OGFOD2

General Information

Gene Name       : OGFOD2
Gene ID             : ENSG00000111325.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: OGFOD2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878OGFOD2ENSG00000111325.162.083.062.57ENCSR000AEF
HepG2OGFOD2ENSG00000111325.1614.233.598.91ENCSR985KAT
K562OGFOD2ENSG00000111325.1621.399.0915.24ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for OGFOD2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • OGFOD2 RNA is bound by 17 proteins.  







eCLIP assay for OGFOD2 is not avaliable on ENCORE database.





17 proteins are bound to OGFOD2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr12123463028123463069+3'-UTR,CDS4.247313.51664K562RBM15
chr12123463549123463578+3'-UTR,CDS,intron-Proximal3.353736.53539K562PRPF8
chr12123463526123463609+3'-UTR,CDS,intron-Proximal5.8916524.88330HepG2PRPF8
chr12123463693123463743+3'-UTR,CDS4.123683.16051HepG2PPIG
chr12123464073123464193+3'-UTR3.390587.65772K562CSTF2T
chr12123464079123464177+3'-UTR3.453804.51056HepG2LSM11
chr12123464094123464166+3'-UTR3.194703.14771K562TAF15
chr12123464103123464188+3'-UTR3.973956.46803K562UCHL5
chr12123464073123464167+3'-UTR3.090653.10435K562AKAP8L
chr12123464071123464199+3'-UTR3.667764.00430HepG2UPF1
chr12123464085123464184+3'-UTR3.213514.67846K562EWSR1
chr12123464078123464200+3'-UTR3.056735.99038K562UPF1
chr12123463914123463956+3'-UTR3.299624.25110K562CSTF2T
chr12123464108123464176+3'-UTR4.646345.54520K562GTF2F1
chr12123463544123463598+3'-UTR,CDS,intron-Proximal4.171404.23094K562TIA1
chr12123464118123464174+3'-UTR4.070676.59266K562DROSHA
chr12123463656123463758+3'-UTR,CDS4.725727.07015K562SRSF1
chr12123464133123464172+3'-UTR4.041955.34865HepG2EFTUD2
chr12123464108123464184+3'-UTR3.816673.21433HepG2TAF15
chr12123463401123463441+3'-UTR,CDS3.055643.13141K562RBM15
chr12123460361123460408+5'-UTR,CDS,intron-Distal3.437703.59112HepG2PPIG
chr12123461514123461563+5'-UTR,CDS,intron-Distal,intron-Proximal4.916114.13847K562AQR
chr12123461263123461313+5'-UTR,CDS,intron-Distal3.299454.77136HepG2PPIG
chr12123461447123461558+5'-UTR,CDS,intron-Distal,intron-Proximal3.129044.40420HepG2PPIG
chr12123461534123461639+5'-UTR,intron-Distal,intron-Proximal3.585699.11312HepG2EFTUD2
chr12123461487123461559+5'-UTR,CDS,intron-Distal,intron-Proximal4.949958.44604HepG2PRPF8
chr12123460452123460495+intron-Distal,intron-Proximal4.768385.17615K562AQR
chr12123460512123460583+intron-Distal,intron-Proximal4.183813.83943K562HNRNPK
chr12123463578123463608+intron-Proximal3.122225.47874K562PRPF8
chr12123463131123463198+intron-Proximal5.082406.04760K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for OGFOD2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for OGFOD2 is not available on ENCORE database.

  • 50 RBPs can affect the levels of OGFOD2.  








The Knockdown/knockout RNA-Seq assay for OGFOD2 is not available on ENCORE database.





50 RBPs can affect the gene expression of OGFOD2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
OGFOD2ENSG00000111325.1282.45640141.17960-0.775802.843801.91540HepG2DDX24
OGFOD2ENSG00000111325.12320.72000200.378300.678503.364402.69050HepG2DDX6
OGFOD2ENSG00000111325.1273.19640132.83640-0.859802.926401.78290HepG2AGO1
OGFOD2ENSG00000111325.12307.17330214.778200.516102.382201.73810HepG2FXR1
OGFOD2ENSG00000111325.12359.78150201.789900.834205.585204.62000HepG2HNRNPK
OGFOD2ENSG00000111325.12303.19810193.617900.646902.619901.96360HepG2HNRNPL
OGFOD2ENSG00000111325.12176.72710116.005800.607202.498201.80890HepG2IGF2BP1
OGFOD2ENSG00000111325.12436.26860214.853401.021808.536007.39880HepG2MAGOH
OGFOD2ENSG00000111325.12207.25920139.183100.574402.159501.56280HepG2SF3A3
OGFOD2ENSG00000111325.1262.07140104.24620-0.748002.023801.41520HepG2SF3B1
OGFOD2ENSG00000111325.12225.29630430.61620-0.934603.378702.84220HepG2SRFBP1
OGFOD2ENSG00000111325.12148.75000236.16880-0.666903.456302.94310HepG2SRSF1
OGFOD2ENSG00000111325.12136.84550212.28790-0.633503.165602.57140HepG2TAF15
OGFOD2ENSG00000111325.12143.4243097.743300.553101.970701.47920HepG2TRIM56
OGFOD2ENSG00000111325.1295.28450146.57720-0.621301.858501.33310HepG2U2AF1
OGFOD2ENSG00000111325.12180.17420119.170400.596302.411601.84420HepG2UTP3
OGFOD2ENSG00000111325.12193.94510135.753700.514602.386601.86770HepG2ZNF622
OGFOD2ENSG00000111325.12521.98820754.02620-0.530604.750503.88780K562AKAP8L
OGFOD2ENSG00000111325.12449.90680852.97710-0.922904.772204.03910K562AQR
OGFOD2ENSG00000111325.12446.26680283.258700.655704.025002.84920K562BCLAF1
OGFOD2ENSG00000111325.12231.43840357.93290-0.629102.473401.47890K562CNOT7
OGFOD2ENSG00000111325.12368.21170214.893900.776806.035204.39220K562CSTF2
OGFOD2ENSG00000111325.12694.38950965.19480-0.475105.042303.71930K562CELF1
OGFOD2ENSG00000111325.12772.79360397.729100.9582016.1082014.58530K562EIF2S2
OGFOD2ENSG00000111325.12269.73620407.08610-0.593804.530103.07560K562GLRX3
OGFOD2ENSG00000111325.12740.53910529.988700.482503.525502.67500K562GRSF1
OGFOD2ENSG00000111325.12186.63770321.11360-0.782803.309501.33070K562HNRNPA0
OGFOD2ENSG00000111325.12391.84430191.329201.034102.684501.67790K562IGF2BP2
OGFOD2ENSG00000111325.12305.51040194.565100.650904.208602.67000K562IGF2BP3
OGFOD2ENSG00000111325.12613.04780800.28730-0.384502.884102.03940K562KIF1C
OGFOD2ENSG00000111325.12377.25640200.974200.908408.385006.88430K562MAGOH
OGFOD2ENSG00000111325.12284.26440200.550500.503202.730001.81400K562MATR3
OGFOD2ENSG00000111325.12642.96910896.51320-0.479604.427103.22510K562MBNL1
OGFOD2ENSG00000111325.12338.21820628.38400-0.893706.935705.30290K562NAA15
OGFOD2ENSG00000111325.12620.24510858.57620-0.469103.770302.00970K562NOL12
OGFOD2ENSG00000111325.12366.14110218.558200.744303.178301.76550K562NONO
OGFOD2ENSG00000111325.12384.60660234.407300.714302.171701.44890K562PPIG
OGFOD2ENSG00000111325.12317.95880199.317400.673702.428801.58700K562PSIP1
OGFOD2ENSG00000111325.12311.95030195.266900.675804.688703.84640K562PTBP1
OGFOD2ENSG00000111325.12680.28150910.97700-0.421304.048202.73660K562PUM1
OGFOD2ENSG00000111325.12295.72890747.94440-1.3387013.2932012.14810K562PUS1
OGFOD2ENSG00000111325.12441.51200728.62880-0.722706.584805.69550K562RBM15
OGFOD2ENSG00000111325.12301.07650187.180100.685603.383702.44910K562RBM22
OGFOD2ENSG00000111325.12352.06960469.27100-0.414602.748801.93650K562SF3A3
OGFOD2ENSG00000111325.12261.64190191.438500.450601.975601.36600K562SRSF1
OGFOD2ENSG00000111325.12435.21890180.828501.2670010.046807.89400K562SRSF5
OGFOD2ENSG00000111325.12442.65980193.722701.1921012.7401011.02510K562TARDBP
OGFOD2ENSG00000111325.12481.65490186.874201.3658018.4338016.16320K562TIA1
OGFOD2ENSG00000111325.12442.48270183.439401.270209.734307.30550K562TRA2A
OGFOD2ENSG00000111325.12740.36470965.61100-0.383203.313401.76110K562UBE2L3
OGFOD2ENSG00000111325.12301.26400448.66430-0.574603.972702.97150K562WDR43
OGFOD2ENSG00000111325.12753.836301010.48860-0.422703.793602.27340K562WRN
OGFOD2ENSG00000111325.12781.12140960.97200-0.298902.056501.32450K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for OGFOD2 is not available on ENCORE database.





11 RBPs can affect the splicing of OGFOD2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEOGFOD2ENSG00000111325.12chr12+123460357123460414123459798123459930123461200123461314-0.174000.004220.09232excludedK562AKAP8L
SEOGFOD2ENSG00000111325.12chr12+1234625271234626381234614171234615171234629061234631160.409000.011500.09075includedK562AQR
SEOGFOD2ENSG00000111325.12chr12+123460357123460414123459798123459930123461200123461314-0.145000.001690.04153excludedK562AGGF1
A3SSOGFOD2ENSG00000111325.12chr12+1234629611234631161234629881234631161234614171234615170.077000.003460.02089longerK562AQR
A3SSOGFOD2ENSG00000111325.12chr12+1234629061234631161234629881234631161234614171234615170.438000.000020.00162longerHepG2U2AF1
RIOGFOD2ENSG00000111325.12chr12+1234603571234613141234603571234604141234612001234613140.602000.002050.01648includedHepG2U2AF2
RIOGFOD2ENSG00000111325.12chr12+123460357123461314123460357123460414123461200123461314-0.384000.005350.08803excludedK562SRSF1
RIOGFOD2ENSG00000111325.12chr12+1234603571234613141234603571234604141234612001234613140.392000.002090.04610includedHepG2FTO
RIOGFOD2ENSG00000111325.12chr12+1234603571234613141234603571234604141234612001234613140.321000.006040.05834includedHepG2QKI
RIOGFOD2ENSG00000111325.12chr12+1234603571234613141234603571234604141234612001234613140.710000.000020.00038includedHepG2TAF15
RIOGFOD2ENSG00000111325.12chr12+1234603571234613141234603571234604141234612001234613140.373000.003360.02533includedHepG2SF3B4
RIOGFOD2ENSG00000111325.12chr12+1234603571234613141234603571234604141234612001234613140.635000.004840.06393includedHepG2SRSF9
RIOGFOD2ENSG00000111325.12chr12+1234603571234613141234603571234604141234612001234613140.342000.000070.00060includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for OGFOD2 is not avaliable on ENCORE database.