ATP9B

General Information

Gene Name : ATP9B
Gene ID : ENSG00000166377.20
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ATP9B)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ATP9B	ENSG00000166377.20	6.98	7.21	7.10	ENCSR000AEF
HepG2	ATP9B	ENSG00000166377.20	8.02	7.47	7.74	ENCSR985KAT
K562	ATP9B	ENSG00000166377.20	5.11	4.76	4.94	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ATP9B is not avaliable on ENCORE database.

Proteins bound to RNA

ATP9B RNA is bound by 28 proteins.

eCLIP assay for ATP9B is not avaliable on ENCORE database.

28 proteins are bound to ATP9B RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr18	77013570	77013711	+	3'-UTR,intron-Distal,intron-Proximal	3.49854	4.76898	K562	CSTF2T
chr18	77133935	77134075	+	3'-UTR,CDS	4.40339	3.49905	HepG2	PPIG
chr18	76856491	76856592	+	3'-UTR,CDS,intron-Distal	3.65763	5.56491	HepG2	BCLAF1
chr18	76856499	76856591	+	3'-UTR,CDS,intron-Distal	4.34153	5.18972	HepG2	GRWD1
chr18	76829356	76829521	+	5'-UTR,CDS	4.20851	4.57620	HepG2	PRPF4
chr18	76829395	76829514	+	5'-UTR,CDS	4.00933	6.88952	HepG2	NCBP2
chr18	77096625	77096716	+	5'-UTR,CDS,intron-Proximal	3.03178	4.09741	HepG2	PPIG
chr18	76903801	76903860	+	CDS,intron-Proximal	4.53378	4.37348	HepG2	BCLAF1
chr18	76886295	76886381	+	CDS,intron-Proximal	3.34584	3.36945	K562	ZNF622
chr18	76873240	76873355	+	CDS,intron-Distal,intron-Proximal	3.39189	6.74947	HepG2	BCLAF1
chr18	76856599	76856659	+	CDS,intron-Distal,intron-Proximal	3.53911	5.56491	HepG2	BCLAF1
chr18	77097400	77097481	+	CDS,intron-Proximal	3.92273	5.62208	HepG2	PRPF8
chr18	76953186	76953236	+	CDS	4.24130	3.89826	HepG2	BCLAF1
chr18	76856591	76856653	+	CDS,intron-Distal,intron-Proximal	3.25846	3.79741	HepG2	GRWD1
chr18	76856588	76856653	+	CDS,intron-Distal,intron-Proximal	4.35210	4.44454	K562	UCHL5
chr18	76870358	76870438	+	CDS,intron-Distal	3.27278	3.80299	HepG2	GRWD1
chr18	76870352	76870462	+	CDS,intron-Distal,intron-Proximal	4.24130	11.11870	HepG2	BCLAF1
chr18	76854424	76854479	+	intron-Distal	4.09875	4.02846	K562	HNRNPM
chr18	76905287	76905338	+	intron-Distal	6.46796	18.42983	HepG2	RBFOX2
chr18	76905409	76905474	+	intron-Distal	4.60627	4.70044	HepG2	DROSHA
chr18	76896083	76896143	+	intron-Distal	4.07107	3.50357	HepG2	QKI
chr18	77128239	77128317	+	intron-Distal	3.02366	3.65070	K562	SLTM
chr18	77118864	77119019	+	intron-Distal	4.17044	4.00200	K562	EIF4G2
chr18	76906513	76906535	+	intron-Distal	4.18343	3.37829	HepG2	DROSHA
chr18	77120412	77120512	+	intron-Distal	6.86045	59.15052	HepG2	QKI
chr18	76960709	76960778	+	intron-Distal	4.63349	6.19429	HepG2	CSTF2T
chr18	76905146	76905198	+	intron-Distal	6.98481	26.77708	HepG2	RBFOX2
chr18	76935784	76935870	+	intron-Distal	4.81932	10.62109	HepG2	HNRNPL
chr18	76997306	76997349	+	intron-Distal	4.39095	3.92947	HepG2	DDX59
chr18	76905198	76905247	+	intron-Distal	6.62406	19.24847	HepG2	RBFOX2
chr18	76906491	76906522	+	intron-Distal	5.86549	13.99723	HepG2	RBFOX2
chr18	76970597	76970676	+	intron-Distal	4.98574	6.19745	HepG2	HNRNPM
chr18	77106085	77106212	+	intron-Distal	3.71532	3.76460	HepG2	HNRNPL
chr18	77126175	77126272	+	intron-Distal	4.72275	11.17517	K562	SLTM
chr18	76906363	76906393	+	intron-Distal	6.95901	26.50129	HepG2	RBFOX2
chr18	76960697	76960782	+	intron-Distal	4.21006	4.13881	HepG2	PRPF4
chr18	76906602	76906660	+	intron-Distal	4.74118	5.17678	K562	EIF4G2
chr18	76906320	76906363	+	intron-Distal	7.05442	28.42430	HepG2	RBFOX2
chr18	77126787	77126831	+	intron-Distal	3.54398	3.90201	K562	SLTM
chr18	76905722	76905767	+	intron-Distal	6.53554	20.06479	HepG2	RBFOX2
chr18	76906492	76906535	+	intron-Distal	5.63344	4.65802	K562	DROSHA
chr18	76906062	76906089	+	intron-Distal	5.39647	4.14061	K562	DROSHA
chr18	76906417	76906467	+	intron-Distal	5.84511	6.19827	HepG2	DDX6
chr18	76906570	76906666	+	intron-Distal	4.39129	6.91279	K562	RBFOX2
chr18	77032160	77032258	+	intron-Distal	3.97753	3.04224	HepG2	SUGP2
chr18	76905038	76905097	+	intron-Distal	4.44389	4.14162	K562	RBFOX2
chr18	76935564	76935653	+	intron-Distal	5.35293	8.04631	HepG2	HNRNPL
chr18	77106719	77106788	+	intron-Distal	4.10168	3.97888	HepG2	HNRNPL
chr18	76906577	76906709	+	intron-Distal	4.25452	4.70168	K562	CSTF2T
chr18	76960698	76960798	+	intron-Distal	5.17312	4.95161	K562	GTF2F1
chr18	76960695	76960771	+	intron-Distal	4.87405	7.75663	K562	CSTF2T
chr18	76905290	76905340	+	intron-Distal	4.62712	6.33175	HepG2	DROSHA
chr18	76905435	76905478	+	intron-Distal	4.73637	6.81444	K562	RBFOX2
chr18	77028742	77028852	+	intron-Distal	4.04103	3.45817	K562	MATR3
chr18	76935779	76935886	+	intron-Distal	4.93169	8.16758	K562	HNRNPL
chr18	76905152	76905198	+	intron-Distal	5.04372	6.81444	K562	RBFOX2
chr18	76905430	76905480	+	intron-Distal	5.39992	17.74353	HepG2	RBFOX2
chr18	76906569	76906631	+	intron-Distal	5.93692	9.61270	HepG2	RBFOX2
chr18	76970375	76970517	+	intron-Distal	4.31125	8.71921	HepG2	HNRNPM
chr18	76905069	76905156	+	intron-Distal	4.60956	12.62474	HepG2	DROSHA
chr18	76905729	76905779	+	intron-Distal	4.60169	4.19739	K562	EIF4G2
chr18	76905198	76905243	+	intron-Distal	4.25743	4.50422	HepG2	DROSHA
chr18	76960696	76960814	+	intron-Distal	5.53676	17.87200	HepG2	FAM120A
chr18	77125351	77125400	+	intron-Distal	4.28990	3.36882	K562	SLTM
chr18	76906492	76906513	+	intron-Distal	4.18343	3.37829	HepG2	DROSHA
chr18	77078750	77078820	+	intron-Distal	3.86362	3.47315	HepG2	CSTF2
chr18	76906334	76906460	+	intron-Distal	4.80143	3.44348	K562	DDX6
chr18	76893446	76893651	+	intron-Distal	3.13128	4.03313	K562	HNRNPL
chr18	76905052	76905146	+	intron-Distal	6.34926	29.31574	HepG2	RBFOX2
chr18	76941466	76941566	+	intron-Distal	4.30277	4.17759	HepG2	QKI
chr18	76905058	76905160	+	intron-Distal	3.13161	3.49516	HepG2	CSTF2T
chr18	76994526	76994600	+	intron-Distal	3.92210	3.65854	HepG2	RBFOX2
chr18	76906278	76906295	+	intron-Distal	6.45608	18.70301	HepG2	RBFOX2
chr18	77071604	77071669	+	intron-Distal	3.19848	3.35103	HepG2	QKI
chr18	77029300	77029357	+	intron-Distal	3.90560	3.29248	HepG2	SUGP2
chr18	76903880	76903973	+	intron-Distal,intron-Proximal	3.90657	3.89294	K562	KHSRP
chr18	76906410	76906478	+	intron-Distal	7.16302	31.77664	HepG2	RBFOX2
chr18	77029631	77029711	+	intron-Distal	4.52675	5.04879	HepG2	SUGP2
chr18	76905198	76905246	+	intron-Distal	4.33718	3.06537	K562	RBFOX2
chr18	77126181	77126241	+	intron-Distal	4.13001	3.55983	HepG2	HLTF
chr18	76994600	76994766	+	intron-Distal	5.25108	9.07158	HepG2	RBFOX2
chr18	77028878	77028991	+	intron-Distal	4.30483	4.18579	K562	MATR3
chr18	76905097	76905152	+	intron-Distal	5.61840	11.74926	K562	RBFOX2
chr18	76935664	76935763	+	intron-Distal	4.52790	8.43681	HepG2	HNRNPL
chr18	77125911	77126011	+	intron-Distal	4.40053	4.42734	K562	UCHL5
chr18	76836730	76836780	+	intron-Distal	3.95925	3.27829	HepG2	MATR3
chr18	76906251	76906278	+	intron-Distal	6.42521	18.15633	HepG2	RBFOX2
chr18	76905292	76905336	+	intron-Distal	5.83371	5.17878	K562	DROSHA
chr18	76906349	76906399	+	intron-Distal	4.25658	3.59983	HepG2	DROSHA
chr18	77096030	77096089	+	intron-Distal	3.75793	5.84244	HepG2	HNRNPK
chr18	76905723	76905768	+	intron-Distal	4.44385	5.18638	HepG2	DROSHA
chr18	77023098	77023195	+	intron-Distal	3.57840	3.02234	K562	KHSRP
chr18	77124736	77124788	+	intron-Distal	3.08950	3.07152	HepG2	HLTF
chr18	76905723	76905764	+	intron-Distal	5.45421	4.14061	K562	DROSHA
chr18	76970676	76970818	+	intron-Distal	5.26367	9.68377	HepG2	HNRNPM
chr18	76906522	76906535	+	intron-Distal	5.86549	13.99723	HepG2	RBFOX2
chr18	76935541	76935651	+	intron-Distal	4.83118	11.36206	K562	AGGF1
chr18	76906572	76906638	+	intron-Distal	5.53285	13.51956	HepG2	DROSHA
chr18	77120512	77120626	+	intron-Distal	5.60243	49.68160	HepG2	QKI
chr18	76848397	76848564	+	intron-Distal	3.29226	3.93901	K562	KHSRP
chr18	76906638	76906724	+	intron-Distal	5.35346	10.49064	HepG2	DROSHA
chr18	77111804	77111978	+	intron-Distal	4.21263	3.63902	HepG2	CSTF2T
chr18	76935624	76935779	+	intron-Distal	4.34123	9.59054	K562	HNRNPL
chr18	76906414	76906469	+	intron-Distal	4.75011	7.47946	HepG2	DROSHA
chr18	76960694	76960840	+	intron-Distal	4.68580	4.46951	K562	FAM120A
chr18	76905162	76905198	+	intron-Distal	4.73567	6.47941	HepG2	DROSHA
chr18	77124906	77124954	+	intron-Distal	4.24014	4.09073	K562	SLTM
chr18	77125653	77125825	+	intron-Distal	4.73594	6.13536	HepG2	SRSF9
chr18	77120407	77120594	+	intron-Distal	6.29918	28.59948	K562	QKI
chr18	76906418	76906467	+	intron-Distal	4.80196	4.67055	K562	EIF4G2
chr18	76905090	76905190	+	intron-Distal	5.29891	4.89579	K562	DDX6
chr18	76935483	76935589	+	intron-Distal	4.82483	8.39842	K562	HNRNPL
chr18	77128047	77128138	+	intron-Distal	3.85866	5.66214	K562	SLTM
chr18	77126181	77126297	+	intron-Distal	4.03785	8.27303	HepG2	SLTM
chr18	76905057	76905163	+	intron-Distal	5.97398	12.18278	K562	DROSHA
chr18	77096004	77096030	+	intron-Distal	4.01055	4.07750	HepG2	HNRNPK
chr18	76905052	76905177	+	intron-Distal	4.39595	11.54379	K562	EIF4G2
chr18	76905190	76905232	+	intron-Distal	5.72373	4.65802	K562	DROSHA
chr18	76906068	76906089	+	intron-Distal	4.70072	12.11288	HepG2	RBFOX2
chr18	76906342	76906386	+	intron-Distal	4.02885	3.71802	K562	RBFOX2
chr18	76906413	76906464	+	intron-Distal	4.46754	4.59504	K562	RBFOX2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for ATP9B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ATP9B is not available on ENCORE database.
30 RBPs can affect the levels of ATP9B.

The Knockdown/knockout RNA-Seq assay for ATP9B is not available on ENCORE database.

30 RBPs can affect the gene expression of ATP9B :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ATP9B	ENSG00000166377.15	220.08620	132.12590	0.73610	2.58210	1.84390	HepG2	CNOT7
ATP9B	ENSG00000166377.15	252.81310	176.85550	0.51540	2.33220	1.70270	HepG2	DDX21
ATP9B	ENSG00000166377.15	381.57910	270.08820	0.49850	2.42250	1.83310	HepG2	DDX3X
ATP9B	ENSG00000166377.15	159.65480	232.01810	-0.53930	1.93320	1.40830	HepG2	DDX6
ATP9B	ENSG00000166377.15	344.54970	246.48000	0.48310	2.15410	1.58710	HepG2	EIF4A3
ATP9B	ENSG00000166377.15	546.59240	444.06400	0.29960	2.12890	1.58760	HepG2	ETF1
ATP9B	ENSG00000166377.15	337.59390	230.69840	0.54920	2.71530	2.05570	HepG2	G3BP1
ATP9B	ENSG00000166377.15	227.45820	138.39200	0.71670	3.44750	2.73590	HepG2	HNRNPA1
ATP9B	ENSG00000166377.15	221.15110	153.93120	0.52260	1.96170	1.36680	HepG2	HNRNPC
ATP9B	ENSG00000166377.15	292.90630	204.98610	0.51480	3.04440	2.33970	HepG2	HNRNPL
ATP9B	ENSG00000166377.15	228.95020	152.91380	0.58220	3.18670	2.53970	HepG2	HNRNPU
ATP9B	ENSG00000166377.15	329.90360	234.49810	0.49240	2.24190	1.62680	HepG2	IGF2BP2
ATP9B	ENSG00000166377.15	283.64950	187.71890	0.59540	3.02870	1.75790	HepG2	LIN28B
ATP9B	ENSG00000166377.15	282.07320	217.71990	0.37350	1.77240	1.31490	HepG2	PTBP1
ATP9B	ENSG00000166377.15	297.86190	226.07790	0.39770	1.96930	1.45190	HepG2	PUM1
ATP9B	ENSG00000166377.15	349.60170	249.53880	0.48630	3.31450	2.65570	HepG2	PUS1
ATP9B	ENSG00000166377.15	417.62980	235.82280	0.82440	7.04670	6.11610	HepG2	QKI
ATP9B	ENSG00000166377.15	318.48750	242.31180	0.39430	1.79770	1.34160	HepG2	NELFE
ATP9B	ENSG00000166377.15	291.88390	208.83640	0.48290	2.13150	1.50680	HepG2	SF3B1
ATP9B	ENSG00000166377.15	312.67350	226.69710	0.46380	2.39510	1.83940	HepG2	SF3B4
ATP9B	ENSG00000166377.15	314.41080	419.22990	-0.41510	2.49400	2.00960	HepG2	SRFBP1
ATP9B	ENSG00000166377.15	346.82950	236.61350	0.55160	3.37190	2.86310	HepG2	SRSF1
ATP9B	ENSG00000166377.15	300.70430	210.27430	0.51600	2.90900	2.26770	HepG2	SRSF5
ATP9B	ENSG00000166377.15	498.87950	364.01610	0.45460	3.93460	3.34670	HepG2	SSB
ATP9B	ENSG00000166377.15	358.30980	239.15250	0.58320	4.13500	3.40170	HepG2	SUCLG1
ATP9B	ENSG00000166377.15	250.55190	337.05030	-0.42790	2.02050	1.46040	K562	AKAP8L
ATP9B	ENSG00000166377.15	276.24730	362.68230	-0.39270	2.17220	1.40720	K562	DKC1
ATP9B	ENSG00000166377.15	240.84360	340.17120	-0.49820	2.41780	1.70850	K562	GRSF1
ATP9B	ENSG00000166377.15	284.90790	400.70400	-0.49200	3.08340	2.11470	K562	MBNL1
ATP9B	ENSG00000166377.15	231.34660	325.68610	-0.49340	2.67430	2.09010	K562	RBM15
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ATP9B is not available on ENCORE database.

1 RBPs can affect the splicing of ATP9B :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP	Bound by RBP
SE	ATP9B	ENSG00000166377.15	chr18	+	76936812	76936907			76914503	76914555	76953182	76953263	-0.32500	0.00424	0.09303	excluded	HepG2	SF3A3

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ATP9B

General Information

Functions

Localization

Domains (AlphaFold: ATP9B)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ATP9B is not avaliable on ENCORE database.

28 proteins are bound to ATP9B RNA:

eCLIP assay for ATP9B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ATP9B is not available on ENCORE database.

30 RBPs can affect the gene expression of ATP9B :

The Knockdown/knockout RNA-Seq assay for ATP9B is not available on ENCORE database.

1 RBPs can affect the splicing of ATP9B :

The Knockdown/knockout RNA-Seq assay for ATP9B is not avaliable on ENCORE database.