XPNPEP1

General Information

Gene Name       : XPNPEP1
Gene ID             : ENSG00000108039.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: XPNPEP1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878XPNPEP1ENSG00000108039.1732.0341.4136.72ENCSR000AEF
HepG2XPNPEP1ENSG00000108039.1734.0326.8730.45ENCSR985KAT
K562XPNPEP1ENSG00000108039.1745.2144.7544.98ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for XPNPEP1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • XPNPEP1 RNA is bound by 7 proteins.  







eCLIP assay for XPNPEP1 is not avaliable on ENCORE database.





7 proteins are bound to XPNPEP1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr10111629709111629767-CDS,intron-Distal,intron-Proximal3.461593.27569HepG2BCLAF1
chr10111648273111648381-CDS,intron-Distal,intron-Proximal3.224263.01994K562BUD13
chr10111651478111651549-CDS,intron-Distal,intron-Proximal3.352733.47879HepG2PPIG
chr10111648322111648357-CDS,intron-Distal,intron-Proximal3.767183.05161HepG2PPIG
chr10111646005111646061-CDS,intron-Distal,intron-Proximal4.580344.04372HepG2BCLAF1
chr10111635314111635370-CDS,intron-Distal,intron-Proximal4.152283.25089HepG2AQR
chr10111640594111640690-CDS,intron-Distal,intron-Proximal3.331564.92880K562ZNF622
chr10111678491111678593-intron-Distal3.972103.03891HepG2PTBP1
chr10111637440111637487-intron-Distal,intron-Proximal4.623633.62536K562AQR
chr10111650318111650398-intron-Distal3.376293.60923HepG2HNRNPL
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for XPNPEP1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for XPNPEP1 is not available on ENCORE database.

  • 53 RBPs can affect the levels of XPNPEP1.  








The Knockdown/knockout RNA-Seq assay for XPNPEP1 is not available on ENCORE database.





53 RBPs can affect the gene expression of XPNPEP1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
XPNPEP1ENSG00000108039.13677.00240865.01090-0.353603.743603.05690HepG2ACO1
XPNPEP1ENSG00000108039.13432.78180684.13750-0.660605.793604.42020HepG2ADAR
XPNPEP1ENSG00000108039.131437.49190924.417800.636805.468004.74970HepG2AKAP1
XPNPEP1ENSG00000108039.13713.63920869.05210-0.284202.445901.72010HepG2AKAP8L
XPNPEP1ENSG00000108039.13859.185601049.84850-0.289102.570801.90580HepG2AUH
XPNPEP1ENSG00000108039.13788.84610568.365500.472803.653102.97650HepG2BOP1
XPNPEP1ENSG00000108039.13917.17450656.124600.483104.818103.83470HepG2CALR
XPNPEP1ENSG00000108039.13593.50890945.24980-0.671404.957603.63800HepG2CCAR1
XPNPEP1ENSG00000108039.13721.49060864.79540-0.261402.386401.76090HepG2CKAP4
XPNPEP1ENSG00000108039.13310.42450431.89620-0.476402.465601.44740HepG2CSTF2
XPNPEP1ENSG00000108039.131258.420001083.983000.215202.227901.55210HepG2DAZAP1
XPNPEP1ENSG00000108039.13649.82250799.99850-0.300002.869602.02120HepG2DDX19B
XPNPEP1ENSG00000108039.13940.71350680.025900.468103.996903.19550HepG2DDX21
XPNPEP1ENSG00000108039.13946.53980687.307200.461603.236802.41000HepG2DDX55
XPNPEP1ENSG00000108039.13617.05830827.57390-0.423504.379703.56460HepG2DKC1
XPNPEP1ENSG00000108039.131364.28750731.255800.8996011.4631010.30640HepG2EIF2S1
XPNPEP1ENSG00000108039.13499.31520642.26800-0.363202.463201.44290HepG2EIF3G
XPNPEP1ENSG00000108039.131172.15600805.852300.540503.522402.66130HepG2FIP1L1
XPNPEP1ENSG00000108039.13743.50100564.448800.397402.408601.81600HepG2HNRNPLL
XPNPEP1ENSG00000108039.13607.27330768.49860-0.339703.210002.56060HepG2HNRNPU
XPNPEP1ENSG00000108039.13529.88140773.31990-0.545403.246802.14980HepG2KHSRP
XPNPEP1ENSG00000108039.13603.91220998.10610-0.724905.827104.61210HepG2LARP4
XPNPEP1ENSG00000108039.131008.54480651.902000.629406.482005.29450HepG2MSI2
XPNPEP1ENSG00000108039.13287.78660630.97680-1.132607.237205.45570HepG2NONO
XPNPEP1ENSG00000108039.131098.73990747.653000.555304.659503.73380HepG2PABPC4
XPNPEP1ENSG00000108039.13588.77520779.11280-0.404103.894103.20000HepG2PCBP1
XPNPEP1ENSG00000108039.13564.30050805.02100-0.512602.760101.72110HepG2PCBP2
XPNPEP1ENSG00000108039.13432.71290633.81410-0.550605.763904.68970HepG2PRPF4
XPNPEP1ENSG00000108039.13988.42040792.820600.318002.925202.36530HepG2PTBP1
XPNPEP1ENSG00000108039.13748.856501026.11390-0.454403.871203.17940HepG2PUF60
XPNPEP1ENSG00000108039.131453.077201007.435200.528308.031307.25610HepG2RBM22
XPNPEP1ENSG00000108039.13661.44500821.80590-0.313202.499101.91000HepG2RECQL
XPNPEP1ENSG00000108039.13573.22030819.87000-0.516304.198603.38420HepG2RPLP0
XPNPEP1ENSG00000108039.13422.91450845.06160-0.998708.196305.67220HepG2RTF1
XPNPEP1ENSG00000108039.13604.17510798.12390-0.401604.623703.82770HepG2SMN1
XPNPEP1ENSG00000108039.131635.564501137.877600.5233010.118409.32310HepG2SRFBP1
XPNPEP1ENSG00000108039.131075.99060861.518400.320603.369402.86080HepG2SRSF1
XPNPEP1ENSG00000108039.13418.52020601.17250-0.522502.822601.80980HepG2SRSF3
XPNPEP1ENSG00000108039.13786.948901013.19880-0.364603.646402.94600HepG2SRSF5
XPNPEP1ENSG00000108039.13811.74910543.890900.577605.237503.96400HepG2SUPT6H
XPNPEP1ENSG00000108039.13564.52070746.78210-0.403703.292802.75500HepG2TIAL1
XPNPEP1ENSG00000108039.13787.123301002.55260-0.349002.556901.71970HepG2TUFM
XPNPEP1ENSG00000108039.131009.40840831.514800.279602.713102.01950HepG2UPF1
XPNPEP1ENSG00000108039.13498.73620625.45980-0.326602.598301.94420HepG2ZC3H8
XPNPEP1ENSG00000108039.131292.37420914.507900.498909.533608.67250HepG2ZNF622
XPNPEP1ENSG00000108039.13547.62210776.08140-0.503002.913001.57710HepG2ZRANB2
XPNPEP1ENSG00000108039.131107.269001398.42130-0.336802.343901.79740K562AQR
XPNPEP1ENSG00000108039.13889.30650660.436900.429202.965802.06130K562BOP1
XPNPEP1ENSG00000108039.13313.47490509.97030-0.702105.478403.87390K562CCAR1
XPNPEP1ENSG00000108039.13917.600001157.58570-0.335203.608002.87630K562DDX47
XPNPEP1ENSG00000108039.13364.49130518.74800-0.509102.224901.33520K562EIF3A
XPNPEP1ENSG00000108039.131374.710301667.48070-0.278502.813801.86940K562EIF4G2
XPNPEP1ENSG00000108039.13829.592601036.24050-0.320902.379001.59700K562MAGOH
XPNPEP1ENSG00000108039.13989.786701777.38490-0.8446013.3462011.04150K562MSI2
XPNPEP1ENSG00000108039.13404.15840685.70780-0.762706.904004.68390K562NONO
XPNPEP1ENSG00000108039.131398.560901819.36050-0.379503.169602.29780K562PUF60
XPNPEP1ENSG00000108039.132215.594101267.495500.8056012.4736011.36740K562PUS1
XPNPEP1ENSG00000108039.131471.840401234.918300.253102.164501.62880K562RBM15
XPNPEP1ENSG00000108039.131184.35290987.020700.262801.908001.30780K562SRSF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for XPNPEP1 is not available on ENCORE database.





14 RBPs can affect the splicing of XPNPEP1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEXPNPEP1ENSG00000108039.13chr10-111630488111630662111629710111629787111631549111631619-0.326000.000010.00029excludedHepG2U2AF1
SEXPNPEP1ENSG00000108039.13chr10-111630488111630662111629710111629787111631549111631619-0.188000.000070.00141excludedHepG2U2AF2
SEXPNPEP1ENSG00000108039.13chr10-1116527691116528331116514791116515841116674481116675730.123000.000020.00313includedHepG2AKAP1
SEXPNPEP1ENSG00000108039.13chr10-111674780111674857111667448111667573111683159111683194-0.200000.002190.03236excludedK562PUS1
A3SSXPNPEP1ENSG00000108039.13chr10-1116331241116333351116331241116331851116352851116353570.076000.000000.00006longerK562AGGF1
A3SSXPNPEP1ENSG00000108039.13chr10-1116331241116333351116331241116331851116352851116353570.057000.000020.00403longerK562AKAP8L
A3SSXPNPEP1ENSG00000108039.13chr10-1116331241116333351116331241116331851116352851116353570.173000.000040.00258longerK562U2AF2
A3SSXPNPEP1ENSG00000108039.13chr10-1116674481116676901116674481116675731116747681116748570.057000.000000.00005longerK562AQR
A3SSXPNPEP1ENSG00000108039.13chr10-1116304881116307031116304881116306621116315491116316190.066000.000090.00082longerK562AQR
A3SSXPNPEP1ENSG00000108039.13chr10-1116331241116333351116331241116331851116352851116353570.052000.004650.02714longerK562AQR
A3SSXPNPEP1ENSG00000108039.13chr10-1116331241116333351116331241116331851116352851116353570.061000.000010.00462longerK562UTP18
A3SSXPNPEP1ENSG00000108039.13chr10-1116331241116333351116331241116331851116352851116353570.122000.001330.05666longerK562U2AF1
A3SSXPNPEP1ENSG00000108039.13chr10-1116331241116333351116331241116331851116352851116353570.054000.000020.00428longerK562RBM15
RIXPNPEP1ENSG00000108039.13chr10-1116352851116376251116352851116353571116375471116376250.227000.003610.02617includedHepG2U2AF2
RIXPNPEP1ENSG00000108039.13chr10-1116352851116376251116352851116353571116375471116376250.291000.000020.00050includedHepG2QKI
RIXPNPEP1ENSG00000108039.13chr10-1116352851116376251116352851116353571116375471116376250.220000.000710.00903includedHepG2TAF15
RIXPNPEP1ENSG00000108039.13chr10-1116352851116376251116352851116353571116375471116376250.352000.000910.01325includedHepG2NCBP2
RIXPNPEP1ENSG00000108039.13chr10-1116352851116376251116352851116353571116375471116376250.269000.000170.00133includedK562AQR
MXEXPNPEP1ENSG00000108039.13chr10-1116527691116528331116674481116675731116514791116515841116747681116748570.230000.000530.084761includedK562KHDRBS1
MXEXPNPEP1ENSG00000108039.13chr10-1116527691116528331116674481116675731116514791116515841116747681116748570.223000.003870.052511includedHepG2HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for XPNPEP1 is not avaliable on ENCORE database.