PAN3

General Information

Gene Name       : PAN3
Gene ID             : ENSG00000152520.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PAN3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PAN3ENSG00000152520.1318.6814.9916.84ENCSR000AEF
HepG2PAN3ENSG00000152520.134.828.226.52ENCSR985KAT
K562PAN3ENSG00000152520.136.346.806.57ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
PAN3Ribo-STAMP-293TshRNAPAN3-BGRSLV04-29,PAN3-BGRSLV04-30NT-BGRSLV04-1,NT-BGRSLV04-2,SubmittedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PAN3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PAN3 RNA is bound by 31 proteins.  







eCLIP assay for PAN3 is not avaliable on ENCORE database.





31 proteins are bound to PAN3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr132886754728867595+3'-UTR3.958543.61897HepG2HNRNPC
chr132886754728867640+3'-UTR5.9964611.16101K562ZC3H11A
chr132886899628869062+3'-UTR3.301826.19779K562ZC3H11A
chr132886899528869049+3'-UTR3.848093.33617HepG2PABPN1
chr132886755428867650+3'-UTR3.060957.18667K562FAM120A
chr132871264228712696+5'-UTR5.8180120.61095HepG2PCBP2
chr132871320328713275+5'-UTR,CDS,intron-Proximal3.162753.48042HepG2NKRF
chr132874839628748444+5'-UTR,CDS,intron-Proximal3.436383.55754HepG2U2AF2
chr132871264228712718+5'-UTR5.5303612.48233HepG2HNRNPK
chr132875202828752077+CDS,intron-Proximal3.270004.77136HepG2PPIG
chr132884124028841271+CDS3.766623.27569HepG2BCLAF1
chr132879445328794524+CDS,intron-Proximal3.245184.88483K562ZNF622
chr132883046328830511+CDS3.080343.71797HepG2BCLAF1
chr132884143728841523+CDS3.5603911.46441HepG2BCLAF1
chr132871296528713032+CDS3.619903.93112K562RBM15
chr132883558828835715+CDS,intron-Distal,intron-Proximal3.166076.04536K562KHSRP
chr132885136128851455+CDS,intron-Proximal4.908865.95026HepG2U2AF2
chr132885449928854586+CDS,intron-Proximal3.446644.94119K562SF3B4
chr132884609928846152+CDS,intron-Proximal3.499143.95921HepG2U2AF2
chr132884123328841311+CDS3.351884.14618K562ZNF622
chr132871297428713028+CDS4.261574.48935K562CSTF2T
chr132871284628712923+CDS3.531233.48042HepG2NKRF
chr132875062828750646+CDS,intron-Proximal3.156344.34695HepG2BCLAF1
chr132884146128841533+CDS3.607364.79276K562ZNF622
chr132875811128758180+intron-Distal3.885093.30440HepG2QKI
chr132876061028760726+intron-Distal4.035507.77021K562KHSRP
chr132879577828795854+intron-Distal5.026676.97910HepG2PCBP2
chr132871391928713964+intron-Distal5.5522011.30381K562HNRNPM
chr132878388728783989+intron-Distal3.073033.25203K562PTBP1
chr132871370528713747+intron-Distal4.470025.12432K562EXOSC5
chr132886086928860908+intron-Distal3.699314.33009HepG2SUGP2
chr132886112128861243+intron-Distal4.599548.21761HepG2PTBP1
chr132875283428752953+intron-Distal3.813603.49896K562KHDRBS1
chr132871366128713747+intron-Distal4.037733.52163HepG2IGF2BP1
chr132878811228788155+intron-Distal3.267573.34920HepG2HLTF
chr132883808728838216+intron-Distal3.830583.39667K562HNRNPL
chr132876621928766252+intron-Distal3.236923.25288HepG2HNRNPC
chr132886027728860348+intron-Distal3.7407314.70316HepG2SUGP2
chr132886119328861252+intron-Distal3.809243.15612HepG2PCBP2
chr132877448728774551+intron-Distal3.550835.02233K562PTBP1
chr132886111528861193+intron-Distal5.415748.60492HepG2PCBP2
chr132886005328860096+intron-Distal3.373545.35016HepG2SUGP2
chr132877443428774560+intron-Distal5.368888.13723HepG2PTBP1
chr132882178428821836+intron-Distal3.846023.16028HepG2SUGP2
chr132882837928828492+intron-Distal3.910716.41553K562KHSRP
chr132876660228766735+intron-Distal3.290026.23199K562HNRNPL
chr132880928628809361+intron-Distal3.878483.06015K562MATR3
chr132878703728787109+intron-Distal3.638953.12651K562SAFB2
chr132878688328786954+intron-Distal4.085034.51328K562SAFB2
chr132877405028774159+intron-Distal3.088578.96477K562KHSRP
chr132872282628722918+intron-Distal3.555124.01234HepG2HNRNPL
chr132881710728817180+intron-Distal4.199063.89294K562KHSRP
chr132871370528713757+intron-Distal4.602485.62460K562CSTF2T
chr132880123128801321+intron-Distal5.6781611.11632HepG2QKI
chr132879974028799851+intron-Distal4.576525.85495HepG2QKI
chr132885919928859215+intron-Distal4.074273.79098HepG2SUGP2
chr132883083128830897+intron-Distal5.324857.47823K562QKI
chr132886073328860781+intron-Distal3.166027.08259HepG2SUGP2
chr132877657828776648+intron-Distal3.131123.54383HepG2HNRNPL
chr132875798128758098+intron-Distal4.272667.68916HepG2HNRNPM
chr132877710628777155+intron-Distal3.973243.65740K562U2AF2
chr132884637028846420+intron-Distal5.3938314.03714K562PTBP1
chr132877453228774619+intron-Distal4.236415.51743K562QKI
chr132878390728783995+intron-Distal3.502274.54387HepG2PTBP1
chr132884642128846479+intron-Distal5.0723420.38222HepG2PTBP1
chr132878108628781142+intron-Distal3.296254.08528HepG2SUGP2
chr132880385928803930+intron-Distal3.599395.08575HepG2SUGP2
chr132884642028846474+intron-Distal5.8840122.70665K562PTBP1
chr132876033328760410+intron-Distal3.620294.76004K562KHSRP
chr132884637128846420+intron-Distal4.9083110.89104HepG2PTBP1
chr132882546828825586+intron-Distal4.995657.15660HepG2HNRNPM
chr132882583828825926+intron-Distal3.119864.67779HepG2SUGP2
chr132884067128840737+intron-Distal5.191559.61540K562KHSRP
chr132880097528801050+intron-Distal3.596054.57751HepG2U2AF2
chr132879579528795928+intron-Distal3.750116.46902HepG2U2AF2
chr132882557828825658+intron-Distal3.588737.51551HepG2SUGP2
chr132884503128845114+intron-Distal,intron-Proximal5.135536.98483K562RBM22
chr132871354528713578+intron-Distal4.058923.22341HepG2FAM120A
chr132871380728713869+intron-Distal3.490813.72952K562EXOSC5
chr132875233928752411+intron-Distal3.213834.30679K562KHSRP
chr132877443528774484+intron-Distal3.648563.30744K562PTBP1
chr132877685128776997+intron-Distal3.329655.78064K562KHSRP
chr132885963828859725+intron-Distal4.3094914.02890HepG2SUGP2
chr132886012728860162+intron-Distal3.336155.59320HepG2SUGP2
chr132876660028766723+intron-Distal3.812058.95102HepG2HNRNPL
chr132880095528801037+intron-Distal3.249745.57010K562KHSRP
chr132882551828825630+intron-Distal3.582105.30350K562HNRNPM
chr132885959328859638+intron-Distal3.169556.35394HepG2SUGP2
chr132871349728713545+intron-Distal3.470154.06897HepG2FAM120A
chr132881698228817088+intron-Distal5.258078.27925K562KHSRP
chr132871409428714149+intron-Distal4.303529.52875K562HNRNPM
chr132871400428714060+intron-Distal4.247673.97018HepG2HNRNPM
chr132876041728760517+intron-Distal3.356817.08481K562KHSRP
chr132886092728860968+intron-Distal4.900987.34531HepG2SUGP2
chr132881510728815177+intron-Distal3.871753.80060HepG2HNRNPC
chr132871392028713961+intron-Distal3.682383.68481HepG2HNRNPM
chr132878204528782106+intron-Distal3.359094.95320HepG2U2AF2
chr132883083428830916+intron-Distal3.863556.08171HepG2QKI
chr132878238428782467+intron-Distal3.152835.78064K562KHSRP
chr132878102828781113+intron-Distal4.843325.43236K562PTBP1
chr132876455628764634+intron-Distal4.047825.69912HepG2ILF3
chr132877595028776039+intron-Distal3.809023.39864HepG2SUGP2
chr132878114228781189+intron-Distal3.058033.35050HepG2SUGP2
chr132885435428854512+intron-Distal,intron-Proximal5.296867.17304K562KHSRP
chr132886111328861243+intron-Distal3.812068.08605K562PTBP1
chr132877899528779111+intron-Distal3.000696.62024K562KHSRP
chr132880897828809067+intron-Distal3.767293.06015K562MATR3
chr132878148328781603+intron-Distal4.708005.01910HepG2MATR3
chr132871368428713816+intron-Distal4.6334414.93636K562EIF4G2
chr132885974328859776+intron-Distal4.436304.78128HepG2SUGP2
chr132886051928860562+intron-Distal5.135159.48778HepG2SUGP2
chr132871409328714144+intron-Distal4.507025.12361K562EXOSC5
chr132872283028722945+intron-Distal4.935457.68989HepG2QKI
chr132882842528828516+intron-Distal7.0973315.39120K562ZRANB2
chr132871349728713542+intron-Distal4.483965.62460K562CSTF2T
chr132876620028766219+intron-Distal3.164733.25288HepG2HNRNPC
chr132886058028860633+intron-Distal3.329817.08259HepG2SUGP2
chr132871324028713276+intron-Proximal4.483964.48935K562CSTF2T
chr132871323128713288+intron-Proximal3.719365.80161HepG2CSTF2T
chr132871323728713290+intron-Proximal3.521416.55643K562TIA1
chr132884501928845080+intron-Proximal3.370684.25440K562TIA1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PAN3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PAN3 is not available on ENCORE database.

  • 46 RBPs can affect the levels of PAN3.  








The Knockdown/knockout RNA-Seq assay for PAN3 is not available on ENCORE database.





46 RBPs can affect the gene expression of PAN3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PAN3ENSG00000152520.9701.87190582.873200.267902.165901.56640HepG2CKAP4
PAN3ENSG00000152520.9545.44330705.08150-0.370401.841001.31540HepG2EIF4A3
PAN3ENSG00000152520.91461.064501084.318200.430106.438705.58420HepG2ETF1
PAN3ENSG00000152520.9605.84250353.074500.778907.895606.60240HepG2FUBP3
PAN3ENSG00000152520.9861.23300659.939400.384002.271101.66500HepG2G3BP1
PAN3ENSG00000152520.9908.87410668.290700.443503.281402.52200HepG2HNRNPK
PAN3ENSG00000152520.9640.53370495.255800.371002.026301.38140HepG2NSUN2
PAN3ENSG00000152520.9688.41410518.125300.409903.776602.80450HepG2PARN
PAN3ENSG00000152520.9713.29540595.852900.259401.819501.31000HepG2PCBP1
PAN3ENSG00000152520.9665.97190536.658800.311402.328101.61180HepG2PRPF4
PAN3ENSG00000152520.9765.97770606.292000.337202.718302.17480HepG2PTBP1
PAN3ENSG00000152520.9621.90060841.08430-0.435603.534002.87150HepG2PUF60
PAN3ENSG00000152520.9633.00860892.84100-0.496207.331006.46080HepG2PUM1
PAN3ENSG00000152520.91002.86990656.651800.610807.637306.67770HepG2QKI
PAN3ENSG00000152520.9978.14730613.756500.672302.578601.89720HepG2RAVER1
PAN3ENSG00000152520.9766.94910595.945200.363902.540801.89200HepG2RBM25
PAN3ENSG00000152520.9873.88020628.425300.475605.359104.53620HepG2RECQL
PAN3ENSG00000152520.91030.45830791.619700.380301.901201.33940HepG2SF3A3
PAN3ENSG00000152520.9839.71720552.887200.602805.652304.67250HepG2SF3B1
PAN3ENSG00000152520.9926.01740631.247200.552707.094106.21700HepG2SF3B4
PAN3ENSG00000152520.91464.603701023.645800.516709.773508.98860HepG2SRFBP1
PAN3ENSG00000152520.91000.68340658.877700.602808.648107.91820HepG2SRSF1
PAN3ENSG00000152520.9756.55090536.025400.497005.943205.19010HepG2SRSF9
PAN3ENSG00000152520.9747.53030944.44600-0.337303.619902.92650HepG2SUCLG1
PAN3ENSG00000152520.9830.41200592.203400.487605.046304.32640HepG2TAF15
PAN3ENSG00000152520.9807.65480544.177100.569602.618501.80450HepG2TIA1
PAN3ENSG00000152520.9771.07470592.305300.380402.336001.75440HepG2U2AF1
PAN3ENSG00000152520.9672.56140869.74060-0.370902.111501.38620HepG2UBE2L3
PAN3ENSG00000152520.91004.79010780.290800.364703.899603.24640K562AGGF1
PAN3ENSG00000152520.9993.87330811.929100.291601.962901.40990K562AKAP8L
PAN3ENSG00000152520.91413.69750999.088800.500704.590503.86890K562AQR
PAN3ENSG00000152520.91672.795701401.463800.255202.172501.31040K562CELF1
PAN3ENSG00000152520.9684.37880498.100800.458302.965802.02090K562EFTUD2
PAN3ENSG00000152520.9836.92310533.487400.649505.384303.87750K562EIF3D
PAN3ENSG00000152520.9627.48270834.38590-0.411103.097502.19640K562FIP1L1
PAN3ENSG00000152520.9845.11310640.307600.400302.079901.47840K562G3BP2
PAN3ENSG00000152520.9502.73810686.25690-0.448902.706601.78700K562HNRNPM
PAN3ENSG00000152520.9806.141001131.30270-0.488904.468203.46260K562HSPD1
PAN3ENSG00000152520.91123.91140861.655800.383202.935002.08240K562KIF1C
PAN3ENSG00000152520.9959.15240676.586600.503403.085202.14570K562NAA15
PAN3ENSG00000152520.91104.54100727.816800.601706.549205.02710K562PCBP2
PAN3ENSG00000152520.9571.88750947.13910-0.727808.298706.69910K562PPIG
PAN3ENSG00000152520.9766.72320484.705100.661504.599203.63310K562PRPF8
PAN3ENSG00000152520.91311.30540805.202900.703503.760803.14140K562PUS1
PAN3ENSG00000152520.91033.74460784.555500.397804.027603.32850K562RBM15
PAN3ENSG00000152520.9734.53480556.900300.399302.185501.33180K562SF3B1
PAN3ENSG00000152520.91175.42640779.047100.593307.395406.24910K562SRSF1
PAN3ENSG00000152520.9864.25370641.001300.431004.028703.05980K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PAN3 is not available on ENCORE database.





2 RBPs can affect the splicing of PAN3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPAN3ENSG00000152520.9chr13+288554512885551628854457288546782886651828866676-0.124000.010680.08559excludedK562AQR
MXEPAN3ENSG00000152520.9chr13+2885545128855516288621202886225928854548288546782886651828869475-0.401000.000000.000002includedHepG2FTO

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PAN3 is not avaliable on ENCORE database.