PCGF1

General Information

Gene Name       : PCGF1
Gene ID             : ENSG00000115289.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PCGF1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PCGF1ENSG00000115289.1314.5317.6516.09ENCSR000AEF
HepG2PCGF1ENSG00000115289.1317.4421.0319.23ENCSR985KAT
K562PCGF1ENSG00000115289.1323.0523.4223.23ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
PCGF1Ribo-STAMP-293TshRNAPCGF1-BGRSLV04-31,PCGF1-BGRSLV04-32NT-BGRSLV04-1,NT-BGRSLV04-2,SubmittedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PCGF1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PCGF1 RNA is bound by 5 proteins.  







eCLIP assay for PCGF1 is not avaliable on ENCORE database.





5 proteins are bound to PCGF1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr27473417574734236-CDS,intron-Distal4.032893.81597K562RBM15
chr27473307974733126-CDS,intron-Distal4.083127.22820K562YBX3
chr27473426574734332-CDS,intron-Distal,intron-Proximal4.169334.89018K562EFTUD2
chr27473425674734341-CDS,intron-Distal,intron-Proximal5.126016.12902HepG2SF3B4
chr27473230374732365-CDS,intron-Distal4.244456.53298K562SF3B4
chr27473282674732886-CDS,intron-Distal,intron-Proximal4.199005.64484HepG2PRPF8
chr27473303974733081-CDS,intron-Distal,intron-Proximal3.850155.90868HepG2PRPF8
chr27473330974733343-CDS,intron-Distal3.4097510.05371K562YBX3
chr27473418574734239-CDS,intron-Distal3.050093.29348K562YBX3
chr27473312674733172-CDS,intron-Distal3.824593.65750K562YBX3
chr27473242974732475-CDS,intron-Distal,intron-Proximal4.803684.68690HepG2PRPF8
chr27473317274733184-CDS,intron-Distal4.096654.30417K562YBX3
chr27473258574732636-intron-Distal,intron-Proximal5.351835.43043K562EFTUD2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PCGF1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PCGF1 is not available on ENCORE database.

  • 55 RBPs can affect the levels of PCGF1.  








The Knockdown/knockout RNA-Seq assay for PCGF1 is not available on ENCORE database.





55 RBPs can affect the gene expression of PCGF1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PCGF1ENSG00000115289.8247.34160106.141501.220405.659304.85160HepG2ACO1
PCGF1ENSG00000115289.8174.18710106.648100.707703.375802.53920HepG2AKAP8L
PCGF1ENSG00000115289.8190.09020106.128000.840804.906604.06790HepG2CKAP4
PCGF1ENSG00000115289.8257.67760168.655100.611402.165201.49340HepG2CNOT7
PCGF1ENSG00000115289.8295.97730155.148100.931705.302204.47240HepG2DDX6
PCGF1ENSG00000115289.8161.51730101.551100.669402.754302.07820HepG2DKC1
PCGF1ENSG00000115289.8297.27690217.039100.453802.469401.89640HepG2ETF1
PCGF1ENSG00000115289.8167.4535086.013400.961002.531001.56190HepG2FTO
PCGF1ENSG00000115289.8276.79250179.085300.628102.752801.92510HepG2LARP4
PCGF1ENSG00000115289.8288.02630154.139900.901904.186803.07990HepG2PABPC1
PCGF1ENSG00000115289.8130.53870213.36430-0.708803.161302.53050HepG2PUF60
PCGF1ENSG00000115289.8128.55940182.98230-0.509301.891401.36860HepG2RECQL
PCGF1ENSG00000115289.8370.50870136.430601.441208.937907.67210HepG2SF3A3
PCGF1ENSG00000115289.8176.56540102.310700.787102.579601.82590HepG2SNRNP70
PCGF1ENSG00000115289.8267.67050156.067300.778205.792005.04530HepG2SRSF9
PCGF1ENSG00000115289.8250.82710143.606900.804503.052402.39400HepG2U2AF1
PCGF1ENSG00000115289.8293.4039095.372701.621105.202503.82000HepG2U2AF2
PCGF1ENSG00000115289.8176.18530116.814100.592802.381101.81610HepG2UTP3
PCGF1ENSG00000115289.8193.85540133.069300.542701.846101.37460HepG2ZNF622
PCGF1ENSG00000115289.81009.23100480.657601.0701024.1551022.59220K562AGGF1
PCGF1ENSG00000115289.8363.77170259.888400.485003.470601.75730K562AKAP1
PCGF1ENSG00000115289.8743.59120528.149500.493504.001202.77390K562AKAP8
PCGF1ENSG00000115289.81053.55610500.141001.074808.071506.89900K562AKAP8L
PCGF1ENSG00000115289.8743.76490384.938900.9501011.2127010.14820K562AQR
PCGF1ENSG00000115289.8710.26160524.758700.436603.862002.76710K562ATP5C1
PCGF1ENSG00000115289.8821.39790538.219200.609807.338705.79720K562DKC1
PCGF1ENSG00000115289.8139.11710223.49850-0.684003.191401.74390K562DNAJC21
PCGF1ENSG00000115289.8335.84280240.194300.483502.795001.49820K562EWSR1
PCGF1ENSG00000115289.8370.06920259.590100.511503.660501.58240K562FUBP3
PCGF1ENSG00000115289.8166.41870286.15600-0.782005.372104.56740K562FXR1
PCGF1ENSG00000115289.8187.07020268.89770-0.523502.073801.47370K562G3BP2
PCGF1ENSG00000115289.8245.78250336.27640-0.452302.425001.42260K562HNRNPA1
PCGF1ENSG00000115289.8630.03890299.973901.070505.395403.48700K562HNRNPA2B1
PCGF1ENSG00000115289.8170.06700287.32160-0.756604.402303.66690K562HNRNPC
PCGF1ENSG00000115289.8444.63620305.713400.540303.811402.54480K562HNRNPL
PCGF1ENSG00000115289.8502.68750328.569400.613404.496103.48770K562HSPD1
PCGF1ENSG00000115289.8887.01920530.792300.740708.457906.80980K562KIF1C
PCGF1ENSG00000115289.8783.71960508.084500.625204.452702.99520K562MAK16
PCGF1ENSG00000115289.8860.94940594.619000.533904.729303.47650K562MBNL1
PCGF1ENSG00000115289.8814.48920416.783300.966504.192103.04210K562NAA15
PCGF1ENSG00000115289.8845.80730262.261601.689205.959704.34020K562PABPN1
PCGF1ENSG00000115289.8181.16070387.98960-1.098709.138607.63230K562PCBP3
PCGF1ENSG00000115289.8150.13260297.60130-0.987107.855306.52970K562POLR2G
PCGF1ENSG00000115289.8425.44260275.196800.628402.841902.00920K562PPIG
PCGF1ENSG00000115289.8730.72160311.671501.229206.544903.98500K562PPP1R8
PCGF1ENSG00000115289.8370.44080214.485700.788305.126304.10580K562PRPF8
PCGF1ENSG00000115289.8205.33650280.80880-0.451602.306301.69280K562PTBP1
PCGF1ENSG00000115289.8419.36430555.88270-0.406602.506301.73030K562PUF60
PCGF1ENSG00000115289.81512.07480496.038801.6079024.4726022.86180K562PUS1
PCGF1ENSG00000115289.81002.85820483.285101.053108.378807.37370K562RBM15
PCGF1ENSG00000115289.8661.30250322.636001.035304.516702.43460K562RBM39
PCGF1ENSG00000115289.8180.07400283.28120-0.653603.670302.39010K562NELFE
PCGF1ENSG00000115289.8256.90070425.51910-0.728004.632603.29370K562RPS3
PCGF1ENSG00000115289.8957.88370239.769701.9981014.6693011.54810K562SF1
PCGF1ENSG00000115289.8559.13440292.196100.936203.214901.77400K562SFPQ
PCGF1ENSG00000115289.8815.48200275.477801.5656010.300207.42040K562SNRNP200
PCGF1ENSG00000115289.8236.75260338.74230-0.516803.215201.57610K562SRSF9
PCGF1ENSG00000115289.8436.06060260.585500.742705.053803.48700K562U2AF1
PCGF1ENSG00000115289.8442.05950269.149000.715706.381605.16800K562U2AF2
PCGF1ENSG00000115289.81111.34340502.895001.143902.584101.35000K562UTP18
PCGF1ENSG00000115289.8670.30090324.108301.048203.709101.76080K562YTHDC2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PCGF1 is not available on ENCORE database.





5 RBPs can affect the splicing of PCGF1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSPCGF1ENSG00000115289.8chr2-7473307874733210747330787473318474733307747334160.060000.004120.02439longerK562AQR
A3SSPCGF1ENSG00000115289.8chr2-7473385874734077747338587473401174734168747342740.158000.000000.00000longerK562AQR
A5SSPCGF1ENSG00000115289.8chr2-747344747473454474734484747345447473416874734274-0.094000.000020.00108shorterK562PUS1
RIPCGF1ENSG00000115289.8chr2-7473416874734521747341687473427474734474747345210.457000.000000.00002includedK562PUS1
RIPCGF1ENSG00000115289.8chr2-7473416874734521747341687473427474734474747345210.313000.010410.08005includedK562AKAP8L
RIPCGF1ENSG00000115289.8chr2-7473416874734521747341687473427474734474747345210.371000.005140.04946includedK562RBM15
RIPCGF1ENSG00000115289.8chr2-7473416874734521747341687473427474734474747345210.444000.001930.09358includedK562SAFB
RIPCGF1ENSG00000115289.8chr2-7473416874734543747341687473427474734361747345430.095000.014380.07400includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PCGF1 is not avaliable on ENCORE database.