ZNF23

General Information

Gene Name       : ZNF23
Gene ID             : ENSG00000167377.18
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ZNF23)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ZNF23ENSG00000167377.188.467.698.08ENCSR000AEF
HepG2ZNF23ENSG00000167377.186.2810.888.58ENCSR985KAT
K562ZNF23ENSG00000167377.188.928.418.66ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ZNF23 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ZNF23 RNA is bound by 2 proteins.  







eCLIP assay for ZNF23 is not avaliable on ENCORE database.





2 proteins are bound to ZNF23 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr167148716971487245-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.956173.41051HepG2SRSF1
chr167148254371482602-3'-UTR,CDS,intron-Distal4.220483.04123K562LIN28B
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ZNF23 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ZNF23 is not available on ENCORE database.

  • 55 RBPs can affect the levels of ZNF23.  








The Knockdown/knockout RNA-Seq assay for ZNF23 is not available on ENCORE database.





55 RBPs can affect the gene expression of ZNF23 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ZNF23ENSG00000167377.13636.18980370.903500.778303.512202.65810HepG2CALR
ZNF23ENSG00000167377.13485.59750392.948200.305302.071301.48390HepG2CKAP4
ZNF23ENSG00000167377.13709.77320486.730800.544102.623901.87970HepG2CNOT7
ZNF23ENSG00000167377.13621.05340328.083100.920609.576508.37200HepG2CPSF6
ZNF23ENSG00000167377.13510.05690628.25320-0.300702.070801.41610HepG2DAZAP1
ZNF23ENSG00000167377.13394.28330261.854900.590402.863501.44700HepG2DDX28
ZNF23ENSG00000167377.13550.09990338.894900.698805.123804.33160HepG2EIF2S1
ZNF23ENSG00000167377.13611.20300374.527500.706505.324004.43710HepG2EIF4A3
ZNF23ENSG00000167377.13992.05170638.220500.636309.809108.78890HepG2ETF1
ZNF23ENSG00000167377.13359.76570211.306500.767605.191604.12560HepG2FUBP3
ZNF23ENSG00000167377.13590.26560354.911800.733806.158005.14660HepG2HNRNPK
ZNF23ENSG00000167377.13546.18350377.987900.530903.266302.55400HepG2MAGOH
ZNF23ENSG00000167377.13513.18360389.064900.399401.971901.43250HepG2NCBP2
ZNF23ENSG00000167377.13593.96910378.221700.651107.637806.70900HepG2PCBP1
ZNF23ENSG00000167377.13537.30700416.789500.366302.362901.77780HepG2QKI
ZNF23ENSG00000167377.13622.27270472.792000.396203.103502.20000HepG2RBM15
ZNF23ENSG00000167377.13575.95760351.289400.713205.979204.97520HepG2SF3B1
ZNF23ENSG00000167377.13543.35060390.872400.475101.959601.30540HepG2SNRNP70
ZNF23ENSG00000167377.13968.38600602.500600.6845012.0844011.23370HepG2SRFBP1
ZNF23ENSG00000167377.13486.61170340.259600.516004.777204.08920HepG2SRSF9
ZNF23ENSG00000167377.13534.07290667.83030-0.322402.255701.68360HepG2SUCLG1
ZNF23ENSG00000167377.13559.32120375.951800.573005.432304.69160HepG2TAF15
ZNF23ENSG00000167377.13458.35450345.412300.408002.588901.77810HepG2TIA1
ZNF23ENSG00000167377.13233.02350361.52090-0.633604.455703.85240HepG2TIAL1
ZNF23ENSG00000167377.13338.89420445.64010-0.395002.848502.14080HepG2UPF1
ZNF23ENSG00000167377.13592.33160430.249700.461104.017303.31490HepG2UTP3
ZNF23ENSG00000167377.13243.60940357.90330-0.555003.704403.06540K562AGGF1
ZNF23ENSG00000167377.13231.99950372.40980-0.682804.658903.80400K562AKAP8L
ZNF23ENSG00000167377.131549.68210553.612601.4849022.1282020.65030K562AQR
ZNF23ENSG00000167377.13293.56440390.73860-0.412502.517701.64850K562ATP5C1
ZNF23ENSG00000167377.13466.94910323.759600.528203.647302.74820K562CPSF6
ZNF23ENSG00000167377.131037.10420850.891200.285402.384701.48020K562CELF1
ZNF23ENSG00000167377.13614.59560492.880100.318301.916601.35550K562DDX47
ZNF23ENSG00000167377.13388.39230268.576500.532103.112602.14120K562EFTUD2
ZNF23ENSG00000167377.13455.07400201.812001.1730013.3317011.47030K562EIF4A3
ZNF23ENSG00000167377.13384.22750209.876900.872308.245607.27100K562FXR1
ZNF23ENSG00000167377.13397.43220220.661300.848805.501704.42830K562G3BP2
ZNF23ENSG00000167377.13744.42020567.527700.391302.611501.87570K562GRSF1
ZNF23ENSG00000167377.13325.34430231.627200.490102.459701.89310K562HNRNPC
ZNF23ENSG00000167377.13406.11850287.485900.498302.651401.44740K562HNRNPK
ZNF23ENSG00000167377.13197.58390297.61470-0.591002.749401.82330K562HNRNPM
ZNF23ENSG00000167377.13175.26020287.98120-0.716503.567802.34470K562IGF2BP2
ZNF23ENSG00000167377.13257.52860395.23650-0.618004.198103.15460K562KIF1C
ZNF23ENSG00000167377.13397.15600263.955700.589302.841401.89220K562KRR1
ZNF23ENSG00000167377.13488.91910302.544800.692306.220804.93940K562MAGOH
ZNF23ENSG00000167377.13249.39540378.32510-0.601202.672601.62010K562MAK16
ZNF23ENSG00000167377.13491.82420345.440100.509604.285803.29760K562MTPAP
ZNF23ENSG00000167377.13399.74150269.169500.570503.496802.39970K562PCBP2
ZNF23ENSG00000167377.13415.74730266.119400.643503.830002.85160K562PCBP3
ZNF23ENSG00000167377.13332.93330204.128500.705704.784803.73020K562POLR2G
ZNF23ENSG00000167377.13481.62820261.355800.881807.235606.02520K562PRPF8
ZNF23ENSG00000167377.131222.14530755.230800.694308.734507.27300K562PUF60
ZNF23ENSG00000167377.13993.75220803.138600.307102.756501.69240K562PUM1
ZNF23ENSG00000167377.13251.55990369.36220-0.554103.370202.77970K562PUS1
ZNF23ENSG00000167377.13193.28370359.85980-0.896707.712206.75290K562RBM15
ZNF23ENSG00000167377.13432.39350296.565100.543903.378702.15610K562NELFE
ZNF23ENSG00000167377.13501.01100378.711100.403602.816601.99550K562SF3A3
ZNF23ENSG00000167377.13453.16880293.996100.624203.501202.40430K562SF3B1
ZNF23ENSG00000167377.13330.76830229.643600.526303.410202.45720K562SF3B4
ZNF23ENSG00000167377.13370.01210253.054200.548002.817501.79170K562SUPV3L1
ZNF23ENSG00000167377.13493.88750362.121700.447603.473202.53340K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ZNF23 is not available on ENCORE database.





4 RBPs can affect the splicing of ZNF23 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEZNF23ENSG00000167377.13chr16-714844967148461871481512714837887148714571487253-0.397000.000160.02424excludedK562FMR1
SEZNF23ENSG00000167377.13chr16-714844967148461871481512714837887148714571487253-0.359000.000400.07843excludedK562METAP2
SEZNF23ENSG00000167377.13chr16-7148449671484618714815127148378871487145714872530.636000.000050.00148includedK562HNRNPC
A3SSZNF23ENSG00000167377.13chr16-7148794471488164714879447148812171490666714907310.458000.016110.07948longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ZNF23 is not avaliable on ENCORE database.