CBY1

General Information

Gene Name       : CBY1
Gene ID             : ENSG00000100211.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CBY1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CBY1ENSG00000100211.108.238.878.55ENCSR000AEF
HepG2CBY1ENSG00000100211.1015.7123.0219.37ENCSR985KAT
K562CBY1ENSG00000100211.108.819.659.23ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CBY1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CBY1 RNA is bound by 2 proteins.  







eCLIP assay for CBY1 is not avaliable on ENCORE database.





2 proteins are bound to CBY1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr223906928239069371+3'-UTR4.644195.25389K562UPF1
chr223906965939069767+3'-UTR3.860463.07786HepG2UPF1
chr223906941639069493+3'-UTR4.095203.95192HepG2UPF1
chr223905267339052767+5'-UTR,intron-Proximal3.583464.77429HepG2NCBP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CBY1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CBY1 is not available on ENCORE database.

  • 55 RBPs can affect the levels of CBY1.  








The Knockdown/knockout RNA-Seq assay for CBY1 is not available on ENCORE database.





55 RBPs can affect the gene expression of CBY1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CBY1ENSG00000100211.6527.08160397.431700.407201.872701.42520HepG2AKAP1
CBY1ENSG00000100211.6167.72150301.32850-0.845305.483504.67620HepG2BOP1
CBY1ENSG00000100211.6312.83980200.596800.641002.579701.84190HepG2CNOT7
CBY1ENSG00000100211.6366.20470255.763200.517704.190003.18800HepG2DDX19B
CBY1ENSG00000100211.6394.21510233.384600.756205.519104.59590HepG2DDX21
CBY1ENSG00000100211.6206.01190326.97060-0.666402.657202.05190HepG2DDX6
CBY1ENSG00000100211.6335.21040217.951100.621003.098502.12620HepG2EEF2
CBY1ENSG00000100211.6304.54410462.82480-0.603805.377804.27530HepG2EIF4G1
CBY1ENSG00000100211.6295.43680443.36130-0.585603.900702.94340HepG2EIF4G2
CBY1ENSG00000100211.6102.71170212.93760-1.051805.464203.72870HepG2FKBP4
CBY1ENSG00000100211.6235.70430325.21310-0.464401.865601.31360HepG2G3BP1
CBY1ENSG00000100211.6277.45160401.73670-0.534002.611401.91420HepG2HNRNPF
CBY1ENSG00000100211.6204.14370329.12030-0.689002.920302.20210HepG2HNRNPK
CBY1ENSG00000100211.6336.71410427.37470-0.344002.358101.72960HepG2HNRNPL
CBY1ENSG00000100211.6209.77620299.24470-0.512502.263301.68790HepG2HNRNPLL
CBY1ENSG00000100211.6124.72370246.90240-0.985206.286703.91270HepG2CCAR2
CBY1ENSG00000100211.6481.06000350.613800.456202.440801.82410HepG2MAGOH
CBY1ENSG00000100211.6144.17780352.60090-1.290207.142206.16370HepG2MATR3
CBY1ENSG00000100211.6361.86830254.230800.509202.754101.94780HepG2MSI2
CBY1ENSG00000100211.6161.11900265.34840-0.719803.458702.62130HepG2NSUN2
CBY1ENSG00000100211.6259.96450444.07760-0.772506.522805.65970HepG2PUF60
CBY1ENSG00000100211.6389.65250281.686000.468003.391802.72750HepG2PUS1
CBY1ENSG00000100211.6286.50420381.16240-0.411802.223001.65290HepG2QKI
CBY1ENSG00000100211.6171.45920269.22030-0.650902.157401.52950HepG2RAVER1
CBY1ENSG00000100211.6250.73430345.93490-0.464302.439801.80290HepG2RBM25
CBY1ENSG00000100211.6266.70300364.81410-0.451902.684202.07580HepG2RECQL
CBY1ENSG00000100211.6264.80660432.64580-0.708204.326403.50190HepG2RPLP0
CBY1ENSG00000100211.6165.90420264.44920-0.672602.808501.85760HepG2RPS10
CBY1ENSG00000100211.6133.47510195.10040-0.547602.147801.44760HepG2RRP9
CBY1ENSG00000100211.6384.57960257.845400.576704.716503.91370HepG2SAFB2
CBY1ENSG00000100211.6328.98050425.78060-0.372102.532701.85730HepG2SLBP
CBY1ENSG00000100211.6374.91050300.683800.318201.871801.32540HepG2SMN1
CBY1ENSG00000100211.6587.66330484.795200.277501.904901.46590HepG2SRFBP1
CBY1ENSG00000100211.6317.16340438.44990-0.467203.439602.75500HepG2SRSF5
CBY1ENSG00000100211.6279.50560394.66460-0.497802.147501.52560HepG2SRSF7
CBY1ENSG00000100211.6167.73660254.66890-0.602402.325301.69840HepG2SUPV3L1
CBY1ENSG00000100211.6206.79370291.71010-0.496302.284301.61600HepG2TARDBP
CBY1ENSG00000100211.699.34610268.71400-1.4355010.943309.67160HepG2U2AF1
CBY1ENSG00000100211.6367.44340250.694800.551502.092601.45410HepG2XRN2
CBY1ENSG00000100211.6373.30020298.471100.322601.917601.43970HepG2ZNF622
CBY1ENSG00000100211.6160.82240268.96700-0.742003.669402.15780HepG2ZRANB2
CBY1ENSG00000100211.6141.45600248.60230-0.813505.001504.27660K562AGGF1
CBY1ENSG00000100211.6153.58370258.68010-0.752104.228103.41740K562AKAP8L
CBY1ENSG00000100211.6155.28130258.24620-0.733903.363802.72970K562AQR
CBY1ENSG00000100211.674.89570131.42560-0.811302.667201.81130K562BOP1
CBY1ENSG00000100211.690.31350147.00790-0.702902.562201.68680K562EFTUD2
CBY1ENSG00000100211.690.05270137.22080-0.607702.157401.61100K562FXR1
CBY1ENSG00000100211.6191.77980265.90820-0.471502.080301.41810K562GRSF1
CBY1ENSG00000100211.6126.27160184.49520-0.547101.933401.42310K562HNRNPC
CBY1ENSG00000100211.6289.50280206.958200.484102.273701.54810K562HSPD1
CBY1ENSG00000100211.6243.28450365.48370-0.587203.907701.56120K562CCAR2
CBY1ENSG00000100211.665.34680143.05610-1.130404.561803.59880K562PRPF8
CBY1ENSG00000100211.6216.99350346.17810-0.673903.978403.00420K562PUF60
CBY1ENSG00000100211.689.64520256.55310-1.5170011.3007010.25180K562PUS1
CBY1ENSG00000100211.6139.71970249.96120-0.839205.205704.41560K562RBM15
CBY1ENSG00000100211.664.42590131.66790-1.031204.472103.37530K562SF3B4
CBY1ENSG00000100211.695.18210145.66220-0.613902.236801.49730K562SYNCRIP
CBY1ENSG00000100211.673.64380126.73970-0.783202.895602.07440K562U2AF2
CBY1ENSG00000100211.6209.33540290.89540-0.474702.320501.54180K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CBY1 is not available on ENCORE database.





8 RBPs can affect the splicing of CBY1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECBY1ENSG00000100211.6chr22+390615503906169039052655390527553906402139064137-0.187000.000030.00416excludedHepG2RBM22
SECBY1ENSG00000100211.6chr22+390670743906719339066888390669943906916339069851-0.114000.003270.06937excludedHepG2HNRNPK
SECBY1ENSG00000100211.6chr22+390615503906169039052655390527553906402139064137-0.207000.004410.04806excludedHepG2U2AF2
SECBY1ENSG00000100211.6chr22+390670743906719339066888390669943906916339069851-0.075000.011790.09251excludedK562AQR
SECBY1ENSG00000100211.6chr22+390615503906169039052655390527553906402139064137-0.139000.001540.09189excludedHepG2DDX3X
SECBY1ENSG00000100211.6chr22+3905296039053148390526803905275539064021390641370.149000.004860.08661includedHepG2SRSF1
SECBY1ENSG00000100211.6chr22+390615503906169039052655390527553906402139064137-0.150000.003190.07507excludedHepG2SF3A3
MXECBY1ENSG00000100211.6chr22+39052960390531483906155039061690390526803905275539064021390641370.279000.005180.079561includedHepG2SRSF1
MXECBY1ENSG00000100211.6chr22+39052960390531483906155039061690390526803905275539064021390641370.563000.004840.078801includedK562SUPV3L1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CBY1 is not avaliable on ENCORE database.