WDR55

General Information

Gene Name       : WDR55
Gene ID             : ENSG00000120314.18
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: WDR55)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878WDR55ENSG00000120314.1811.0013.1012.05ENCSR000AEF
HepG2WDR55ENSG00000120314.1814.0911.0512.57ENCSR985KAT
K562WDR55ENSG00000120314.1828.2023.6125.91ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for WDR55 is not avaliable on ENCORE database.



Proteins bound to RNA
  • WDR55 RNA is bound by 18 proteins.  







eCLIP assay for WDR55 is not avaliable on ENCORE database.





18 proteins are bound to WDR55 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr5140048917140048930+3'-UTR,CDS,intron-Proximal4.009894.68902HepG2PPIG
chr5140048646140048695+3'-UTR,CDS,intron-Proximal3.066023.20367K562RBM15
chr5140048650140048696+3'-UTR,CDS,intron-Proximal4.939105.81941K562U2AF1
chr5140051753140051834+3'-UTR,intron-Distal5.3440318.13060K562UPF1
chr5140050885140050942+3'-UTR,intron-Proximal4.202519.37242K562UPF1
chr5140048642140048705+3'-UTR,CDS,intron-Proximal5.0217464.59290K562BUD13
chr5140048592140048647+3'-UTR,intron-Proximal4.1288712.47466K562EFTUD2
chr5140048265140048324+3'-UTR,5'-UTR,CDS3.636073.12746HepG2GRWD1
chr5140048594140048638+3'-UTR,intron-Proximal4.5330424.58031K562GPKOW
chr5140051834140051887+3'-UTR,intron-Distal,intron-Proximal5.9433013.23699K562UPF1
chr5140048651140048697+3'-UTR,CDS,intron-Proximal4.1644210.51303K562U2AF2
chr5140049168140049207+3'-UTR,CDS3.515933.86355HepG2PPIG
chr5140049948140049984+3'-UTR,intron-Distal3.364093.37083K562UPF1
chr5140048789140048835+3'-UTR,CDS,intron-Proximal4.797649.88154HepG2PPIG
chr5140050586140050693+3'-UTR,intron-Distal3.439883.29111K562FAM120A
chr5140048705140048777+3'-UTR,CDS4.0565213.85622K562BUD13
chr5140051427140051522+3'-UTR,intron-Distal4.5181513.96735K562UPF1
chr5140051193140051230+3'-UTR,intron-Distal,intron-Proximal4.871416.42091K562UPF1
chr5140050638140050675+3'-UTR,intron-Distal4.973186.81621K562UPF1
chr5140048558140048688+3'-UTR,CDS,intron-Proximal5.347159.24583HepG2AQR
chr5140049253140049282+3'-UTR,5'-UTR,intron-Proximal3.761435.24353K562UPF1
chr5140048598140048652+3'-UTR,intron-Proximal4.2773213.84324K562XRN2
chr5140048638140048700+3'-UTR,CDS,intron-Proximal5.0733957.66007K562GPKOW
chr5140048664140048697+3'-UTR,CDS5.8637716.14015HepG2BUD13
chr5140048577140048645+3'-UTR,intron-Proximal5.3102013.10719HepG2PRPF8
chr5140048777140048827+3'-UTR,CDS5.4821010.54118K562BUD13
chr5140048644140048664+3'-UTR,intron-Proximal4.8696517.81627HepG2BUD13
chr5140048585140048694+3'-UTR,CDS,intron-Proximal4.180029.68074HepG2EFTUD2
chr5140048647140048699+3'-UTR,CDS,intron-Proximal3.6094312.26869K562EFTUD2
chr5140048603140048703+3'-UTR,CDS,intron-Proximal3.7832513.63842K562AQR
chr5140048934140048969+3'-UTR,CDS5.064918.38780K562BUD13
chr5140048918140048934+3'-UTR,CDS5.164689.25476K562BUD13
chr5140048599140048696+3'-UTR,CDS,intron-Proximal4.2188026.34147K562SF3B4
chr5140048604140048644+3'-UTR,intron-Proximal3.793306.68812HepG2BUD13
chr5140048652140048703+3'-UTR,CDS,intron-Proximal5.0890419.97206K562XRN2
chr5140048726140048766+3'-UTR,CDS4.346073.57329K562XRN2
chr5140049651140049671+3'-UTR,intron-Distal3.330183.06830K562UPF1
chr5140048589140048642+3'-UTR,intron-Proximal4.4451628.27990K562BUD13
chr5140048649140048699+3'-UTR,CDS,intron-Proximal4.2807012.61233HepG2PRPF8
chr5140047860140047921+5'-UTR,CDS,intron-Proximal3.543574.94406K562YBX3
chr5140044446140044570+5'-UTR,CDS4.202894.26442K562DDX3X
chr5140047899140047972+5'-UTR,CDS,intron-Proximal4.620825.58500K562UCHL5
chr5140044456140044745+5'-UTR,CDS,intron-Proximal3.722015.93218HepG2SRSF1
chr5140044687140044772+CDS,intron-Proximal4.308244.98250K562AQR
chr5140044651140044749+CDS,intron-Proximal3.593255.62208HepG2PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for WDR55 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for WDR55 is not available on ENCORE database.

  • 31 RBPs can affect the levels of WDR55.  








The Knockdown/knockout RNA-Seq assay for WDR55 is not available on ENCORE database.





31 RBPs can affect the gene expression of WDR55 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
WDR55ENSG00000120314.14251.45040371.83750-0.564403.236902.07840HepG2CSTF2
WDR55ENSG00000120314.141216.01450872.570400.478706.957306.02590HepG2CELF1
WDR55ENSG00000120314.14956.62800591.890900.692505.521304.47280HepG2DDX55
WDR55ENSG00000120314.14677.73830527.782500.360702.418601.34630HepG2FASTKD2
WDR55ENSG00000120314.14931.77470749.392100.314201.884201.30180HepG2HNRNPK
WDR55ENSG00000120314.14668.96010465.495700.523102.587501.56790HepG2METAP2
WDR55ENSG00000120314.14853.63710690.873800.305102.031501.33350HepG2MSI2
WDR55ENSG00000120314.14791.40800565.127400.485702.096201.34000HepG2PABPC1
WDR55ENSG00000120314.14891.53640732.132700.284102.398301.82400HepG2PCBP1
WDR55ENSG00000120314.14578.60310432.783000.418802.805502.18670HepG2RPS19
WDR55ENSG00000120314.141143.71410875.795800.385001.939901.37290HepG2SF3A3
WDR55ENSG00000120314.14633.73850809.57190-0.353303.192002.69370HepG2SRSF1
WDR55ENSG00000120314.14822.18790658.624800.319903.006302.43590HepG2SRSF9
WDR55ENSG00000120314.14806.10660955.77490-0.245702.079801.61900HepG2SSB
WDR55ENSG00000120314.14586.94770727.65840-0.310002.303001.78360HepG2TAF15
WDR55ENSG00000120314.14716.54920507.449800.497704.599303.98900HepG2TIAL1
WDR55ENSG00000120314.14719.45690511.978300.490705.632104.87980HepG2TRIM56
WDR55ENSG00000120314.14491.74940348.061700.498503.008602.21970HepG2UCHL5
WDR55ENSG00000120314.14995.54840749.872100.408704.774604.02300HepG2UTP3
WDR55ENSG00000120314.141118.36270854.218900.388605.609804.90140HepG2ZNF622
WDR55ENSG00000120314.142958.648202099.596500.494705.587704.80420K562AQR
WDR55ENSG00000120314.141186.75610954.080200.314702.597501.59000K562DDX3X
WDR55ENSG00000120314.141337.470101036.616500.367504.304503.57380K562FXR1
WDR55ENSG00000120314.141310.429301052.504300.316102.397201.65550K562GPKOW
WDR55ENSG00000120314.141356.194101016.220600.416303.181601.61790K562NUSAP1
WDR55ENSG00000120314.141187.313701794.12160-0.595606.012904.78190K562PCBP3
WDR55ENSG00000120314.141008.586501376.15240-0.448305.289104.18280K562POLR2G
WDR55ENSG00000120314.141324.45620925.454900.517105.488304.15310K562PSIP1
WDR55ENSG00000120314.141323.009001050.270700.333002.972002.28570K562PTBP1
WDR55ENSG00000120314.141008.66230781.635600.367803.353802.41080K562SF3B4
WDR55ENSG00000120314.141906.116402365.38110-0.311402.783801.91810K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for WDR55 is not available on ENCORE database.





17 RBPs can affect the splicing of WDR55 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
RIWDR55ENSG00000120314.14chr5+1400478181400480871400478181400479191400479991400480870.205000.000680.01863includedK562HNRNPC
RIWDR55ENSG00000120314.14chr5+1400478181400480871400478181400479191400479991400480870.149000.000300.03084includedK562HNRNPU
RIWDR55ENSG00000120314.14chr5+1400478181400480871400478181400479191400479991400480870.197000.000010.00087includedK562SRSF1
RIWDR55ENSG00000120314.14chr5+140047818140048087140047818140047919140047999140048087-0.098000.008590.08059excludedK562AGGF1
RIWDR55ENSG00000120314.14chr5+1400478181400480871400478181400479191400479991400480870.201000.002810.05618includedHepG2SRSF1
RIWDR55ENSG00000120314.14chr5+1400478181400480871400478181400479191400479991400480870.186000.000190.02385includedK562MTPAP
RIWDR55ENSG00000120314.14chr5+1400478181400480871400478181400479191400479991400480870.251000.000210.01573includedHepG2HNRNPA1
RIWDR55ENSG00000120314.14chr5+1400478181400480871400478181400479191400479991400480870.156000.001070.02508includedK562RBM22
RIWDR55ENSG00000120314.14chr5+1400478181400480871400478181400479191400479991400480870.211000.000170.00287includedHepG2TAF15
RIWDR55ENSG00000120314.14chr5+1400484751400488331400484751400485751400486631400488330.264000.009160.07340includedHepG2U2AF1
RIWDR55ENSG00000120314.14chr5+1400478181400480871400478181400479191400479991400480870.196000.002410.02461includedHepG2U2AF1
RIWDR55ENSG00000120314.14chr5+1400478181400480871400478181400479191400479991400480870.139000.005790.08933includedHepG2KHSRP
RIWDR55ENSG00000120314.14chr5+1400478181400480871400478181400479191400479991400480870.235000.000180.00536includedHepG2TIAL1
RIWDR55ENSG00000120314.14chr5+1400484751400488331400484751400485751400486631400488330.268000.004250.04527includedHepG2NCBP2
RIWDR55ENSG00000120314.14chr5+1400478181400480871400478181400479191400479991400480870.165000.001290.01748includedHepG2NCBP2
RIWDR55ENSG00000120314.14chr5+1400478181400480871400478181400479191400479991400480870.164000.004410.03199includedHepG2SF3B4
RIWDR55ENSG00000120314.14chr5+1400484751400488331400484751400485751400486631400488330.269000.005490.07389includedHepG2FUBP3
RIWDR55ENSG00000120314.14chr5+1400478181400480871400478181400479191400479991400480870.223000.000060.00107includedK562EFTUD2
RIWDR55ENSG00000120314.14chr5+1400478181400480871400478181400479191400479991400480870.361000.000000.00000includedK562AQR
RIWDR55ENSG00000120314.14chr5+1400484751400488331400484751400485751400486631400488330.175000.003260.01955includedK562AQR
RIWDR55ENSG00000120314.14chr5+1400484751400488331400484751400485751400486631400488330.302000.000450.02247includedHepG2XRN2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for WDR55 is not avaliable on ENCORE database.