TPST1

General Information

Gene Name       : TPST1
Gene ID             : ENSG00000169902.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TPST1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TPST1ENSG00000169902.144.164.104.13ENCSR000AEF
HepG2TPST1ENSG00000169902.1421.0419.8020.42ENCSR985KAT
K562TPST1ENSG00000169902.140.420.510.46ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TPST1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TPST1 RNA is bound by 7 proteins.  







eCLIP assay for TPST1 is not avaliable on ENCORE database.





7 proteins are bound to TPST1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr76567032865670506+5'-UTR5.3451656.95078HepG2DDX3X
chr76567071065670883+5'-UTR,intron-Distal,intron-Proximal3.976994.84827HepG2HNRNPK
chr76567075065670808+5'-UTR,intron-Distal,intron-Proximal4.660464.42259HepG2DDX59
chr76567261165672662+intron-Distal4.212094.10336HepG2SUGP2
chr76584384165843894+intron-Distal3.518823.61820HepG2HLTF
chr76578034865780445+intron-Distal5.0807612.32421HepG2XPO5
chr76583928265839363+intron-Distal4.882627.20560HepG2HNRNPL
chr76567906665679205+intron-Distal3.511335.13388HepG2HNRNPL
chr76584233565842389+intron-Distal4.365773.85494HepG2HLTF
chr76580230965802373+intron-Distal4.513499.53817HepG2HLTF
chr76584147065841527+intron-Distal4.463734.74256HepG2HLTF
chr76567301965673070+intron-Distal4.185053.54208HepG2SUGP2
chr76580462965804712+intron-Distal3.260013.08145HepG2HLTF
chr76569936465699462+intron-Distal3.821963.51804HepG2HNRNPL
chr76567225165672341+intron-Distal3.116194.86332HepG2SUGP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TPST1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TPST1 is not available on ENCORE database.

  • 56 RBPs can affect the levels of TPST1.  








The Knockdown/knockout RNA-Seq assay for TPST1 is not available on ENCORE database.





56 RBPs can affect the gene expression of TPST1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TPST1ENSG00000169902.9281.91000406.62270-0.528503.105102.05370HepG2ADAR
TPST1ENSG00000169902.9426.21240298.505300.513703.049702.42430HepG2BOP1
TPST1ENSG00000169902.9609.07370413.376300.559104.718203.74480HepG2CALR
TPST1ENSG00000169902.9267.42240458.24880-0.777009.105008.03300HepG2CKAP4
TPST1ENSG00000169902.9335.69570714.82470-1.090408.522207.20030HepG2CNOT7
TPST1ENSG00000169902.9266.01090372.63770-0.486302.767901.66370HepG2CPSF7
TPST1ENSG00000169902.9261.86670423.91430-0.694907.544406.28100HepG2DDX19B
TPST1ENSG00000169902.9311.84870417.57420-0.421202.586201.46850HepG2DDX1
TPST1ENSG00000169902.9252.38000363.47200-0.526202.621601.86620HepG2DDX55
TPST1ENSG00000169902.9303.85390405.81890-0.417503.151502.46310HepG2DNAJC2
TPST1ENSG00000169902.9257.11860591.71010-1.2025013.1865011.95900HepG2EIF2S1
TPST1ENSG00000169902.9468.73640653.87580-0.480202.814002.16930HepG2EIF4A3
TPST1ENSG00000169902.9587.59230762.04970-0.375103.480902.81840HepG2ETF1
TPST1ENSG00000169902.9345.18980447.88980-0.375802.143101.40890HepG2EWSR1
TPST1ENSG00000169902.9487.75960659.83450-0.435902.576401.90920HepG2FXR1
TPST1ENSG00000169902.9453.04700649.82850-0.520403.536602.52360HepG2G3BP2
TPST1ENSG00000169902.9269.89970413.38330-0.615104.123903.35840HepG2HNRNPA1
TPST1ENSG00000169902.9310.64410459.80380-0.565803.606102.82230HepG2HNRNPC
TPST1ENSG00000169902.9351.40340619.87020-0.818807.596606.48380HepG2HNRNPK
TPST1ENSG00000169902.9189.15050296.45060-0.648303.266702.58950HepG2HNRNPLL
TPST1ENSG00000169902.9501.43880660.06530-0.396502.191801.60620HepG2MAGOH
TPST1ENSG00000169902.9531.71800369.785300.523903.510602.60100HepG2MSI2
TPST1ENSG00000169902.9483.58150679.36460-0.490403.037602.37540HepG2NCBP2
TPST1ENSG00000169902.9460.90600653.35830-0.503402.137801.37340HepG2PABPC1
TPST1ENSG00000169902.9302.83080407.39890-0.427902.820902.07780HepG2PPIL4
TPST1ENSG00000169902.9207.18900394.97680-0.930809.955108.62230HepG2PRPF4
TPST1ENSG00000169902.9442.73750618.42080-0.482103.318502.67440HepG2PUF60
TPST1ENSG00000169902.9333.87430700.47130-1.0690016.5052015.16460HepG2QKI
TPST1ENSG00000169902.9209.66050414.98110-0.985005.151004.20470HepG2RAVER1
TPST1ENSG00000169902.9508.43280636.93070-0.325102.326601.84040HepG2RBM22
TPST1ENSG00000169902.9438.44040635.70250-0.536004.556103.70800HepG2RBM25
TPST1ENSG00000169902.9266.20460392.43770-0.559902.598001.57270HepG2RCC2
TPST1ENSG00000169902.9482.21740719.76230-0.577806.492505.72290HepG2NELFE
TPST1ENSG00000169902.9511.00150670.32280-0.391503.425102.74850HepG2RECQL
TPST1ENSG00000169902.9311.47120406.77410-0.385102.564501.93980HepG2SAFB2
TPST1ENSG00000169902.9201.66470293.42340-0.541002.560701.87980HepG2SF3B1
TPST1ENSG00000169902.9452.59500673.36790-0.573206.303205.47220HepG2SF3B4
TPST1ENSG00000169902.9339.16500474.37600-0.484004.271303.50270HepG2SMN1
TPST1ENSG00000169902.9581.39380702.83190-0.273702.038701.61540HepG2SRSF1
TPST1ENSG00000169902.9449.87990610.64870-0.440803.584202.88830HepG2SRSF5
TPST1ENSG00000169902.9595.59640489.475500.283002.118401.50010HepG2SRSF7
TPST1ENSG00000169902.9545.58310694.43450-0.348002.738902.11980HepG2SUCLG1
TPST1ENSG00000169902.9404.56880680.42730-0.750105.362503.51740HepG2SUGP2
TPST1ENSG00000169902.9533.45990361.805400.560102.767302.09030HepG2SUPV3L1
TPST1ENSG00000169902.9348.32090631.68170-0.8588011.5693010.54620HepG2TAF15
TPST1ENSG00000169902.9370.09800660.09390-0.834803.769102.53160HepG2TBRG4
TPST1ENSG00000169902.9348.16740432.69330-0.313601.954601.35080HepG2UPF1
TPST1ENSG00000169902.9544.91120389.797200.483204.556003.72880HepG2ZC3H8
TPST1ENSG00000169902.9719.43980475.880700.596208.505307.68160HepG2ZNF622
TPST1ENSG00000169902.919.7097050.26170-1.350602.536301.41800K562CCDC124
TPST1ENSG00000169902.98.5487026.67260-1.641602.194901.35340K562EIF4G2
TPST1ENSG00000169902.947.9824013.206001.861204.036502.53320K562NCBP2
TPST1ENSG00000169902.95.7278025.34910-2.145902.626601.67400K562PCBP2
TPST1ENSG00000169902.96.4257027.68300-2.107103.425902.69580K562PTBP1
TPST1ENSG00000169902.934.305303.479003.301604.947303.85300K562RPS19
TPST1ENSG00000169902.968.5311023.519001.542802.688901.50940K562SF1
TPST1ENSG00000169902.99.8837027.46460-1.474402.027501.41580K562TARDBP
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TPST1 is not available on ENCORE database.





1 RBPs can affect the splicing of TPST1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
MXETPST1ENSG00000169902.9chr7+6575149765751696658174916581754265705311657062576582181165821858-0.164000.001960.084692includedHepG2DDX3X

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TPST1 is not avaliable on ENCORE database.