NDRG3

General Information

Gene Name       : NDRG3
Gene ID             : ENSG00000101079.20
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: NDRG3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NDRG3ENSG00000101079.2016.7016.2716.48ENCSR000AEF
HepG2NDRG3ENSG00000101079.2028.8932.3030.59ENCSR985KAT
K562NDRG3ENSG00000101079.2023.1626.4824.82ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NDRG3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NDRG3 RNA is bound by 7 proteins.  







eCLIP assay for NDRG3 is not avaliable on ENCORE database.





7 proteins are bound to NDRG3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr203528077335280794-3'-UTR,intron-Distal,intron-Proximal3.241815.00311K562UPF1
chr203528079435280818-3'-UTR,intron-Distal3.273885.33050K562UPF1
chr203535010335350187-5'-UTR,CDS,intron-Distal,intron-Proximal5.101458.39621K562DDX3X
chr203529344735293491-CDS,intron-Distal,intron-Proximal4.223143.74511K562IGF2BP1
chr203531091435310982-CDS,intron-Distal,intron-Proximal3.784266.20926HepG2PPIG
chr203531711735317160-CDS,intron-Distal3.710285.32768K562YBX3
chr203528489835284935-CDS,intron-Distal,intron-Proximal3.517934.13746HepG2PPIG
chr203528485735284941-CDS,intron-Distal,intron-Proximal3.3501211.14388HepG2PRPF8
chr203529947035299556-intron-Distal4.483594.75655HepG2PRPF8
chr203535960735359730-intron-Distal3.297873.00914HepG2PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NDRG3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NDRG3 is not available on ENCORE database.

  • 80 RBPs can affect the levels of NDRG3.  








The Knockdown/knockout RNA-Seq assay for NDRG3 is not available on ENCORE database.





80 RBPs can affect the gene expression of NDRG3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NDRG3ENSG00000101079.161276.55680989.494300.367403.013001.89840HepG2AATF
NDRG3ENSG00000101079.162390.298001556.263000.619005.864405.12320HepG2AKAP1
NDRG3ENSG00000101079.16865.630401094.92770-0.339003.691702.81840HepG2AKAP8L
NDRG3ENSG00000101079.161224.580301637.94940-0.419603.861103.16640HepG2BOP1
NDRG3ENSG00000101079.161661.344401223.381100.441403.782902.88880HepG2CIRBP
NDRG3ENSG00000101079.16828.940701089.56830-0.394405.493604.61650HepG2CKAP4
NDRG3ENSG00000101079.16762.500201143.83270-0.585103.300002.45840HepG2CNOT7
NDRG3ENSG00000101079.161035.532601503.75770-0.538205.269204.34910HepG2CPSF6
NDRG3ENSG00000101079.16434.24890682.24770-0.651805.832704.36200HepG2CSTF2
NDRG3ENSG00000101079.16849.977701068.28380-0.329802.609201.72390HepG2DDX24
NDRG3ENSG00000101079.161880.536801490.780100.335002.301001.72530HepG2DDX3X
NDRG3ENSG00000101079.161411.129101085.957300.377802.321901.60690HepG2DDX55
NDRG3ENSG00000101079.16805.415001057.87120-0.393404.230803.37650HepG2DNAJC21
NDRG3ENSG00000101079.16794.296201130.84890-0.509705.485303.87290HepG2EIF2S2
NDRG3ENSG00000101079.16872.304901324.63070-0.602704.137703.30540HepG2EIF4B
NDRG3ENSG00000101079.161176.433201658.82850-0.495705.045603.96580HepG2EIF4G2
NDRG3ENSG00000101079.161263.475301942.14940-0.6203013.9951012.80950HepG2ETF1
NDRG3ENSG00000101079.16856.988201273.36080-0.571304.877304.00560HepG2G3BP1
NDRG3ENSG00000101079.16727.810901704.71110-1.2279019.9775018.42650HepG2GPKOW
NDRG3ENSG00000101079.16651.576701068.00630-0.712908.891407.82930HepG2HNRNPA1
NDRG3ENSG00000101079.161331.667601613.13200-0.276603.011002.04100HepG2HNRNPA2B1
NDRG3ENSG00000101079.161869.364001598.905000.225403.013002.31240HepG2HNRNPL
NDRG3ENSG00000101079.161931.392501378.664400.486303.410702.04110HepG2HSPD1
NDRG3ENSG00000101079.161390.317201205.447000.205702.385001.69730HepG2ILF2
NDRG3ENSG00000101079.16724.827601115.02180-0.621404.106002.46500HepG2ILF3
NDRG3ENSG00000101079.161530.931001989.33190-0.377902.308801.55550HepG2LARP4
NDRG3ENSG00000101079.161001.624101373.16200-0.455203.478302.74090HepG2MAGOH
NDRG3ENSG00000101079.161037.124201380.84620-0.413002.721202.09470HepG2MATR3
NDRG3ENSG00000101079.161763.160801218.291000.533206.755005.54560HepG2MSI2
NDRG3ENSG00000101079.161192.981401740.50970-0.544908.511607.19970HepG2NOL12
NDRG3ENSG00000101079.16728.109701045.30710-0.521702.487201.65450HepG2PABPC1
NDRG3ENSG00000101079.16804.328801258.69560-0.646106.267505.19300HepG2PABPC4
NDRG3ENSG00000101079.16906.352401168.09870-0.366004.294703.26830HepG2PARN
NDRG3ENSG00000101079.16736.543501246.63300-0.759205.826404.36580HepG2PCBP2
NDRG3ENSG00000101079.161122.659301304.41130-0.216501.986501.32310HepG2PRPF4
NDRG3ENSG00000101079.16469.58590837.73510-0.835108.366707.04610HepG2PRPF8
NDRG3ENSG00000101079.161248.692201763.72260-0.4982011.5568010.51880HepG2PUM1
NDRG3ENSG00000101079.16778.301901762.43430-1.1792031.4757029.39090HepG2PUM2
NDRG3ENSG00000101079.161139.194301397.91810-0.295302.803702.17520HepG2QKI
NDRG3ENSG00000101079.161657.598801203.072200.462302.135701.51010HepG2RAVER1
NDRG3ENSG00000101079.161963.590401591.357200.303102.901702.02590HepG2RBM15
NDRG3ENSG00000101079.161324.389001623.27230-0.293603.025402.49060HepG2RBM22
NDRG3ENSG00000101079.16809.514701276.89960-0.657506.592605.05530HepG2RBM27
NDRG3ENSG00000101079.16891.967901177.67960-0.400902.818202.01090HepG2RPS2
NDRG3ENSG00000101079.16854.981701202.11250-0.491603.960702.65910HepG2RPS5
NDRG3ENSG00000101079.16958.280901355.65250-0.500503.164302.44260HepG2SF3A3
NDRG3ENSG00000101079.16968.472101610.28880-0.733509.943408.67750HepG2SF3B1
NDRG3ENSG00000101079.161019.155201343.82980-0.399005.353004.57610HepG2SF3B4
NDRG3ENSG00000101079.161222.714601593.08970-0.381706.341105.34740HepG2SLBP
NDRG3ENSG00000101079.161125.616901402.63480-0.317403.853103.31810HepG2SRSF1
NDRG3ENSG00000101079.161053.054801640.45850-0.6395013.7192012.47080HepG2SRSF5
NDRG3ENSG00000101079.16941.831901141.09010-0.276902.987702.41850HepG2SRSF9
NDRG3ENSG00000101079.161136.284101591.82400-0.486408.723907.91330HepG2SSB
NDRG3ENSG00000101079.161527.883801865.65320-0.288104.180303.44440HepG2SUCLG1
NDRG3ENSG00000101079.16943.445301146.66190-0.281402.211701.75450HepG2TIAL1
NDRG3ENSG00000101079.16729.427401156.95600-0.6655012.7692011.68310HepG2TRIM56
NDRG3ENSG00000101079.161297.102701623.18480-0.323502.889101.99380HepG2TUFM
NDRG3ENSG00000101079.161589.786601287.662100.304001.977601.43710HepG2U2AF1
NDRG3ENSG00000101079.162296.40970836.976201.456006.139604.60590HepG2U2AF2
NDRG3ENSG00000101079.16897.84340638.614200.491403.800202.91120HepG2UCHL5
NDRG3ENSG00000101079.161453.678701202.255000.273903.138802.40430HepG2UPF1
NDRG3ENSG00000101079.161600.449201160.732300.463308.039807.10480HepG2UTP3
NDRG3ENSG00000101079.161667.524801287.296000.373306.201005.25890HepG2ZC3H8
NDRG3ENSG00000101079.161668.182001322.252500.335205.598304.89050HepG2ZNF622
NDRG3ENSG00000101079.16842.684801709.33770-1.0204017.7818016.46150K562AQR
NDRG3ENSG00000101079.161149.671301512.99700-0.396204.119103.16150K562CPSF6
NDRG3ENSG00000101079.162035.060201676.888500.279203.314802.34630K562DKC1
NDRG3ENSG00000101079.16602.45390962.81800-0.676406.885005.39300K562EFTUD2
NDRG3ENSG00000101079.16767.078401320.92640-0.7841016.0661014.54620K562EIF2S2
NDRG3ENSG00000101079.16773.24860958.38200-0.309702.661101.53750K562EIF4B
NDRG3ENSG00000101079.161190.78820918.212900.374902.553001.47710K562FKBP4
NDRG3ENSG00000101079.16979.64180734.276200.415804.032802.37870K562FUS
NDRG3ENSG00000101079.16920.153501106.73270-0.266402.256101.69970K562FXR1
NDRG3ENSG00000101079.16927.167101444.55560-0.639707.732406.40060K562GPKOW
NDRG3ENSG00000101079.161382.003301760.22670-0.349003.322602.49730K562GRSF1
NDRG3ENSG00000101079.16726.473101057.91310-0.542205.605904.78550K562HNRNPC
NDRG3ENSG00000101079.162045.482001596.855800.357103.593602.36790K562HNRNPL
NDRG3ENSG00000101079.16956.102101318.41770-0.463603.442102.49920K562MAGOH
NDRG3ENSG00000101079.16803.214701173.15430-0.546504.303203.07870K562PCBP2
NDRG3ENSG00000101079.161044.567701401.09210-0.423603.191902.29840K562PCBP3
NDRG3ENSG00000101079.16751.350501074.64740-0.516305.755804.60310K562POLR2G
NDRG3ENSG00000101079.16533.36520936.93510-0.812809.147207.78150K562PRPF8
NDRG3ENSG00000101079.161074.603201280.88890-0.253301.892001.32390K562PTBP1
NDRG3ENSG00000101079.161942.389902309.68950-0.249902.048001.34540K562PUF60
NDRG3ENSG00000101079.161920.168302407.08910-0.326104.395503.17960K562PUM2
NDRG3ENSG00000101079.162370.021701545.443600.616806.298605.51790K562PUS1
NDRG3ENSG00000101079.161821.646101505.823400.274602.811602.21450K562RBM15
NDRG3ENSG00000101079.16855.423201228.48600-0.522205.317304.10820K562RBM22
NDRG3ENSG00000101079.161225.164801506.99190-0.298704.006602.90210K562SRPK2
NDRG3ENSG00000101079.16929.985201255.64350-0.433104.362503.47830K562SRSF1
NDRG3ENSG00000101079.16775.865601270.91110-0.712008.521607.19360K562TARDBP
NDRG3ENSG00000101079.161004.466901225.90630-0.287402.287701.55040K562TIA1
NDRG3ENSG00000101079.161244.807601616.52310-0.377002.695501.51090K562UTP3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NDRG3 is not available on ENCORE database.





4 RBPs can affect the splicing of NDRG3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENDRG3ENSG00000101079.16chr20-353353743533541035317081353171873535008135350186-0.061000.000110.08522excludedK562TROVE2
SENDRG3ENSG00000101079.16chr20-353353743533541035317081353171873535008135350186-0.137000.000170.00303excludedHepG2U2AF2
SENDRG3ENSG00000101079.16chr20-353353743533541035317081353171873535008135350186-0.082000.006610.08957excludedK562U2AF2
A3SSNDRG3ENSG00000101079.16chr20-3529363835293731352936383529370435294691352947950.086000.000000.00000longerK562AQR
MXENDRG3ENSG00000101079.16chr20-3529974335299800353092183530930535294691352947953531092035310981-0.120000.001190.029582includedHepG2DDX55

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NDRG3 is not avaliable on ENCORE database.