RAD17

General Information

Gene Name       : RAD17
Gene ID             : ENSG00000152942.18
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: RAD17)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RAD17ENSG00000152942.1849.0532.6140.83ENCSR000AEF
HepG2RAD17ENSG00000152942.1812.2619.6515.95ENCSR985KAT
K562RAD17ENSG00000152942.1829.5233.7031.61ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RAD17 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RAD17 RNA is bound by 7 proteins.  







eCLIP assay for RAD17 is not avaliable on ENCORE database.





7 proteins are bound to RAD17 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr56871040468710504+3'-UTR5.2545739.71249K562PUM2
chr56867049468670534+5'-UTR,CDS,intron-Distal4.567343.89826HepG2BCLAF1
chr56866987368669910+5'-UTR,CDS,intron-Distal3.339634.26492HepG2BCLAF1
chr56866564568665767+5'-UTR,intron-Distal,intron-Proximal3.652826.49064K562DDX3X
chr56866966068669729+5'-UTR,CDS,intron-Distal3.737866.39464HepG2BCLAF1
chr56866567468665747+5'-UTR,intron-Distal4.027305.07081HepG2XPO5
chr56866562968665773+5'-UTR,intron-Distal,intron-Proximal4.038407.38342HepG2NCBP2
chr56866660968666774+5'-UTR,intron-Distal,intron-Proximal3.068377.22523K562KHSRP
chr56866566068665741+5'-UTR,intron-Distal4.288438.30191HepG2DDX3X
chr56868490168684959+CDS,intron-Distal3.846594.09885HepG2BCLAF1
chr56868063068680745+CDS,intron-Distal4.7666211.54096HepG2BCLAF1
chr56868223468682281+CDS,intron-Distal3.842124.93978HepG2BCLAF1
chr56867241368672510+intron-Distal4.385093.30440HepG2QKI
chr56867168168671779+intron-Distal4.235316.54646HepG2QKI
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RAD17 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RAD17 is not available on ENCORE database.

  • 41 RBPs can affect the levels of RAD17.  








The Knockdown/knockout RNA-Seq assay for RAD17 is not available on ENCORE database.





41 RBPs can affect the gene expression of RAD17 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RAD17ENSG00000152942.14643.619601107.84920-0.783503.239902.18070HepG2CCAR1
RAD17ENSG00000152942.14662.98470452.662600.550403.062401.60930HepG2CSTF2T
RAD17ENSG00000152942.14474.68280577.42980-0.282702.184401.43680HepG2DDX19B
RAD17ENSG00000152942.14716.61120488.406700.553004.550803.70490HepG2DDX21
RAD17ENSG00000152942.14588.34270791.50420-0.427902.344101.77140HepG2DDX6
RAD17ENSG00000152942.14514.27630761.03690-0.565404.180203.45990HepG2EIF2S1
RAD17ENSG00000152942.141059.89230872.136700.281202.398301.61050HepG2EIF4G1
RAD17ENSG00000152942.141502.845901163.878200.368704.615503.87470HepG2ETF1
RAD17ENSG00000152942.14329.18350472.73360-0.522103.196102.22430HepG2GEMIN5
RAD17ENSG00000152942.14822.189801105.61940-0.427302.800802.15620HepG2GPKOW
RAD17ENSG00000152942.14386.33290611.96420-0.663603.916202.59400HepG2GRSF1
RAD17ENSG00000152942.14411.61970617.82410-0.585904.536203.66360HepG2HNRNPC
RAD17ENSG00000152942.14636.58840805.40980-0.339403.790603.00900HepG2HNRNPL
RAD17ENSG00000152942.14491.43130853.50810-0.796407.053706.08170HepG2MATR3
RAD17ENSG00000152942.14890.65600724.685100.297402.033101.33490HepG2MSI2
RAD17ENSG00000152942.14779.543401075.96580-0.464902.533001.60960HepG2MTPAP
RAD17ENSG00000152942.14574.48800876.69140-0.609805.207004.16520HepG2NOL12
RAD17ENSG00000152942.14550.73670760.28210-0.465205.015704.23560HepG2PCBP1
RAD17ENSG00000152942.14444.18970836.84370-0.9138012.7042011.55120HepG2PUF60
RAD17ENSG00000152942.141254.97290972.795200.367303.879603.29370HepG2RBM22
RAD17ENSG00000152942.14627.92430860.96320-0.455404.729004.05650HepG2NELFE
RAD17ENSG00000152942.141339.450401044.377400.358902.748702.04420HepG2SF3B1
RAD17ENSG00000152942.141019.13290840.697700.277602.541202.08300HepG2SRSF1
RAD17ENSG00000152942.14797.87780954.00220-0.257802.161801.69420HepG2SSB
RAD17ENSG00000152942.14753.933201028.27340-0.447703.547602.73880HepG2TARDBP
RAD17ENSG00000152942.14998.48850765.909100.382502.146201.58620HepG2U2AF1
RAD17ENSG00000152942.14400.98890719.87190-0.8442012.7257011.58230HepG2UTP3
RAD17ENSG00000152942.14955.00630619.732900.623803.226101.85350HepG2XRCC5
RAD17ENSG00000152942.14934.55920697.336700.422305.357604.47260HepG2ZC3H8
RAD17ENSG00000152942.141198.860901522.71150-0.345004.083903.41840K562AGGF1
RAD17ENSG00000152942.141292.048401584.41270-0.294302.382301.77570K562AKAP8L
RAD17ENSG00000152942.141372.390101794.71270-0.387103.594402.94270K562AQR
RAD17ENSG00000152942.14382.04410536.75370-0.490503.393902.20070K562CCAR1
RAD17ENSG00000152942.141486.963201913.84090-0.364104.735103.26030K562CPEB4
RAD17ENSG00000152942.14566.42950763.99920-0.431702.310801.47650K562EFTUD2
RAD17ENSG00000152942.141645.975101024.501600.683905.926604.80470K562G3BP2
RAD17ENSG00000152942.141094.757001715.64580-0.648102.309201.61520K562GRSF1
RAD17ENSG00000152942.14619.62390981.71340-0.663907.635006.69010K562HNRNPC
RAD17ENSG00000152942.141359.336401789.64070-0.396804.109502.79490K562HNRNPL
RAD17ENSG00000152942.14803.357801456.71680-0.858607.316105.85510K562METAP2
RAD17ENSG00000152942.141751.782502299.61760-0.392603.350002.10530K562MSI2
RAD17ENSG00000152942.141357.834201550.93800-0.191802.144001.47870K562NSUN2
RAD17ENSG00000152942.141319.481101673.95600-0.343302.722901.90940K562PPIG
RAD17ENSG00000152942.143091.547402503.472800.304303.572002.34930K562PUM1
RAD17ENSG00000152942.14890.967601174.70530-0.398902.219101.46990K562RBM22
RAD17ENSG00000152942.141078.087001882.31300-0.804003.850802.21140K562SFPQ
RAD17ENSG00000152942.141240.09960944.392200.392903.928002.94860K562SYNCRIP
RAD17ENSG00000152942.141515.723602021.86890-0.415704.329203.21210K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RAD17 is not available on ENCORE database.





18 RBPs can affect the splicing of RAD17 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERAD17ENSG00000152942.14chr5+6866606868666111686656516866576068666861686669980.376000.000040.00134includedK562SF3B4
SERAD17ENSG00000152942.14chr5+686672806866738468666861686669986866786068668044-0.068000.000430.01016excludedHepG2U2AF1
SERAD17ENSG00000152942.14chr5+687063196870637768695875686959966870985768710628-0.142000.000000.00009excludedK562AKAP8L
SERAD17ENSG00000152942.14chr5+6866728068667384686668616866699868667860686680440.342000.000130.00493includedHepG2HNRNPK
SERAD17ENSG00000152942.14chr5+686696566866991468667860686680446867045468670538-0.105000.010480.09468excludedHepG2U2AF2
SERAD17ENSG00000152942.14chr5+686672806866738468666861686669986866786068668044-0.053000.000000.00000excludedHepG2U2AF2
SERAD17ENSG00000152942.14chr5+6866728068667384686668196866699868667860686680440.120000.006200.05549includedK562AQR
SERAD17ENSG00000152942.14chr5+686696566866991468667860686680446867045468670538-0.103000.000270.00405excludedK562AQR
SERAD17ENSG00000152942.14chr5+686889816868906768687657686878406868918068689327-0.069000.000060.00105excludedK562AQR
SERAD17ENSG00000152942.14chr5+686848606868497268682006686821326868765768687840-0.057000.005850.05287excludedK562AQR
SERAD17ENSG00000152942.14chr5+6866965668669914686678606866804468670454686705380.115000.003540.09989includedK562FXR1
SERAD17ENSG00000152942.14chr5+686696566866991468667860686680446867045468670538-0.128000.007860.08747excludedK562PUS1
SERAD17ENSG00000152942.14chr5+687063196870637768695875686959966870985768710628-0.148000.000000.00006excludedK562PUS1
SERAD17ENSG00000152942.14chr5+686848606868497268682222686822926868765768687840-0.100000.000540.01899excludedHepG2SF3A3
SERAD17ENSG00000152942.14chr5+687063196870637768695875686959966870985768710628-0.133000.000000.00038excludedK562UTP18
SERAD17ENSG00000152942.14chr5+6866728068667384686668616866699868667860686680440.127000.002770.08114includedK562TARDBP
SERAD17ENSG00000152942.14chr5+686678606866804468666861686669986866965668669914-0.176000.000440.01980excludedK562TARDBP
SERAD17ENSG00000152942.14chr5+686696566866991468667860686680446867045468670538-0.132000.004510.08440excludedK562RBM15
SERAD17ENSG00000152942.14chr5+687063196870637768695875686959966870985768710628-0.128000.000010.00056excludedK562RBM15
SERAD17ENSG00000152942.14chr5+687063196870637768695875686959966870985768710628-0.081000.000930.02611excludedK562AGGF1
SERAD17ENSG00000152942.14chr5+686678606866804468666861686669986866965668669914-0.165000.000250.01370excludedK562PTBP1
A3SSRAD17ENSG00000152942.14chr5+686777276867785368677752686778536867045468670538-0.109000.002910.08746shorterK562U2AF2
MXERAD17ENSG00000152942.14chr5+68667860686680446866965668669914686668616866699868670454686705380.115000.000680.016861includedHepG2FTO
MXERAD17ENSG00000152942.14chr5+68667860686680446866965668669914686656686866576068670454686705380.158000.000460.018241includedK562RBM15
MXERAD17ENSG00000152942.14chr5+6866786068668044686696566866991468666861686669986867045468670538-0.182000.000100.003432includedK562DROSHA
MXERAD17ENSG00000152942.14chr5+68667860686680446866965668669914686656686866576068670454686705380.160000.005470.068561includedK562U2AF1
MXERAD17ENSG00000152942.14chr5+68667860686680446866965668669914686656686866576068670454686705380.123000.003730.055581includedK562PUS1
MXERAD17ENSG00000152942.14chr5+68667860686680446866965668669914686672806866738468670454686705380.171000.000010.000101includedK562AQR
MXERAD17ENSG00000152942.14chr5+68667860686680446866965668669914686660726866611168670454686705380.108000.000100.001161includedK562AQR
MXERAD17ENSG00000152942.14chr5+6866686168666998686672806866738468665638686657606866786068668044-0.125000.003840.028792includedK562AQR
MXERAD17ENSG00000152942.14chr5+68667280686673846866786068668044686668616866699868669656686699140.124000.000020.001141includedK562TARDBP
MXERAD17ENSG00000152942.14chr5+6866686168666998686678606866804468666072686661116866965668669914-0.528000.000310.006332includedHepG2SFPQ
MXERAD17ENSG00000152942.14chr5+6868222268682292686848606868497268682006686821326868765768687840-0.104000.009110.050142includedHepG2U2AF2
MXERAD17ENSG00000152942.14chr5+6866686168666998686678606866804468666072686661116866965668669914-0.393000.015420.076482includedHepG2U2AF2
MXERAD17ENSG00000152942.14chr5+68667280686673846866786068668044686668616866699868669656686699140.068000.002520.092811includedK562TIA1
MXERAD17ENSG00000152942.14chr5+68667280686673846866786068668044686668616866699868669656686699140.080000.000390.028801includedK562HNRNPK
MXERAD17ENSG00000152942.14chr5+68667860686680446866965668669914686656686866576068670454686705380.121000.002480.079311includedK562AKAP8L

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RAD17 is not avaliable on ENCORE database.