PHF2

General Information

Gene Name : PHF2
Gene ID : ENSG00000197724.10
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PHF2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PHF2	ENSG00000197724.10	3.81	5.47	4.64	ENCSR000AEF
HepG2	PHF2	ENSG00000197724.10	8.22	7.57	7.90	ENCSR985KAT
K562	PHF2	ENSG00000197724.10	7.10	6.55	6.82	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PHF2 is not avaliable on ENCORE database.

Proteins bound to RNA

PHF2 RNA is bound by 37 proteins.

eCLIP assay for PHF2 is not avaliable on ENCORE database.

37 proteins are bound to PHF2 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr9	96440306	96440369	+	3'-UTR	4.03969	3.35877	HepG2	UPF1
chr9	96441427	96441516	+	3'-UTR	4.05128	8.10367	HepG2	FUBP3
chr9	96441437	96441527	+	3'-UTR	3.11480	4.76726	K562	DDX6
chr9	96441045	96441065	+	3'-UTR	4.14169	3.54010	K562	UPF1
chr9	96440535	96440667	+	3'-UTR	5.25717	16.54049	K562	UPF1
chr9	96441462	96441532	+	3'-UTR	3.91811	12.82939	K562	TIA1
chr9	96441445	96441516	+	3'-UTR	3.66331	5.86738	HepG2	TIAL1
chr9	96441179	96441237	+	3'-UTR	3.70293	5.45902	K562	TIA1
chr9	96441433	96441529	+	3'-UTR	4.21760	6.14390	K562	PABPC4
chr9	96441464	96441517	+	3'-UTR	4.90111	5.89429	K562	PUM1
chr9	96441425	96441517	+	3'-UTR	5.38301	41.63041	K562	PUM2
chr9	96441715	96441772	+	3'-UTR	5.29805	13.84968	K562	PUM2
chr9	96440984	96441013	+	3'-UTR	5.11478	6.43721	K562	PUM2
chr9	96441168	96441246	+	3'-UTR	3.85243	17.77425	K562	UPF1
chr9	96440439	96440490	+	3'-UTR	4.22888	7.15603	K562	UPF1
chr9	96441468	96441519	+	3'-UTR	4.59525	5.48435	HepG2	TIA1
chr9	96440974	96441000	+	3'-UTR	4.46041	4.22051	K562	UPF1
chr9	96398778	96398840	+	CDS,intron-Proximal	4.53128	5.01842	HepG2	PRPF8
chr9	96436137	96436194	+	CDS,intron-Proximal	4.98607	6.04760	K562	AQR
chr9	96422509	96422544	+	CDS,intron-Proximal	3.33362	3.02345	K562	ZNF622
chr9	96425813	96425873	+	CDS,intron-Distal	4.51506	4.72838	K562	UCHL5
chr9	96416704	96416774	+	CDS,intron-Distal	3.29466	4.53005	K562	YBX3
chr9	96418301	96418364	+	CDS,intron-Distal,intron-Proximal	4.72183	5.17615	K562	AQR
chr9	96392251	96392341	+	CDS,intron-Proximal	3.60089	3.05161	HepG2	PPIG
chr9	96433101	96433194	+	intron-Distal	3.53080	4.51074	HepG2	RBFOX2
chr9	96432852	96432907	+	intron-Distal	4.81300	4.55417	K562	TBRG4
chr9	96412644	96412703	+	intron-Distal	5.63408	13.06280	HepG2	AGGF1
chr9	96426019	96426142	+	intron-Distal	4.35622	4.41148	HepG2	GTF2F1
chr9	96433191	96433261	+	intron-Distal	7.47240	22.94093	K562	DHX30
chr9	96339890	96339955	+	intron-Distal	3.98188	3.76710	K562	NONO
chr9	96412576	96412644	+	intron-Distal	6.09000	20.33291	HepG2	AGGF1
chr9	96342543	96342617	+	intron-Distal	3.43345	3.77567	K562	NONO
chr9	96412054	96412134	+	intron-Distal	3.15441	4.82740	K562	AKAP8L
chr9	96411530	96411556	+	intron-Distal,intron-Proximal	3.71492	3.37631	K562	HNRNPL
chr9	96342229	96342311	+	intron-Distal	4.14097	3.57432	K562	NONO
chr9	96435301	96435396	+	intron-Distal	4.62229	3.78860	K562	AKAP1
chr9	96412459	96412501	+	intron-Distal	3.65516	7.11351	HepG2	AGGF1
chr9	96412168	96412261	+	intron-Distal	5.79538	12.57551	K562	HNRNPL
chr9	96381752	96381795	+	intron-Distal	4.55192	4.19739	K562	EIF4G2
chr9	96427868	96427947	+	intron-Distal,intron-Proximal	5.05684	7.84160	HepG2	SF3B4
chr9	96412089	96412144	+	intron-Distal	3.96957	5.07081	HepG2	XPO5
chr9	96433101	96433176	+	intron-Distal	6.40817	13.79047	K562	DDX52
chr9	96412582	96412645	+	intron-Distal	8.02041	58.36472	K562	AGGF1
chr9	96412703	96412771	+	intron-Distal	4.24714	8.01034	HepG2	AGGF1
chr9	96350587	96350649	+	intron-Distal	4.18506	4.19345	HepG2	CSTF2T
chr9	96435418	96435552	+	intron-Distal	6.20584	28.76260	K562	DHX30
chr9	96428212	96428266	+	intron-Distal,intron-Proximal	5.39908	5.58036	HepG2	EFTUD2
chr9	96342617	96342672	+	intron-Distal	3.25644	3.80158	K562	NONO
chr9	96433080	96433245	+	intron-Distal	3.74914	6.30386	K562	DDX6
chr9	96412208	96412251	+	intron-Distal	4.03316	6.14017	HepG2	HNRNPL
chr9	96412534	96412582	+	intron-Distal	7.91317	55.53681	K562	AGGF1
chr9	96340000	96340071	+	intron-Distal	3.03019	3.14895	K562	NONO
chr9	96411537	96411571	+	intron-Distal,intron-Proximal	4.31905	3.56692	HepG2	AGGF1
chr9	96423352	96423427	+	intron-Distal	4.29095	4.89657	K562	EIF4G2
chr9	96412420	96412459	+	intron-Distal	3.79787	7.11351	HepG2	AGGF1
chr9	96350258	96350341	+	intron-Distal	4.11631	3.63902	HepG2	CSTF2T
chr9	96433107	96433191	+	intron-Distal	5.44476	22.45021	K562	DHX30
chr9	96425952	96426140	+	intron-Distal,intron-Proximal	5.40481	21.03580	K562	HNRNPL
chr9	96412655	96412758	+	intron-Distal	5.64656	7.68989	HepG2	QKI
chr9	96435420	96435521	+	intron-Distal	5.45121	7.49354	K562	DDX6
chr9	96435300	96435372	+	intron-Distal	4.37219	4.56734	HepG2	FAM120A
chr9	96362498	96362546	+	intron-Distal	5.15943	5.62492	K562	EIF4G2
chr9	96426079	96426137	+	intron-Distal	5.03027	5.04227	HepG2	HNRNPL
chr9	96362337	96362476	+	intron-Distal	4.39899	3.69425	K562	TARDBP
chr9	96411864	96411990	+	intron-Distal	3.97723	11.18724	K562	HNRNPL
chr9	96412645	96412675	+	intron-Distal	6.35282	33.41775	K562	AGGF1
chr9	96435417	96435511	+	intron-Distal	4.21177	6.95984	K562	EFTUD2
chr9	96381021	96381156	+	intron-Distal	3.25809	3.69826	K562	TARDBP
chr9	96412675	96412772	+	intron-Distal	6.56014	61.78261	K562	AGGF1
chr9	96435413	96435534	+	intron-Distal	3.65093	3.14313	K562	SAFB
chr9	96412340	96412460	+	intron-Distal	8.40901	80.54402	K562	AGGF1
chr9	96412044	96412152	+	intron-Distal	6.36201	23.59813	HepG2	AGGF1
chr9	96435420	96435516	+	intron-Distal	5.46278	7.84503	K562	TBRG4
chr9	96412004	96412046	+	intron-Distal	3.26264	5.98214	HepG2	HNRNPL
chr9	96435263	96435402	+	intron-Distal	7.56435	25.98633	K562	DDX52
chr9	96412046	96412147	+	intron-Distal	4.96412	27.54280	HepG2	HNRNPL
chr9	96432436	96432473	+	intron-Distal	4.80599	6.58558	K562	DHX30
chr9	96339431	96339485	+	intron-Distal	3.10331	3.49516	HepG2	CSTF2T
chr9	96425017	96425104	+	intron-Distal,intron-Proximal	5.69621	8.04355	K562	EIF4G2
chr9	96435264	96435393	+	intron-Distal	5.84403	9.45304	K562	TBRG4
chr9	96412586	96412629	+	intron-Distal	4.06213	7.41200	HepG2	HNRNPL
chr9	96435263	96435350	+	intron-Distal	6.22667	9.65924	K562	GEMIN5
chr9	96412530	96412586	+	intron-Distal	4.59977	11.01721	HepG2	HNRNPL
chr9	96412385	96412492	+	intron-Distal	5.60933	11.85167	K562	HNRNPL
chr9	96412464	96412508	+	intron-Distal	5.60773	9.16603	HepG2	HNRNPL
chr9	96412006	96412142	+	intron-Distal	6.64837	26.40687	K562	HNRNPL
chr9	96343170	96343283	+	intron-Distal	3.94389	3.27618	K562	RBFOX2
chr9	96435222	96435338	+	intron-Distal	5.57172	7.68318	K562	DDX6
chr9	96435263	96435390	+	intron-Distal	8.00759	38.07400	K562	DHX30
chr9	96411847	96411905	+	intron-Distal	5.23985	34.33712	K562	AGGF1
chr9	96412501	96412576	+	intron-Distal	5.26831	19.95287	HepG2	AGGF1
chr9	96377543	96377669	+	intron-Distal	4.17634	3.88340	K562	TARDBP
chr9	96433191	96433263	+	intron-Distal	4.77791	6.10036	K562	DDX52
chr9	96413601	96413655	+	intron-Distal	3.83058	3.37809	K562	HNRNPL
chr9	96425976	96426076	+	intron-Distal,intron-Proximal	3.83839	34.82269	K562	AGGF1
chr9	96381191	96381274	+	intron-Distal	4.51628	4.89657	K562	EIF4G2
chr9	96412152	96412259	+	intron-Distal	5.15300	16.76077	HepG2	AGGF1
chr9	96433109	96433226	+	intron-Distal	5.52447	10.60572	K562	GEMIN5
chr9	96357491	96357602	+	intron-Distal	4.65604	5.54528	HepG2	QKI
chr9	96432460	96432495	+	intron-Distal	4.77791	3.17679	K562	DDX52
chr9	96412628	96412745	+	intron-Distal	6.27635	19.82916	K562	HNRNPL
chr9	96412491	96412534	+	intron-Distal	6.70154	48.78222	K562	AGGF1
chr9	96426076	96426141	+	intron-Distal	4.59581	36.87641	K562	AGGF1
chr9	96412147	96412197	+	intron-Distal	5.69092	9.44554	HepG2	HNRNPL
chr9	96435399	96435517	+	intron-Distal	5.98880	14.85206	K562	PHF6
chr9	96412115	96412226	+	intron-Distal	7.20078	106.22510	K562	AGGF1
chr9	96432848	96432892	+	intron-Distal	4.98849	5.32760	K562	DHX30
chr9	96427637	96427709	+	intron-Distal	4.06815	6.49116	K562	AGGF1
chr9	96425945	96426079	+	intron-Distal,intron-Proximal	3.79209	4.78027	HepG2	HNRNPL
chr9	96411863	96412004	+	intron-Distal	3.44576	10.18786	HepG2	HNRNPL
chr9	96411905	96411992	+	intron-Distal	6.57790	65.56170	K562	AGGF1
chr9	96435325	96435493	+	intron-Distal	4.30716	3.91585	HepG2	PRPF4
chr9	96433062	96433237	+	intron-Distal	7.02889	17.66322	K562	PHF6
chr9	96362546	96362596	+	intron-Distal	5.00948	4.67055	K562	EIF4G2
chr9	96413039	96413114	+	intron-Distal	5.77476	19.58929	K562	AGGF1
chr9	96412066	96412137	+	intron-Distal	4.32920	3.31153	K562	GTF2F1
chr9	96362596	96362662	+	intron-Distal	4.36972	5.80675	K562	EIF4G2
chr9	96433110	96433171	+	intron-Distal	4.91622	5.34664	K562	TBRG4
chr9	96426568	96426672	+	intron-Distal	3.92865	4.95463	K562	GTF2F1
chr9	96433077	96433184	+	intron-Distal	4.43822	3.90256	HepG2	PRPF4
chr9	96412536	96412618	+	intron-Distal	4.86886	6.41765	K562	GTF2F1
chr9	96412523	96412690	+	intron-Distal	5.05122	8.12741	HepG2	GTF2F1
chr9	96432836	96432903	+	intron-Distal	5.06435	9.10713	K562	DDX52
chr9	96362476	96362587	+	intron-Distal	3.30786	3.29355	K562	TARDBP
chr9	96412679	96412736	+	intron-Distal	4.51361	3.69238	K562	GTF2F1
chr9	96435402	96435540	+	intron-Distal	7.29278	21.47725	K562	DDX52
chr9	96426421	96426526	+	intron-Distal	4.51361	3.69238	K562	GTF2F1
chr9	96412530	96412628	+	intron-Distal	6.02674	19.33830	K562	HNRNPL
chr9	96411918	96411990	+	intron-Distal	3.98366	3.01994	HepG2	GTF2F1
chr9	96412317	96412398	+	intron-Distal	4.32709	7.63590	HepG2	AGGF1
chr9	96435309	96435373	+	intron-Distal	4.35606	4.19412	K562	EFTUD2
chr9	96433104	96433219	+	intron-Distal	4.65366	6.19628	HepG2	FAM120A
chr9	96357355	96357439	+	intron-Distal	4.45577	4.51735	HepG2	QKI
chr9	96411888	96412044	+	intron-Distal	5.18221	20.35973	HepG2	AGGF1
chr9	96411678	96411690	+	intron-Distal	6.15231	13.38324	K562	AGGF1
chr9	96386947	96387038	+	intron-Distal	4.12244	4.13641	K562	TARDBP
chr9	96340281	96340379	+	intron-Distal	3.32267	3.14895	K562	NONO
chr9	96433094	96433205	+	intron-Distal	3.80221	3.14313	K562	SAFB
chr9	96412629	96412757	+	intron-Distal	6.49163	22.31232	HepG2	HNRNPL
chr9	96386710	96386811	+	intron-Distal	4.71454	5.76606	K562	EXOSC5
chr9	96433121	96433259	+	intron-Distal	4.27739	6.95984	K562	EFTUD2
chr9	96433193	96433255	+	intron-Distal	4.59751	4.15549	K562	TBRG4
chr9	96439245	96439302	+	intron-Proximal	5.31979	6.44303	K562	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for PHF2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PHF2 is not available on ENCORE database.
39 RBPs can affect the levels of PHF2.

The Knockdown/knockout RNA-Seq assay for PHF2 is not available on ENCORE database.

39 RBPs can affect the gene expression of PHF2 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PHF2	ENSG00000197724.6	632.67510	873.77030	-0.46580	2.80260	2.26790	HepG2	AKAP1
PHF2	ENSG00000197724.6	521.58500	722.93970	-0.47100	3.08570	2.25780	HepG2	ASCC1
PHF2	ENSG00000197724.6	739.41990	889.29490	-0.26630	2.01000	1.40800	HepG2	AUH
PHF2	ENSG00000197724.6	512.52080	686.85280	-0.42240	2.63120	1.87590	HepG2	CIRBP
PHF2	ENSG00000197724.6	369.57700	597.49250	-0.69300	3.70760	2.81630	HepG2	CNOT7
PHF2	ENSG00000197724.6	333.75260	472.13290	-0.50040	2.82600	1.91450	HepG2	EIF3D
PHF2	ENSG00000197724.6	1279.30670	1021.03100	0.32520	3.81630	3.13010	HepG2	ETF1
PHF2	ENSG00000197724.6	277.20930	444.71010	-0.68190	5.46730	3.94170	HepG2	FASTKD2
PHF2	ENSG00000197724.6	558.45170	726.62870	-0.37980	2.18440	1.57650	HepG2	IGF2BP2
PHF2	ENSG00000197724.6	386.96240	582.55660	-0.59020	3.18520	1.75480	HepG2	ILF3
PHF2	ENSG00000197724.6	534.64360	771.05440	-0.52830	3.76890	3.00320	HepG2	MAGOH
PHF2	ENSG00000197724.6	323.27480	494.10590	-0.61210	2.41330	1.42860	HepG2	METAP2
PHF2	ENSG00000197724.6	550.78280	432.13690	0.34990	2.46410	1.76440	HepG2	PPIL4
PHF2	ENSG00000197724.6	480.45280	335.75430	0.51690	2.07540	1.37170	HepG2	PRPF8
PHF2	ENSG00000197724.6	968.95490	708.57320	0.45140	6.64030	5.80450	HepG2	PUM1
PHF2	ENSG00000197724.6	346.73160	516.78990	-0.57580	2.38210	1.72470	HepG2	RAVER1
PHF2	ENSG00000197724.6	549.24550	853.39270	-0.63580	7.88600	7.11560	HepG2	RBM22
PHF2	ENSG00000197724.6	1183.69630	880.98200	0.42600	2.26540	1.65460	HepG2	SF3A3
PHF2	ENSG00000197724.6	768.79790	963.87510	-0.32620	3.34180	2.80740	HepG2	SRFBP1
PHF2	ENSG00000197724.6	484.34180	774.91340	-0.67800	8.98830	8.24520	HepG2	SRSF1
PHF2	ENSG00000197724.6	482.34900	630.43540	-0.38630	3.48270	2.87920	HepG2	SRSF9
PHF2	ENSG00000197724.6	957.43150	749.52340	0.35310	3.87970	3.16550	HepG2	SUCLG1
PHF2	ENSG00000197724.6	611.13970	873.29660	-0.51500	3.14550	1.72480	HepG2	SUGP2
PHF2	ENSG00000197724.6	593.05770	470.80760	0.33290	2.11880	1.66990	HepG2	TIAL1
PHF2	ENSG00000197724.6	845.02330	652.11270	0.37380	2.84600	1.96020	HepG2	TUFM
PHF2	ENSG00000197724.6	1192.16830	696.23930	0.77580	8.88800	7.75600	HepG2	U2AF1
PHF2	ENSG00000197724.6	1098.80550	500.24100	1.13510	3.72420	2.57050	HepG2	U2AF2
PHF2	ENSG00000197724.6	556.75830	754.30950	-0.43810	4.30440	3.58350	HepG2	UTP3
PHF2	ENSG00000197724.6	384.28220	562.08010	-0.54860	5.82480	4.90580	HepG2	ZC3H8
PHF2	ENSG00000197724.6	1179.85120	1002.40730	0.23500	2.12190	1.61320	K562	AGGF1
PHF2	ENSG00000197724.6	731.88540	496.54850	0.55960	4.25640	3.10650	K562	EFTUD2
PHF2	ENSG00000197724.6	1621.94680	1195.23720	0.44030	5.80900	4.46980	K562	EIF4G2
PHF2	ENSG00000197724.6	233.97820	375.18960	-0.68120	3.68430	2.84250	K562	G3BP2
PHF2	ENSG00000197724.6	815.63830	1030.11710	-0.33680	2.40650	1.69940	K562	GRSF1
PHF2	ENSG00000197724.6	1174.30880	881.20850	0.41420	4.74050	3.56300	K562	HNRNPU
PHF2	ENSG00000197724.6	387.98490	566.80060	-0.54680	4.74520	3.89760	K562	PTBP1
PHF2	ENSG00000197724.6	494.57370	390.04910	0.34240	2.08490	1.34460	K562	SF3B4
PHF2	ENSG00000197724.6	673.92240	542.44720	0.31300	2.00050	1.31190	K562	TIA1
PHF2	ENSG00000197724.6	693.07740	532.39990	0.38040	2.39500	1.39350	K562	TRA2A
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PHF2 is not available on ENCORE database.

6 RBPs can affect the splicing of PHF2 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	PHF2	ENSG00000197724.6	chr9	+	96421792	96421882	96420426	96420518	96422473	96422842	-0.13500	0.00250	0.06317	excluded	K562	AKAP8L
SE	PHF2	ENSG00000197724.6	chr9	+	96421792	96421882	96420426	96420518	96422473	96422842	-0.32100	0.00000	0.00002	excluded	K562	PUS1
SE	PHF2	ENSG00000197724.6	chr9	+	96421792	96421882	96420426	96420518	96422473	96422842	-0.13100	0.00112	0.03715	excluded	K562	UTP18
SE	PHF2	ENSG00000197724.6	chr9	+	96421792	96421882	96420426	96420518	96422473	96422842	-0.23200	0.00005	0.00234	excluded	K562	RBM15
SE	PHF2	ENSG00000197724.6	chr9	+	96421792	96421882	96420426	96420518	96422473	96422842	-0.12500	0.00189	0.04535	excluded	K562	AGGF1
A3SS	PHF2	ENSG00000197724.6	chr9	+	96425773	96425917	96425798	96425917	96425188	96425308	0.18000	0.00001	0.00012	longer	K562	AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PHF2

General Information

Functions

Localization

Domains (AlphaFold: PHF2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PHF2 is not avaliable on ENCORE database.

37 proteins are bound to PHF2 RNA:

eCLIP assay for PHF2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PHF2 is not available on ENCORE database.

39 RBPs can affect the gene expression of PHF2 :

The Knockdown/knockout RNA-Seq assay for PHF2 is not available on ENCORE database.

6 RBPs can affect the splicing of PHF2 :

The Knockdown/knockout RNA-Seq assay for PHF2 is not avaliable on ENCORE database.