TRIM52-AS1

General Information

Gene Name       : TRIM52-AS1
Gene ID             : ENSG00000248275.1
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TRIM52-AS1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TRIM52-AS1ENSG00000248275.112.3413.1812.76ENCSR000AEF
HepG2TRIM52-AS1ENSG00000248275.111.348.529.93ENCSR985KAT
K562TRIM52-AS1ENSG00000248275.124.0722.5923.33ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TRIM52-AS1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TRIM52-AS1 RNA is bound by 7 proteins.  







eCLIP assay for TRIM52-AS1 is not avaliable on ENCORE database.





7 proteins are bound to TRIM52-AS1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr5180692676180692692+intron-Distal6.0356619.01023K562NSUN2
chr5180694131180694190+intron-Distal5.568156.08124K562AGGF1
chr5180692669180692693+intron-Distal4.782246.24350K562PABPC4
chr5180692667180692676+intron-Distal3.6172319.64530K562WRN
chr5180692667180692694+intron-Distal4.493819.50052HepG2XPO5
chr5180692667180692676+intron-Distal6.0356619.01023K562NSUN2
chr5180692676180692692+intron-Distal3.6172319.64530K562WRN
chr5180690949180691088+intron-Distal,intron-Proximal4.191564.50986K562IGF2BP1
chr5180694740180694824+intron-Distal4.326158.33958K562AGGF1
chr5180688437180688521+intron-Distal,intron-Proximal3.780923.39593HepG2PRPF4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TRIM52-AS1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TRIM52-AS1 is not available on ENCORE database.

  • 54 RBPs can affect the levels of TRIM52-AS1.  








The Knockdown/knockout RNA-Seq assay for TRIM52-AS1 is not available on ENCORE database.





54 RBPs can affect the gene expression of TRIM52-AS1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TRIM52-AS1ENSG00000248275.1115.86720186.17910-0.684202.338401.84500HepG2AKAP1
TRIM52-AS1ENSG00000248275.143.6800080.94310-0.889902.586101.84170HepG2AKAP8L
TRIM52-AS1ENSG00000248275.135.4415085.88170-1.276903.842003.14880HepG2BOP1
TRIM52-AS1ENSG00000248275.146.1634080.54850-0.803102.248501.63940HepG2CKAP4
TRIM52-AS1ENSG00000248275.164.65380129.17330-0.998503.220702.39070HepG2CNOT7
TRIM52-AS1ENSG00000248275.156.72320120.55730-1.087704.363203.58880HepG2CELF1
TRIM52-AS1ENSG00000248275.131.9063085.73400-1.426004.793303.92760HepG2DDX21
TRIM52-AS1ENSG00000248275.194.68650162.72580-0.781202.905602.25080HepG2EIF4A3
TRIM52-AS1ENSG00000248275.152.60410158.46980-1.591007.162606.08370HepG2EIF4B
TRIM52-AS1ENSG00000248275.192.24470152.32550-0.723602.593401.94910HepG2G3BP1
TRIM52-AS1ENSG00000248275.135.9489073.87920-1.039202.662301.66510HepG2GNB2L1
TRIM52-AS1ENSG00000248275.1126.3835078.126500.693802.707901.99810HepG2HNRNPF
TRIM52-AS1ENSG00000248275.1199.39720118.043600.756204.496803.65400HepG2HNRNPL
TRIM52-AS1ENSG00000248275.1154.5475066.471401.217107.051206.11910HepG2HNRNPU
TRIM52-AS1ENSG00000248275.184.71680154.82570-0.869903.360602.62330HepG2IGF2BP2
TRIM52-AS1ENSG00000248275.1116.4950067.897400.778703.141802.36480HepG2ILF2
TRIM52-AS1ENSG00000248275.183.59390157.54480-0.914303.051802.17650HepG2LARP4
TRIM52-AS1ENSG00000248275.178.03190164.29400-1.074104.891604.02720HepG2MAGOH
TRIM52-AS1ENSG00000248275.170.56140165.20490-1.227305.497004.63210HepG2MATR3
TRIM52-AS1ENSG00000248275.1101.31370169.08940-0.739002.780902.14690HepG2NCBP2
TRIM52-AS1ENSG00000248275.1138.6460075.631300.874203.107302.31590HepG2NSUN2
TRIM52-AS1ENSG00000248275.199.15070150.55300-0.602601.958701.34250HepG2PABPC4
TRIM52-AS1ENSG00000248275.199.80740146.59240-0.554602.063401.52670HepG2PCBP1
TRIM52-AS1ENSG00000248275.143.6813089.32140-1.032002.996901.91670HepG2PCBP2
TRIM52-AS1ENSG00000248275.1107.7038059.286200.861203.142802.36180HepG2PPIL4
TRIM52-AS1ENSG00000248275.171.85500149.15370-1.053605.428904.71690HepG2PTBP1
TRIM52-AS1ENSG00000248275.156.74000122.68280-1.112504.218003.49960HepG2PUF60
TRIM52-AS1ENSG00000248275.151.66250113.21200-1.131803.918003.32960HepG2RBM22
TRIM52-AS1ENSG00000248275.190.31640146.61610-0.699002.623001.96400HepG2RBM25
TRIM52-AS1ENSG00000248275.169.81560166.00170-1.249607.006706.21460HepG2NELFE
TRIM52-AS1ENSG00000248275.1102.30710154.59370-0.595602.226501.66670HepG2RECQL
TRIM52-AS1ENSG00000248275.1135.4616059.192601.194306.196705.29220HepG2SAFB2
TRIM52-AS1ENSG00000248275.168.27990118.65560-0.797202.632501.97500HepG2SF3A3
TRIM52-AS1ENSG00000248275.1106.47990155.30530-0.544501.938101.42860HepG2SF3B4
TRIM52-AS1ENSG00000248275.133.45840162.09810-2.2764016.1135015.17360HepG2SRSF1
TRIM52-AS1ENSG00000248275.160.85560121.14370-0.993303.743603.03630HepG2SRSF5
TRIM52-AS1ENSG00000248275.183.67440137.76320-0.719302.592801.98640HepG2SUCLG1
TRIM52-AS1ENSG00000248275.1137.4995083.124200.726002.436401.75010HepG2TARDBP
TRIM52-AS1ENSG00000248275.198.89740175.47470-0.827302.418801.41820HepG2TBRG4
TRIM52-AS1ENSG00000248275.1108.4596065.168100.734802.603202.05270HepG2TRIM56
TRIM52-AS1ENSG00000248275.146.94630154.39950-1.717609.034207.89180HepG2U2AF1
TRIM52-AS1ENSG00000248275.154.92900127.70100-1.217102.310601.41870HepG2U2AF2
TRIM52-AS1ENSG00000248275.1311.96130217.362900.521203.024502.43490K562AGGF1
TRIM52-AS1ENSG00000248275.1130.39090219.82500-0.753503.103902.48930K562AQR
TRIM52-AS1ENSG00000248275.1170.00360382.31880-1.169206.067404.76440K562BOP1
TRIM52-AS1ENSG00000248275.1227.61670406.50350-0.836707.352706.06760K562CPSF6
TRIM52-AS1ENSG00000248275.1235.43630355.20160-0.593304.403603.60720K562DDX47
TRIM52-AS1ENSG00000248275.1113.29000167.85580-0.567202.265501.60560K562EIF2S2
TRIM52-AS1ENSG00000248275.1284.05600413.62910-0.542203.352902.40580K562FMR1
TRIM52-AS1ENSG00000248275.1200.02920350.59730-0.809605.380104.05960K562FTO
TRIM52-AS1ENSG00000248275.1264.92410388.10190-0.550903.329702.45980K562GPKOW
TRIM52-AS1ENSG00000248275.1118.00630241.77160-1.034806.333505.46590K562HNRNPC
TRIM52-AS1ENSG00000248275.1357.98420196.024800.868807.826806.33080K562HNRNPU
TRIM52-AS1ENSG00000248275.1162.25490331.41390-1.030406.272604.80550K562KRR1
TRIM52-AS1ENSG00000248275.1306.63800218.551100.488502.156201.62130K562RBM15
TRIM52-AS1ENSG00000248275.1205.54000280.30880-0.447602.302101.55240K562SF3A3
TRIM52-AS1ENSG00000248275.1214.74200287.17920-0.419302.235701.38510K562SRPK2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TRIM52-AS1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of TRIM52-AS1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for TRIM52-AS1 is not avaliable on ENCORE database.