TRPV1

General Information

Gene Name       : TRPV1
Gene ID             : ENSG00000196689.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TRPV1)


Antibody Validation


Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TRPV1ENSG00000196689.120.961.611.29ENCSR000AEF
HepG2TRPV1ENSG00000196689.125.954.014.98ENCSR985KAT
K562TRPV1ENSG00000196689.120.090.060.07ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TRPV1 is not avaliable on ENCORE database.



Proteins bound to RNA

  • TRPV1 RNA is bound by 15 proteins.  







eCLIP assay for TRPV1 is not avaliable on ENCORE database.





15 proteins are bound to TRPV1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1734701073470228-3'-UTR,CDS,intron-Distal,intron-Proximal4.728395.90013HepG2PABPN1
chr1734955443495656-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.0284911.73211HepG2GRWD1
chr1734958963495992-5'-UTR,intron-Distal3.279334.14880HepG2CSTF2T
chr1734955423495659-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.0271110.14528HepG2PPIG
chr1734944183494486-3'-UTR,CDS,intron-Distal,intron-Proximal3.867474.90219HepG2AQR
chr1734804823480552-CDS,intron-Distal,intron-Proximal5.5959911.21358HepG2SF3B4
chr1734944243494496-3'-UTR,CDS,intron-Distal,intron-Proximal4.0510310.59198HepG2PRPF8
chr1734810063481048-CDS,intron-Distal4.717414.38106HepG2PPIG
chr1734935443493581-3'-UTR,CDS,intron-Distal,intron-Proximal4.023906.64430HepG2PPIG
chr1734933643493402-3'-UTR,CDS,intron-Distal,intron-Proximal3.290155.21025HepG2PPIG
chr1734915813491649-3'-UTR,CDS,intron-Distal3.683305.35682HepG2GRWD1
chr1734769613477012-CDS,intron-Distal3.153733.79741HepG2GRWD1
chr1734890613489100-3'-UTR,CDS,intron-Distal,intron-Proximal4.430964.84481HepG2PPIG
chr1734914383491495-3'-UTR,CDS,intron-Distal,intron-Proximal3.507566.18341HepG2PRPF8
chr1734935833493659-3'-UTR,CDS,intron-Distal4.108348.00190HepG2GRWD1
chr1734772243477248-CDS,intron-Distal3.970993.14999HepG2GRWD1
chr1734890733489157-3'-UTR,CDS,intron-Distal3.983078.00190HepG2GRWD1
chr1734943723494420-3'-UTR,CDS,intron-Distal,intron-Proximal3.672167.56654HepG2PRPF8
chr1734945063494586-3'-UTR,CDS,intron-Distal,intron-Proximal3.879746.69386HepG2GRWD1
chr1734753803475444-CDS,intron-Distal,intron-Proximal4.413429.43475HepG2PRPF8
chr1734942093494261-3'-UTR,CDS,intron-Distal,intron-Proximal3.048755.54036HepG2AQR
chr1734932953493341-3'-UTR,CDS,intron-Distal4.175934.69889HepG2GRWD1
chr1734915013491581-3'-UTR,CDS,intron-Distal,intron-Proximal3.119314.55250HepG2GRWD1
chr1734892143489295-3'-UTR,CDS,intron-Distal,intron-Proximal3.870983.05889HepG2SF3B4
chr1734935813493663-3'-UTR,CDS,intron-Distal3.298736.47139HepG2PPIG
chr1734953603495423-3'-UTR,CDS,intron-Distal,intron-Proximal3.687824.27261HepG2GRWD1
chr1734942573494337-3'-UTR,CDS,intron-Distal,intron-Proximal3.223894.96088HepG2GRWD1
chr1734937223493789-intron-Distal,intron-Proximal4.952436.74224HepG2AQR
chr1734969033497006-intron-Distal3.339635.13321HepG2RBFOX2
chr1734966903496808-intron-Distal3.827087.92153HepG2RBFOX2
chr1734966763496812-intron-Distal4.205399.28502HepG2PRPF4
chr1734967023496803-intron-Distal3.873603.63902HepG2CSTF2T
chr1734747153474776-intron-Distal,intron-Proximal3.564014.58630HepG2RBM22
chr1734731813473265-intron-Distal4.9759112.06932HepG2DDX59
chr1734998793499925-intron-Distal4.2709211.69358HepG2HNRNPM
chr1734966743496776-intron-Distal3.244623.15341HepG2AGGF1
chr1734991293499232-intron-Distal,intron-Proximal3.704833.06084HepG2HNRNPK
chr1734997913499855-intron-Distal4.4095613.92113HepG2HNRNPM
chr1734997223499759-intron-Distal4.189933.60235HepG2HNRNPM
chr1734998553499878-intron-Distal4.455629.46032HepG2HNRNPM
chr1734731713473283-intron-Distal5.201698.24380HepG2HNRNPK
chr1734731783473285-intron-Distal4.290467.49381HepG2PCBP2
chr1734749593475018-intron-Distal,intron-Proximal3.663465.00060HepG2SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TRPV1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TRPV1 is not available on ENCORE database.

  • 38 RBPs can affect the levels of TRPV1.  








The Knockdown/knockout RNA-Seq assay for TRPV1 is not available on ENCORE database.





38 RBPs can affect the gene expression of TRPV1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TRPV1ENSG00000196689.68.1662079.85670-3.289702.663801.60940HepG2AATF
TRPV1ENSG00000196689.614.72410153.87100-3.3855020.6386019.32550HepG2AKAP1
TRPV1ENSG00000196689.687.3240015.781502.468006.065704.65270HepG2BCCIP
TRPV1ENSG00000196689.680.9051013.695202.562503.759502.72540HepG2BCLAF1
TRPV1ENSG00000196689.690.715209.722903.2218012.6661010.67420HepG2CSTF2
TRPV1ENSG00000196689.694.4144014.503302.702506.434704.55890HepG2DDX27
TRPV1ENSG00000196689.693.35370147.41360-0.659102.042701.49640HepG2DDX3X
TRPV1ENSG00000196689.645.98600126.59170-1.460902.982702.34340HepG2DDX6
TRPV1ENSG00000196689.6127.4003079.142100.686802.328701.69860HepG2DKC1
TRPV1ENSG00000196689.6360.13120134.550501.420303.777603.03560HepG2EIF4A3
TRPV1ENSG00000196689.670.25060130.96750-0.898602.646701.97330HepG2EIF4B
TRPV1ENSG00000196689.657.66460125.91030-1.126604.370403.54230HepG2G3BP1
TRPV1ENSG00000196689.643.1166014.731801.549203.061401.62360HepG2HNRNPA0
TRPV1ENSG00000196689.665.5401032.680901.003802.121201.54770HepG2HNRNPA1
TRPV1ENSG00000196689.6105.3029036.354401.534203.932403.11610HepG2HNRNPC
TRPV1ENSG00000196689.648.6509015.106501.687203.987202.15790HepG2HNRNPD
TRPV1ENSG00000196689.6404.44970135.745401.575001.853301.31170HepG2MAGOH
TRPV1ENSG00000196689.641.96720136.51450-1.701703.387602.69610HepG2MATR3
TRPV1ENSG00000196689.681.8494029.385901.477704.034102.30610HepG2NOLC1
TRPV1ENSG00000196689.667.2455014.302802.233004.140702.78640HepG2NONO
TRPV1ENSG00000196689.6113.1814053.983601.067902.858402.09700HepG2NSUN2
TRPV1ENSG00000196689.6106.7230015.936202.743402.620501.76100HepG2PABPC1
TRPV1ENSG00000196689.613.8949035.74280-1.363102.263801.49060HepG2PARN
TRPV1ENSG00000196689.659.9021015.637401.937505.383903.29190HepG2PNPT1
TRPV1ENSG00000196689.652.4365016.477601.670003.875502.33250HepG2SART3
TRPV1ENSG00000196689.665.3592016.631301.974405.469003.35570HepG2SBDS
TRPV1ENSG00000196689.6248.5668096.067601.371406.625305.89600HepG2SSB
TRPV1ENSG00000196689.679.8448015.215602.391609.882107.67940HepG2STIP1
TRPV1ENSG00000196689.659.8636015.441201.954802.900502.21060HepG2SUPV3L1
TRPV1ENSG00000196689.6152.3063035.080402.118107.026906.29720HepG2TIAL1
TRPV1ENSG00000196689.6167.6588014.101603.571503.750902.56760HepG2UPF2
TRPV1ENSG00000196689.636.66720121.06490-1.723204.950704.18910HepG2UTP3
TRPV1ENSG00000196689.661.2851015.671801.967305.853004.26090HepG2XPO5
TRPV1ENSG00000196689.6206.4533015.200603.7635024.0259021.99220HepG2XRN2
TRPV1ENSG00000196689.632.581209.482501.780602.686701.48710K562ABCF1
TRPV1ENSG00000196689.631.958808.710801.875202.308901.56390K562PUF60
TRPV1ENSG00000196689.632.776109.263901.822802.770401.70210K562PUM1
TRPV1ENSG00000196689.638.153609.078302.071203.687102.57810K562PUM2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TRPV1 is not available on ENCORE database.





4 RBPs can affect the splicing of TRPV1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
RITRPV1ENSG00000196689.6chr17-349425734946473494257349441034944803494647-0.102000.002110.09414excludedHepG2TBRG4
RITRPV1ENSG00000196689.6chr17-3494257349464734942573494410349448034946470.198000.016090.09204includedHepG2SF3B4
RITRPV1ENSG00000196689.6chr17-3494257349464734942573494410349448034946470.220000.002310.03888includedHepG2FUBP3
RITRPV1ENSG00000196689.6chr17-349425734946473494257349441034944803494647-0.131000.000500.08234excludedHepG2SUGP2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TRPV1 is not avaliable on ENCORE database.