,intron-Distal,intron-Proximal3.325373.54074K562RBM15
chr5177571090177571154+CDS,intron-Proximal3.940993.56873HepG2PRPF8
chr5177573201177573292+CDS,intron-Proximal3.005163.47879HepG2PPIG
chr5177565145177565290+CDS,intron-Distal,intron-Proximal3.016953.41438K562BUD13
chr5177569517177569583+intron-Distal,intron-Proximal5.041639.53610K562SF3B4
chr5177570591177570628+intron-Proximal4.784594.09264K562AQR
chr5177570011177570038+intron-Proximal4.4648911.32600K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RMND5B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RMND5B is not available on ENCORE database.

  • 56 RBPs can affect the levels of RMND5B.  








The Knockdown/knockout RNA-Seq assay for RMND5B is not available on ENCORE database.





56 RBPs can affect the gene expression of RMND5B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RMND5BENSG00000145916.14543.21830353.213800.620903.907002.80060HepG2ABCF1
RMND5BENSG00000145916.14360.04840242.949200.567403.240602.59930HepG2BOP1
RMND5BENSG00000145916.14580.90210366.043300.666204.484803.67290HepG2EIF4A3
RMND5BENSG00000145916.14305.97580205.032700.577502.943602.27920HepG2HNRNPA1
RMND5BENSG00000145916.14448.92490228.056400.977008.601307.43140HepG2HNRNPC
RMND5BENSG00000145916.14249.30470347.21020-0.477902.287101.64860HepG2HNRNPK
RMND5BENSG00000145916.14318.67740226.549000.492203.105702.46600HepG2HNRNPU
RMND5BENSG00000145916.14356.11920231.413100.621805.506304.50200HepG2ILF2
RMND5BENSG00000145916.14501.66860369.633300.440502.324101.72180HepG2MAGOH
RMND5BENSG00000145916.14555.16930376.840000.558905.451904.38850HepG2NOL12
RMND5BENSG00000145916.14130.75990239.26930-0.871703.690202.65400HepG2PABPC1
RMND5BENSG00000145916.14453.17050338.664200.420102.069501.43700HepG2PABPC4
RMND5BENSG00000145916.14437.15190330.763200.402202.627702.09230HepG2PTBP1
RMND5BENSG00000145916.14524.60310381.924200.457804.799304.06300HepG2PUM1
RMND5BENSG00000145916.14508.39720350.420900.536805.180304.38540HepG2PUS1
RMND5BENSG00000145916.14511.49080358.234400.513703.790803.07630HepG2QKI
RMND5BENSG00000145916.14536.91690368.111500.544504.534903.87360HepG2NELFE
RMND5BENSG00000145916.14367.96070224.128700.715103.636002.55360HepG2RPS10
RMND5BENSG00000145916.14281.38160201.754600.479802.730802.08930HepG2SAFB2
RMND5BENSG00000145916.14431.72190557.92980-0.370002.669102.17370HepG2SRFBP1
RMND5BENSG00000145916.14295.38280220.151800.424002.084601.63800HepG2TIAL1
RMND5BENSG00000145916.14417.10900317.203500.394902.378701.81400HepG2UTP3
RMND5BENSG00000145916.14377.89200275.994500.453203.097402.39390HepG2ZC3H8
RMND5BENSG00000145916.14627.36490361.343600.7958012.4398011.48850HepG2ZNF622
RMND5BENSG00000145916.14546.129801347.79590-1.3033039.9323037.82920K562AGGF1
RMND5BENSG00000145916.141157.634201480.91610-0.355302.708801.74010K562AKAP8
RMND5BENSG00000145916.14742.077201402.41620-0.9183015.3957013.63910K562AKAP8L
RMND5BENSG00000145916.141356.105901681.27480-0.310102.542001.97410K562AQR
RMND5BENSG00000145916.141145.096901471.42200-0.361704.281103.11780K562ATP5C1
RMND5BENSG00000145916.141077.487901509.26670-0.486207.494505.92620K562DKC1
RMND5BENSG00000145916.14941.37190739.265100.348603.231201.91060K562EIF2S1
RMND5BENSG00000145916.14978.140801220.02730-0.318803.344402.56550K562EIF2S2
RMND5BENSG00000145916.14918.26430703.225600.384802.795401.96940K562EIF4A3
RMND5BENSG00000145916.141279.763301044.669300.292702.105901.36220K562FIP1L1
RMND5BENSG00000145916.14892.75780731.316700.287702.005701.47460K562FXR1
RMND5BENSG00000145916.14338.52040454.20440-0.424101.894601.32170K562G3BP2
RMND5BENSG00000145916.14534.183701077.81650-1.012705.741803.73390K562HNRNPA2B1
RMND5BENSG00000145916.141757.48130833.528601.0761023.5850021.91960K562HNRNPC
RMND5BENSG00000145916.14789.651401488.40710-0.9145015.5775013.04730K562KIF1C
RMND5BENSG00000145916.141026.845201424.69640-0.472404.586603.09740K562MAK16
RMND5BENSG00000145916.141219.579001667.37890-0.451203.535402.48920K562MBNL1
RMND5BENSG00000145916.14624.161201168.70370-0.904908.874406.93900K562NAA15
RMND5BENSG00000145916.14508.71750943.12970-0.890604.517403.16750K562PABPN1
RMND5BENSG00000145916.14466.90200694.72720-0.573303.067902.03830K562PCBP2
RMND5BENSG00000145916.141466.051001186.032300.305702.032001.33280K562PPIG
RMND5BENSG00000145916.14504.23870739.05110-0.551604.292503.35940K562PRPF8
RMND5BENSG00000145916.141009.39040758.764900.411703.225502.51540K562PTBP1
RMND5BENSG00000145916.141543.222902130.81300-0.465504.637503.58480K562PUF60
RMND5BENSG00000145916.141771.124102220.67970-0.326303.941502.79100K562PUM2
RMND5BENSG00000145916.14597.864001391.00190-1.2182021.6825020.18790K562PUS1
RMND5BENSG00000145916.14728.311801355.16450-0.8958018.6193017.04460K562RBM15
RMND5BENSG00000145916.141007.73960727.247100.470502.807901.96130K562RBM22
RMND5BENSG00000145916.14610.118401160.35010-0.927404.408702.35160K562RBM39
RMND5BENSG00000145916.14846.02000681.844900.311102.215401.33130K562RCC2
RMND5BENSG00000145916.14771.61620538.196800.519603.191302.10580K562RPS3
RMND5BENSG00000145916.14487.58490862.71510-0.823203.285101.94450K562SF1
RMND5BENSG00000145916.14482.75090990.46610-1.036805.515503.57760K562SNRNP200
RMND5BENSG00000145916.14686.73530519.449300.402702.306401.36120K562SRSF4
RMND5BENSG00000145916.14846.685901410.13890-0.735903.878602.25610K562UTP18
RMND5BENSG00000145916.141032.837701210.52910-0.229002.263101.49100K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RMND5B is not available on ENCORE database.





20 RBPs can affect the splicing of RMND5B :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERMND5BENSG00000145916.14chr5+177562173177562313177558237177558377177565108177565259-0.122000.002170.07147excludedK562PTBP1
SERMND5BENSG00000145916.14chr5+1775604521775605701775582371775583771775651081775652590.202000.003530.05286includedK562HNRNPC
A3SSRMND5BENSG00000145916.14chr5+1775705971775706451775706271775706451775698861775699930.062000.000630.00459longerK562AQR
RIRMND5BENSG00000145916.14chr5+1775695831775699931775695831775697291775698521775699930.082000.001860.06733includedHepG2AKAP1
RIRMND5BENSG00000145916.14chr5+1775706271775711091775706271775707281775709421775711090.267000.000320.00708includedK562SF3B4
RIRMND5BENSG00000145916.14chr5+1775695831775699931775695831775697291775698521775699930.170000.000620.01215includedK562SF3B4
RIRMND5BENSG00000145916.14chr5+1775706271775711091775706271775707281775709421775711090.228000.003880.06338includedHepG2PCBP2
RIRMND5BENSG00000145916.14chr5+1775695831775699931775695831775697291775698521775699930.164000.000010.00131includedHepG2DDX3X
RIRMND5BENSG00000145916.14chr5+1775695831775699931775695831775697291775698521775699930.293000.001540.04940includedK562SF3B1
RIRMND5BENSG00000145916.14chr5+1775695831775699931775695831775697291775698521775699930.260000.000030.00185includedHepG2UCHL5
RIRMND5BENSG00000145916.14chr5+1775706271775711091775706271775707281775709421775711090.113000.009770.08791includedK562AGGF1
RIRMND5BENSG00000145916.14chr5+1775695831775699931775695831775697291775698521775699930.107000.006050.06261includedK562PRPF8
RIRMND5BENSG00000145916.14chr5+1775695831775699931775695831775697291775698521775699930.261000.000000.00000includedHepG2MATR3
RIRMND5BENSG00000145916.14chr5+1775695831775699931775695831775697291775698521775699930.203000.001920.02620includedHepG2PCBP1
RIRMND5BENSG00000145916.14chr5+1775706271775711091775706271775707281775709421775711090.262000.011090.08608includedHepG2U2AF1
RIRMND5BENSG00000145916.14chr5+1775695831775699931775695831775697291775698521775699930.110000.000410.01251includedHepG2KHSRP
RIRMND5BENSG00000145916.14chr5+1775695831775699931775695831775697291775698521775699930.227000.007690.09669includedHepG2TIAL1
RIRMND5BENSG00000145916.14chr5+1775695831775699931775695831775697291775698521775699930.072000.006760.06338includedHepG2NCBP2
RIRMND5BENSG00000145916.14chr5+1775695831775699931775695831775697291775698521775699930.140000.010230.06322includedHepG2SF3B4
RIRMND5BENSG00000145916.14chr5+1775695831775699931775695831775697291775698521775699930.137000.001560.01784includedHepG2RBM22
RIRMND5BENSG00000145916.14chr5+1775695831775699931775695831775697291775698521775699930.174000.000020.00033includedK562EFTUD2
RIRMND5BENSG00000145916.14chr5+1775706271775711091775706271775707281775709421775711090.139000.000030.00030includedK562AQR
RIRMND5BENSG00000145916.14chr5+1775695831775699931775695831775697291775698521775699930.236000.000000.00000includedK562AQR
RIRMND5BENSG00000145916.14chr5+1775695831775699931775695831775697291775698521775699930.079000.005490.07178includedK562FXR1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RMND5B is not avaliable on ENCORE database.