ZNF44

General Information

Gene Name       : ZNF44
Gene ID             : ENSG00000197857.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ZNF44)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ZNF44ENSG00000197857.135.014.054.53ENCSR000AEF
HepG2ZNF44ENSG00000197857.136.4810.068.27ENCSR985KAT
K562ZNF44ENSG00000197857.133.963.583.77ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ZNF44 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ZNF44 RNA is bound by 19 proteins.  







eCLIP assay for ZNF44 is not avaliable on ENCORE database.





19 proteins are bound to ZNF44 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr191238676112386880-3'-UTR,CDS,intron-Distal,intron-Proximal3.950553.86479HepG2PRPF8
chr191238677012386875-3'-UTR,CDS,intron-Distal,intron-Proximal3.607784.51003HepG2PPIG
chr191240550212405586-5'-UTR,CDS,intron-Distal3.031784.09741HepG2PPIG
chr191240545212405600-5'-UTR,CDS,intron-Distal4.067006.91053HepG2SRSF1
chr191240551412405613-5'-UTR,intron-Distal,intron-Proximal3.394626.13609HepG2NCBP2
chr191238472612384874-CDS,intron-Distal4.346597.49468HepG2BCLAF1
chr191238354212383606-CDS,intron-Distal3.730924.09885HepG2BCLAF1
chr191238464012384747-CDS,intron-Distal4.548274.44649HepG2HLTF
chr191239167812391798-intron-Distal4.3388210.39396K562KHSRP
chr191240500312405095-intron-Distal3.053205.38180HepG2FAM120A
chr191240498512405093-intron-Distal3.771194.86842HepG2PCBP2
chr191239168312391752-intron-Distal4.949097.23521HepG2HNRNPM
chr191239462512394680-intron-Distal4.641366.59893HepG2ILF3
chr191239198812392009-intron-Distal4.058413.62366HepG2HNRNPM
chr191239280812392876-intron-Distal3.318453.35050HepG2SUGP2
chr191239438612394423-intron-Distal5.7622412.29377HepG2ILF3
chr191240531312405376-intron-Distal3.582744.81289HepG2RBM22
chr191239194912391984-intron-Distal3.724053.04224HepG2SUGP2
chr191240182312401911-intron-Distal,intron-Proximal3.154683.31157HepG2KHSRP
chr191239280112392885-intron-Distal4.4534513.41842HepG2HNRNPM
chr191239152912391625-intron-Distal3.289834.56724K562KHSRP
chr191239182512391864-intron-Distal4.772665.37406HepG2HNRNPM
chr191240499212405077-intron-Distal4.938477.57617HepG2GTF2F1
chr191239246912392540-intron-Distal4.026144.94813HepG2HNRNPM
chr191239442312394450-intron-Distal5.6889810.87432HepG2ILF3
chr191240465512404741-intron-Distal3.941273.69388HepG2XPO5
chr191240494212405063-intron-Distal4.679905.84281K562GTF2F1
chr191238251412382620-intron-Distal,intron-Proximal3.249494.08957HepG2CSTF2
chr191239249112392543-intron-Distal4.102243.62238HepG2MATR3
chr191239259612392652-intron-Distal4.077696.66631HepG2HNRNPM
chr191239448712394527-intron-Distal4.518374.95918HepG2ILF3
chr191238821012388364-intron-Distal4.710037.39957K562KHSRP
chr191240494912405078-intron-Distal3.460555.45104HepG2NKRF
chr191239168912391754-intron-Distal3.422024.33009HepG2SUGP2
chr191240497712405095-intron-Distal5.9969618.46585HepG2PRPF4
chr191239191612392026-intron-Distal3.757946.25598K562KHSRP
chr191239162512391678-intron-Distal3.882123.89294K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ZNF44 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ZNF44 is not available on ENCORE database.

  • 61 RBPs can affect the levels of ZNF44.  








The Knockdown/knockout RNA-Seq assay for ZNF44 is not available on ENCORE database.





61 RBPs can affect the gene expression of ZNF44 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ZNF44ENSG00000197857.9370.05860288.224200.360502.082701.40390HepG2AKAP8L
ZNF44ENSG00000197857.9388.48390264.723900.553302.971501.99660HepG2BCCIP
ZNF44ENSG00000197857.9440.63870210.712601.064207.421006.20200HepG2CIRBP
ZNF44ENSG00000197857.9339.55880216.333800.650302.723001.96500HepG2CNOT7
ZNF44ENSG00000197857.9544.79880428.124800.347602.319901.72230HepG2CELF1
ZNF44ENSG00000197857.9366.18900256.794200.511902.125001.56970HepG2DDX3X
ZNF44ENSG00000197857.9351.48890260.261200.433402.017901.34640HepG2DDX55
ZNF44ENSG00000197857.9372.20640212.062900.811505.325804.51990HepG2EIF2S1
ZNF44ENSG00000197857.9235.29870144.407800.704203.340602.35240HepG2EIF3D
ZNF44ENSG00000197857.9448.35100234.398500.935603.447902.73550HepG2EIF4A3
ZNF44ENSG00000197857.9354.92010228.135700.637502.868902.16910HepG2EIF4B
ZNF44ENSG00000197857.9679.18770454.158600.580506.256905.08990HepG2EIF4G1
ZNF44ENSG00000197857.9691.57400487.042500.505705.258704.47670HepG2ETF1
ZNF44ENSG00000197857.9359.07000219.333200.711003.406102.67130HepG2G3BP1
ZNF44ENSG00000197857.9369.90130232.758700.668204.001502.92210HepG2G3BP2
ZNF44ENSG00000197857.9326.22560228.928100.510902.477401.51830HepG2GNB2L1
ZNF44ENSG00000197857.9265.61560183.945300.530002.356101.75580HepG2HNRNPA1
ZNF44ENSG00000197857.9629.79590423.084600.573804.520403.37540HepG2HNRNPA2B1
ZNF44ENSG00000197857.9409.34270221.931000.883106.764805.70910HepG2HNRNPK
ZNF44ENSG00000197857.9557.75890419.388300.411303.596802.83400HepG2HNRNPL
ZNF44ENSG00000197857.9144.77300203.25550-0.489502.113801.57580HepG2HNRNPU
ZNF44ENSG00000197857.9382.35800222.972400.778004.245303.42480HepG2IGF2BP2
ZNF44ENSG00000197857.9371.65670224.225500.728903.111002.03910HepG2KHSRP
ZNF44ENSG00000197857.9480.29150236.446801.022309.068807.89460HepG2MAGOH
ZNF44ENSG00000197857.9366.49980237.791900.624003.207102.53220HepG2MATR3
ZNF44ENSG00000197857.9441.92360243.410800.860306.343805.40040HepG2NCBP2
ZNF44ENSG00000197857.9327.66630216.854200.595403.142202.37530HepG2PABPC4
ZNF44ENSG00000197857.9330.93390200.864800.720204.422103.42640HepG2PRPF8
ZNF44ENSG00000197857.9380.23010269.299700.497603.151702.57540HepG2PTBP1
ZNF44ENSG00000197857.9417.71610292.193000.515504.180203.45010HepG2PUS1
ZNF44ENSG00000197857.9368.09970219.602200.745104.127102.82600HepG2RCC2
ZNF44ENSG00000197857.9438.06260299.708200.547504.009903.38040HepG2NELFE
ZNF44ENSG00000197857.9390.31970283.233000.462602.415901.77050HepG2RPLP0
ZNF44ENSG00000197857.9705.33110310.947301.1815011.6972010.24940HepG2SF3A3
ZNF44ENSG00000197857.9360.94560280.383300.364301.895901.39100HepG2SF3B4
ZNF44ENSG00000197857.9326.16190417.80520-0.357202.396001.73690HepG2SLBP
ZNF44ENSG00000197857.9449.79710292.656400.620005.038504.45000HepG2SRSF1
ZNF44ENSG00000197857.9812.05150399.220301.0243016.6086015.57220HepG2SSB
ZNF44ENSG00000197857.9393.89840489.31820-0.312902.199701.63370HepG2SUCLG1
ZNF44ENSG00000197857.9321.28400241.709200.410502.114701.38200HepG2TIA1
ZNF44ENSG00000197857.9270.04870197.488100.451402.154001.70180HepG2TIAL1
ZNF44ENSG00000197857.9356.04210214.776600.729104.387503.60480HepG2U2AF1
ZNF44ENSG00000197857.9350.88550153.084901.196607.859706.58280HepG2UCHL5
ZNF44ENSG00000197857.9358.38990275.761500.378002.280701.63650HepG2UPF1
ZNF44ENSG00000197857.9482.29050237.340601.022807.565505.84790HepG2UPF2
ZNF44ENSG00000197857.9388.41080266.238700.544803.774203.09190HepG2UTP3
ZNF44ENSG00000197857.9302.58600194.513400.637402.999201.85280HepG2XPO5
ZNF44ENSG00000197857.9401.51250255.067900.654504.196603.31070HepG2XRN2
ZNF44ENSG00000197857.9245.81610177.401600.470502.391801.76130HepG2ZC3H8
ZNF44ENSG00000197857.9379.58200303.286500.323601.936901.45730HepG2ZNF622
ZNF44ENSG00000197857.9150.34580219.09160-0.543202.398401.78950K562AKAP8L
ZNF44ENSG00000197857.9278.15970155.242100.841306.142305.13430K562EIF2S2
ZNF44ENSG00000197857.9208.94110133.761100.643302.985202.13480K562EIF4A3
ZNF44ENSG00000197857.9192.69760139.105600.470101.821801.31030K562FXR1
ZNF44ENSG00000197857.9191.17260120.354100.667501.884001.31300K562G3BP2
ZNF44ENSG00000197857.9288.12360206.870000.477902.054201.39670K562GRSF1
ZNF44ENSG00000197857.9171.6899097.757000.812403.466802.80890K562HNRNPC
ZNF44ENSG00000197857.9224.30610156.080900.523102.083901.39040K562HSPD1
ZNF44ENSG00000197857.9186.02000260.49040-0.485802.090201.31580K562MBNL1
ZNF44ENSG00000197857.9125.56920181.68950-0.533002.231401.62500K562PTBP1
ZNF44ENSG00000197857.9646.69560330.964500.966309.945808.37640K562PUF60
ZNF44ENSG00000197857.9104.26730217.31920-1.059505.902005.14620K562PUS1
ZNF44ENSG00000197857.9152.17650211.71130-0.476402.012501.49190K562RBM15
ZNF44ENSG00000197857.9119.99540180.25420-0.587102.307001.65830K562TARDBP
ZNF44ENSG00000197857.9204.20750116.583700.808603.733102.42190K562U2AF1
ZNF44ENSG00000197857.9237.57930120.431200.980106.835505.58040K562U2AF2
ZNF44ENSG00000197857.9293.29090160.401300.870507.032305.94600K562UPF1
ZNF44ENSG00000197857.9196.30880137.249000.516202.154701.38360K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ZNF44 is not available on ENCORE database.





3 RBPs can affect the splicing of ZNF44 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEZNF44ENSG00000197857.9chr19-1240404612404190123867701238689712405506124056950.530000.000160.02041includedHepG2PRPF8
SEZNF44ENSG00000197857.9chr19-1240404612404190123867701238689712405506124056950.329000.004690.09131includedHepG2HNRNPK
SEZNF44ENSG00000197857.9chr19-1240404612404190123867701238689712405506124056950.524000.001840.08203includedHepG2PTBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ZNF44 is not avaliable on ENCORE database.