C15orf38-AP3S2

General Information

Gene Name       : C15orf38-AP3S2
Gene ID             : ENSG00000250021.7
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C15orf38-AP3S2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878C15orf38-AP3S2ENSG00000250021.75.835.335.58ENCSR000AEF
HepG2C15orf38-AP3S2ENSG00000250021.717.1915.2416.21ENCSR985KAT
K562C15orf38-AP3S2ENSG00000250021.73.963.873.92ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C15orf38-AP3S2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C15orf38-AP3S2 RNA is bound by 13 proteins.  







eCLIP assay for C15orf38-AP3S2 is not avaliable on ENCORE database.





13 proteins are bound to C15orf38-AP3S2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr159037809490378132-3'-UTR,intron-Distal,intron-Proximal3.850123.34655HepG2AKAP1
chr159037783990377884-3'-UTR,intron-Distal3.975904.94392K562AKAP1
chr159037835390378438-3'-UTR,intron-Distal4.6142711.31667HepG2UPF1
chr159037848990378593-3'-UTR,intron-Distal,intron-Proximal5.7177613.82898HepG2UPF1
chr159037771790377773-3'-UTR,intron-Distal4.0919313.61678K562UPF1
chr159037808690378136-3'-UTR,intron-Distal,intron-Proximal5.052965.93974HepG2UPF1
chr159037778290377825-3'-UTR,intron-Distal4.4773812.41920K562UPF1
chr159037765190377707-3'-UTR,intron-Distal4.364418.73365HepG2UPF1
chr159037854090378612-3'-UTR,intron-Distal,intron-Proximal3.741585.03349HepG2AKAP1
chr159037764290377717-3'-UTR,intron-Distal4.4138522.86957K562UPF1
chr159037774590377802-3'-UTR,intron-Distal4.534065.97422HepG2AKAP1
chr159037782990377889-3'-UTR,intron-Distal5.2426215.83369K562UPF1
chr159037854990378629-3'-UTR,intron-Distal,intron-Proximal3.6293411.04498K562UPF1
chr159037760990377700-3'-UTR,intron-Distal3.029683.75675K562IGF2BP2
chr159037847390378524-3'-UTR,intron-Distal5.6860111.61633K562UPF1
chr159037835890378445-3'-UTR,intron-Distal5.3285910.25462HepG2AKAP1
chr159037833690378405-3'-UTR,intron-Distal3.3371411.13067K562UPF1
chr159037824290378325-3'-UTR,intron-Distal4.274718.75828HepG2AKAP1
chr159037808690378136-3'-UTR,intron-Distal,intron-Proximal3.4449815.59037K562UPF1
chr159037817790378311-3'-UTR,intron-Distal,intron-Proximal6.4454640.61271K562UPF1
chr159037788990377957-3'-UTR,intron-Distal3.8492111.88509K562UPF1
chr159037820990378332-3'-UTR,intron-Distal,intron-Proximal6.0194415.42180HepG2UPF1
chr159041475090414778-3'-UTR,5'-UTR,CDS,intron-Distal3.828133.02250K562YBX3
chr159043175090431781-5'-UTR,CDS,intron-Distal,intron-Proximal4.063613.89948K562YBX3
chr159038087790380955-3'-UTR,CDS,intron-Distal,intron-Proximal4.7244311.62373K562UPF1
chr159043234690432445-CDS,intron-Distal,intron-Proximal3.013686.47001K562SF3B4
chr159043227990432374-5'-UTR,CDS,intron-Distal,intron-Proximal3.334644.99842HepG2PPIG
chr159043228090432370-5'-UTR,CDS,intron-Distal,intron-Proximal3.140387.65028K562YBX3
chr159040669190406795-intron-Distal3.656314.81844HepG2SUGP2
chr159040670690406801-intron-Distal4.294034.40847HepG2PTBP1
chr159041976290419833-intron-Distal3.997385.93532K562PTBP1
chr159044258190442645-intron-Distal4.150294.20997HepG2UPF1
chr159043700590437063-intron-Distal3.127143.18246K562PRPF8
chr159041015790410221-intron-Distal4.119673.71028HepG2NKRF
chr159040617290406257-intron-Distal4.640753.96879HepG2MATR3
chr159040529590405361-intron-Distal3.138503.10640HepG2SUGP2
chr159040670690406808-intron-Distal3.557714.72029K562MATR3
chr159041976190419824-intron-Distal3.688584.48652HepG2PTBP1
chr159042308590423143-intron-Distal4.304664.95918HepG2ILF3
chr159043706690437128-CDS,intron-Distal3.324335.50267HepG2PRPF8
chr159040493690405019-intron-Distal3.644495.56133HepG2SUGP2
chr159042033790420437-intron-Distal4.070303.09122HepG2PTBP1
chr159044429590444393-3'-UTR,intron-Distal4.902704.17937HepG2PCBP2
chr159040674590406808-intron-Distal4.893085.43236K562PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C15orf38-AP3S2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C15orf38-AP3S2 is not available on ENCORE database.

  • 66 RBPs can affect the levels of C15orf38-AP3S2.  








The Knockdown/knockout RNA-Seq assay for C15orf38-AP3S2 is not available on ENCORE database.





66 RBPs can affect the gene expression of C15orf38-AP3S2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C15orf38-AP3S2ENSG00000250021.3458.79690304.928800.589302.982902.00190HepG2ABCF1
C15orf38-AP3S2ENSG00000250021.31211.70060679.236300.834908.294407.42780HepG2AKAP1
C15orf38-AP3S2ENSG00000250021.3506.22590391.041200.372402.696501.93870HepG2AKAP8L
C15orf38-AP3S2ENSG00000250021.3121.42800251.57610-1.050906.782305.89340HepG2BOP1
C15orf38-AP3S2ENSG00000250021.3695.14330389.139400.8369014.0808012.82170HepG2CKAP4
C15orf38-AP3S2ENSG00000250021.3406.67100230.957800.816105.881604.91230HepG2CPSF6
C15orf38-AP3S2ENSG00000250021.3439.53260302.285900.540002.259601.63830HepG2DDX21
C15orf38-AP3S2ENSG00000250021.3846.45860650.672000.379402.258101.68790HepG2DDX3X
C15orf38-AP3S2ENSG00000250021.3393.50830265.144400.569503.459102.33910HepG2DDX5
C15orf38-AP3S2ENSG00000250021.3508.16860372.335700.448603.480102.73340HepG2DKC1
C15orf38-AP3S2ENSG00000250021.3424.44440298.320300.508602.573401.68160HepG2EEF2
C15orf38-AP3S2ENSG00000250021.3363.57760248.658600.548002.912401.77620HepG2EFTUD2
C15orf38-AP3S2ENSG00000250021.3404.90850537.32440-0.408202.095901.57220HepG2EIF2S1
C15orf38-AP3S2ENSG00000250021.3164.05900242.14790-0.561702.212501.39480HepG2EIF3D
C15orf38-AP3S2ENSG00000250021.3354.90250578.13820-0.704004.121003.28980HepG2EIF4B
C15orf38-AP3S2ENSG00000250021.3499.48080380.335400.393102.395201.61930HepG2EWSR1
C15orf38-AP3S2ENSG00000250021.3193.65090339.33380-0.809205.539904.09150HepG2GNB2L1
C15orf38-AP3S2ENSG00000250021.3359.79680562.70700-0.645204.809003.90930HepG2HNRNPK
C15orf38-AP3S2ENSG00000250021.3387.39090516.93470-0.416203.206502.48490HepG2HNRNPL
C15orf38-AP3S2ENSG00000250021.3334.27570568.21530-0.765404.990003.60750HepG2KHSRP
C15orf38-AP3S2ENSG00000250021.3199.85260297.27640-0.572902.058801.30900HepG2PABPC1
C15orf38-AP3S2ENSG00000250021.3354.64240559.91990-0.658907.180006.27660HepG2PCBP1
C15orf38-AP3S2ENSG00000250021.3176.54770291.66160-0.724203.226301.58300HepG2PNPT1
C15orf38-AP3S2ENSG00000250021.3713.02510569.768000.323502.737302.19200HepG2PTBP1
C15orf38-AP3S2ENSG00000250021.31115.80030537.236501.0543019.0986017.71840HepG2PUF60
C15orf38-AP3S2ENSG00000250021.3364.82410570.33790-0.644607.474506.59710HepG2PUM1
C15orf38-AP3S2ENSG00000250021.3343.82180569.89790-0.729006.910805.86920HepG2PUM2
C15orf38-AP3S2ENSG00000250021.3633.60450396.392200.676608.891307.89120HepG2PUS1
C15orf38-AP3S2ENSG00000250021.3664.08280531.131000.322202.030901.56870HepG2RBM22
C15orf38-AP3S2ENSG00000250021.3363.18760560.00100-0.624705.218604.31950HepG2RBM25
C15orf38-AP3S2ENSG00000250021.3203.60690307.63490-0.595402.737401.43430HepG2SART3
C15orf38-AP3S2ENSG00000250021.3676.25330336.177601.008202.478201.84060HepG2SF3A3
C15orf38-AP3S2ENSG00000250021.3372.68230515.20340-0.467203.034902.30440HepG2SLBP
C15orf38-AP3S2ENSG00000250021.3803.12180619.141900.375203.556803.03710HepG2SRSF1
C15orf38-AP3S2ENSG00000250021.3156.30890266.09750-0.767603.397902.27710HepG2SRSF3
C15orf38-AP3S2ENSG00000250021.3266.46450503.72290-0.9187012.0978011.08740HepG2SRSF9
C15orf38-AP3S2ENSG00000250021.31007.78090520.789600.9523020.7182019.59730HepG2SSB
C15orf38-AP3S2ENSG00000250021.3778.91330603.272300.368604.097803.36660HepG2SUCLG1
C15orf38-AP3S2ENSG00000250021.3384.03360556.56690-0.535304.428403.74480HepG2TAF15
C15orf38-AP3S2ENSG00000250021.3118.13700243.53900-1.043706.471805.42450HepG2TARDBP
C15orf38-AP3S2ENSG00000250021.3491.29700274.922100.837503.089301.96530HepG2TBRG4
C15orf38-AP3S2ENSG00000250021.3119.09500243.14490-1.029706.570605.14930HepG2TFIP11
C15orf38-AP3S2ENSG00000250021.3359.81460511.34760-0.507103.693702.73480HepG2TIA1
C15orf38-AP3S2ENSG00000250021.3196.58610368.38210-0.906004.164903.50120HepG2TRIM56
C15orf38-AP3S2ENSG00000250021.3349.18610524.91880-0.588104.317203.19710HepG2TUFM
C15orf38-AP3S2ENSG00000250021.3579.92860332.128500.804004.360403.08250HepG2UPF2
C15orf38-AP3S2ENSG00000250021.3490.74320357.121600.458502.044301.41350HepG2XRN2
C15orf38-AP3S2ENSG00000250021.3211.58660341.58810-0.691002.653101.99430HepG2ZC3H8
C15orf38-AP3S2ENSG00000250021.3502.31900327.895100.615306.764406.00760HepG2ZNF622
C15orf38-AP3S2ENSG00000250021.3176.03100324.17460-0.880905.301503.44340HepG2ZRANB2
C15orf38-AP3S2ENSG00000250021.30.0000026.57070-99999.999992.174201.31120K562CELF1
C15orf38-AP3S2ENSG00000250021.3188.6255095.258800.985502.937801.61610K562EEF2
C15orf38-AP3S2ENSG00000250021.349.917502.795704.1582011.200409.58370K562EIF3G
C15orf38-AP3S2ENSG00000250021.30.0000044.21770-99999.9999912.9263011.15500K562G3BP2
C15orf38-AP3S2ENSG00000250021.315.4526092.24880-2.577704.296902.49300K562GEMIN5
C15orf38-AP3S2ENSG00000250021.318.37580134.32780-2.8699013.3616011.68140K562GRSF1
C15orf38-AP3S2ENSG00000250021.315.5049090.78730-2.549804.067702.42740K562NONO
C15orf38-AP3S2ENSG00000250021.318.6285087.20430-2.226906.841703.93740K562PES1
C15orf38-AP3S2ENSG00000250021.35.4054049.46960-3.194108.874305.72100K562QKI
C15orf38-AP3S2ENSG00000250021.377.402100.0000099999.999905.815504.98230K562RBM15
C15orf38-AP3S2ENSG00000250021.340.10880127.39830-1.667408.084105.43400K562RBM17
C15orf38-AP3S2ENSG00000250021.30.0000041.93030-99999.9999912.340809.33470K562RBM25
C15orf38-AP3S2ENSG00000250021.319.5714076.58260-1.968304.895302.81690K562SERBP1
C15orf38-AP3S2ENSG00000250021.357.960202.865904.3379013.3219010.10090K562SLTM
C15orf38-AP3S2ENSG00000250021.32.7475089.45770-5.0250014.8715011.10200K562SRP68
C15orf38-AP3S2ENSG00000250021.319.0727086.62000-2.183202.908601.86470K562SUPV3L1
C15orf38-AP3S2ENSG00000250021.30.0000043.40410-99999.9999912.102508.52760K562TAF15
C15orf38-AP3S2ENSG00000250021.36.8001046.08140-2.760605.969103.60750K562TBRG4
C15orf38-AP3S2ENSG00000250021.328.1977079.00170-1.486304.531602.40150K562TFIP11
C15orf38-AP3S2ENSG00000250021.30.0000042.85020-99999.9999912.347509.82140K562U2AF1
C15orf38-AP3S2ENSG00000250021.326.9605091.71120-1.766304.717903.34800K562UCHL5
C15orf38-AP3S2ENSG00000250021.310.4589093.44220-3.159307.378405.13230K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C15orf38-AP3S2 is not available on ENCORE database.





6 RBPs can affect the splicing of C15orf38-AP3S2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEC15orf38-AP3S2ENSG00000250021.3chr15-904205379042065690414706904147789043175290431864-0.101000.006780.09627excludedK562SRSF1
SEC15orf38-AP3S2ENSG00000250021.3chr15-904205379042065690414706904147789043175290431864-0.071000.000160.01151excludedHepG2PTBP1
SEC15orf38-AP3S2ENSG00000250021.3chr15-9042053790420656904147069041477890431752904318640.102000.001080.04540includedHepG2MATR3
SEC15orf38-AP3S2ENSG00000250021.3chr15-9042053790420656904147069041477890431752904318640.234000.000000.00005includedK562HNRNPL
SEC15orf38-AP3S2ENSG00000250021.3chr15-904205379042065690414706904147789043175290431864-0.084000.000000.00000excludedHepG2SRSF1
SEC15orf38-AP3S2ENSG00000250021.3chr15-904205379042065690414706904147789043175290431864-0.105000.002210.06854excludedK562TARDBP
SEC15orf38-AP3S2ENSG00000250021.3chr15-9042149690421532904147069041477890431752904318640.171000.000830.03328includedHepG2HNRNPC
MXEC15orf38-AP3S2ENSG00000250021.3chr15-90420537904206569042149690421532904147069041477890431752904318640.701000.002040.065151includedHepG2PTBP1
MXEC15orf38-AP3S2ENSG00000250021.3chr15-90420537904206569042149690421532904147069041477890431752904318640.824000.000010.000271includedHepG2SRSF1
MXEC15orf38-AP3S2ENSG00000250021.3chr15-90420537904206569042149690421532904147069041477890431752904318640.381000.000050.003541includedHepG2HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for C15orf38-AP3S2 is not avaliable on ENCORE database.