RAPGEFL1

General Information

Gene Name       : RAPGEFL1
Gene ID             : ENSG00000108352.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RAPGEFL1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RAPGEFL1ENSG00000108352.120.741.501.12ENCSR000AEF
HepG2RAPGEFL1ENSG00000108352.124.152.893.52ENCSR985KAT
K562RAPGEFL1ENSG00000108352.121.401.851.62ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RAPGEFL1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RAPGEFL1 RNA is bound by 8 proteins.  







eCLIP assay for RAPGEFL1 is not avaliable on ENCORE database.





8 proteins are bound to RAPGEFL1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr173833437138334418+5'-UTR,intron-Distal,intron-Proximal4.810163.46375HepG2XRN2
chr173833423938334276+5'-UTR,intron-Distal3.593687.88033HepG2NKRF
chr173833422138334268+5'-UTR,intron-Distal3.119994.98502HepG2XRN2
chr173833421238334274+5'-UTR,intron-Distal4.013863.81373HepG2DROSHA
chr173833442738334514+5'-UTR,intron-Distal,intron-Proximal3.562857.20706HepG2CSTF2T
chr173833424038334278+5'-UTR,intron-Distal3.694378.96794HepG2CSTF2T
chr173833451538334621+5'-UTR,intron-Distal4.096353.32766HepG2SRSF7
chr173833442138334510+5'-UTR,intron-Distal,intron-Proximal3.854414.46513HepG2NKRF
chr173833336338333421+5'-UTR,CDS,intron-Proximal3.402584.54206HepG2PRPF8
chr173834503738345127+CDS,intron-Proximal3.955943.50006HepG2SF3B4
chr173834757838347655+CDS3.485233.64266HepG2PPIG
chr173833421938334240+intron-Distal4.058688.29908HepG2CSTF2T
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RAPGEFL1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RAPGEFL1 is not available on ENCORE database.

  • 70 RBPs can affect the levels of RAPGEFL1.  








The Knockdown/knockout RNA-Seq assay for RAPGEFL1 is not available on ENCORE database.





70 RBPs can affect the gene expression of RAPGEFL1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RAPGEFL1ENSG00000108352.7474.35800277.968600.771005.495704.21760HepG2ABCF1
RAPGEFL1ENSG00000108352.7150.63570225.62960-0.582902.082001.61320HepG2AKAP1
RAPGEFL1ENSG00000108352.7242.29220353.58200-0.545303.820403.03800HepG2AUH
RAPGEFL1ENSG00000108352.7240.74220153.756200.646703.067702.44100HepG2BOP1
RAPGEFL1ENSG00000108352.7306.66450208.902500.553702.303501.42200HepG2CCAR1
RAPGEFL1ENSG00000108352.7307.76140141.154601.124408.369607.22780HepG2CPSF6
RAPGEFL1ENSG00000108352.7379.20070229.072900.727105.705104.15920HepG2CPSF7
RAPGEFL1ENSG00000108352.7218.84740145.083000.592902.916201.87090HepG2YBX3
RAPGEFL1ENSG00000108352.7173.20950274.81290-0.665904.171403.41280HepG2CELF1
RAPGEFL1ENSG00000108352.7106.55810199.51800-0.904904.703403.84520HepG2DDX21
RAPGEFL1ENSG00000108352.7108.82780168.26080-0.628702.104001.42000HepG2DDX55
RAPGEFL1ENSG00000108352.7321.01740178.457700.847005.191704.39430HepG2EIF2S1
RAPGEFL1ENSG00000108352.7237.20960134.853700.814704.268703.16270HepG2EIF3D
RAPGEFL1ENSG00000108352.7567.14720405.986500.482204.177303.46490HepG2ETF1
RAPGEFL1ENSG00000108352.7405.66630280.714400.531102.731501.96710HepG2FIP1L1
RAPGEFL1ENSG00000108352.7293.52340143.758501.029703.784102.87300HepG2FUBP3
RAPGEFL1ENSG00000108352.7135.01160217.73780-0.689502.723001.61460HepG2FUS
RAPGEFL1ENSG00000108352.7329.76870184.595700.837005.244604.34200HepG2G3BP1
RAPGEFL1ENSG00000108352.7365.57210196.042500.898906.281304.92960HepG2G3BP2
RAPGEFL1ENSG00000108352.7180.28330120.071800.586302.095701.32090HepG2GEMIN5
RAPGEFL1ENSG00000108352.7190.50700271.55750-0.511402.595701.68720HepG2HNRNPA2B1
RAPGEFL1ENSG00000108352.7323.29470228.256500.502102.200401.55540HepG2HNRNPF
RAPGEFL1ENSG00000108352.7503.47320187.045801.4284016.6697015.10500HepG2HNRNPK
RAPGEFL1ENSG00000108352.7170.95770269.14930-0.654804.288203.46250HepG2HNRNPL
RAPGEFL1ENSG00000108352.797.00850152.69560-0.654502.147401.58610HepG2HNRNPLL
RAPGEFL1ENSG00000108352.7102.84130193.77200-0.913903.006702.01620HepG2HNRNPM
RAPGEFL1ENSG00000108352.7291.77280158.914300.876507.380506.42790HepG2HNRNPU
RAPGEFL1ENSG00000108352.7394.32660187.618301.071506.483705.49010HepG2IGF2BP2
RAPGEFL1ENSG00000108352.7236.04050162.324700.540102.533301.82820HepG2ILF2
RAPGEFL1ENSG00000108352.7256.30060183.617400.481002.692601.68500HepG2KIF1C
RAPGEFL1ENSG00000108352.7331.60250220.686400.587402.682701.86530HepG2LARP4
RAPGEFL1ENSG00000108352.776.93120200.21950-1.379907.582706.57760HepG2MATR3
RAPGEFL1ENSG00000108352.7303.61470204.922200.567102.520201.91410HepG2NCBP2
RAPGEFL1ENSG00000108352.7217.81510292.99260-0.427802.102201.43580HepG2NOL12
RAPGEFL1ENSG00000108352.7291.79060175.788600.731005.314404.51670HepG2PCBP1
RAPGEFL1ENSG00000108352.7648.60820279.691801.2134017.5994016.27140HepG2PUF60
RAPGEFL1ENSG00000108352.7166.39680296.91070-0.835407.018506.16310HepG2PUM1
RAPGEFL1ENSG00000108352.7132.73680204.59140-0.624203.258002.60250HepG2PUS1
RAPGEFL1ENSG00000108352.770.62960198.82280-1.493106.846605.76290HepG2RAVER1
RAPGEFL1ENSG00000108352.7370.06410153.053101.2736010.221206.85750HepG2RBM14
RAPGEFL1ENSG00000108352.7173.10120339.32400-0.971008.651107.85360HepG2RBM22
RAPGEFL1ENSG00000108352.771.12660175.81490-1.305607.587206.51800HepG2RBM25
RAPGEFL1ENSG00000108352.7393.36350199.067500.982508.940408.06960HepG2NELFE
RAPGEFL1ENSG00000108352.7355.11520185.408500.937508.545707.55140HepG2RECQL
RAPGEFL1ENSG00000108352.7336.60390245.907100.452802.017301.42310HepG2RPLP0
RAPGEFL1ENSG00000108352.7318.48250195.426400.704503.306702.27360HepG2RPS10
RAPGEFL1ENSG00000108352.7226.38160336.57380-0.572202.693302.02830HepG2SF3A3
RAPGEFL1ENSG00000108352.7117.68030203.08200-0.787203.448702.36330HepG2SMNDC1
RAPGEFL1ENSG00000108352.7179.04010383.24400-1.0980013.0313012.15840HepG2SRFBP1
RAPGEFL1ENSG00000108352.7113.61460194.38180-0.774703.670403.14490HepG2SRSF1
RAPGEFL1ENSG00000108352.7443.66390224.258800.9842011.9059010.63610HepG2SRSF7
RAPGEFL1ENSG00000108352.7371.13500158.141701.2306015.7364014.61360HepG2SRSF9
RAPGEFL1ENSG00000108352.7174.32580314.06610-0.849307.023406.11140HepG2SUCLG1
RAPGEFL1ENSG00000108352.7188.07640290.41010-0.626802.765501.44080HepG2SUGP2
RAPGEFL1ENSG00000108352.7292.11780174.723600.741405.216104.48690HepG2TAF15
RAPGEFL1ENSG00000108352.7473.54970281.750400.749002.940501.83970HepG2TBRG4
RAPGEFL1ENSG00000108352.7403.07140273.256100.560702.366301.56410HepG2TUFM
RAPGEFL1ENSG00000108352.796.40630240.21540-1.317105.005004.17390HepG2U2AF1
RAPGEFL1ENSG00000108352.7145.17210289.24320-0.994504.825603.70260HepG2UBE2L3
RAPGEFL1ENSG00000108352.7248.57660153.345200.696802.305101.39500HepG2UPF2
RAPGEFL1ENSG00000108352.7283.46220161.744800.809304.241202.88030HepG2XPO5
RAPGEFL1ENSG00000108352.7255.10280164.877200.629602.405301.72510HepG2XRN2
RAPGEFL1ENSG00000108352.7171.2644090.745700.916204.574303.01880K562CCDC124
RAPGEFL1ENSG00000108352.7104.4362054.097100.948902.922802.31150K562HNRNPC
RAPGEFL1ENSG00000108352.763.52860107.17570-0.754502.080801.35940K562PCBP3
RAPGEFL1ENSG00000108352.740.0362082.20430-1.037903.054602.21160K562POLR2G
RAPGEFL1ENSG00000108352.791.0357048.501800.908302.326701.50350K562PSIP1
RAPGEFL1ENSG00000108352.793.9257047.295600.989703.464002.73160K562PTBP1
RAPGEFL1ENSG00000108352.7234.05850158.683200.560602.206001.47850K562PUF60
RAPGEFL1ENSG00000108352.7112.1309045.330201.306505.556904.31620K562RBM22
RAPGEFL1ENSG00000108352.7106.6777047.707601.160903.494102.24470K562NELFE
RAPGEFL1ENSG00000108352.789.6106045.262100.985302.117701.40940K562TIA1
RAPGEFL1ENSG00000108352.791.8211046.651800.976802.764801.82860K562TIAL1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RAPGEFL1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of RAPGEFL1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for RAPGEFL1 is not avaliable on ENCORE database.