ST3GAL4

General Information

Gene Name       : ST3GAL4
Gene ID             : ENSG00000110080.18
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ST3GAL4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ST3GAL4ENSG00000110080.182.475.493.98ENCSR000AEF
HepG2ST3GAL4ENSG00000110080.1812.4310.9411.68ENCSR985KAT
K562ST3GAL4ENSG00000110080.1812.8915.3714.13ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ST3GAL4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ST3GAL4 RNA is bound by 14 proteins.  







eCLIP assay for ST3GAL4 is not avaliable on ENCORE database.





14 proteins are bound to ST3GAL4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr11126284308126284366+3'-UTR,intron-Distal4.261433.31330K562UPF1
chr11126284383126284483+3'-UTR,intron-Distal3.761435.24353K562UPF1
chr11126276064126276111+3'-UTR,5'-UTR,CDS,intron-Proximal4.959986.69228HepG2PRPF8
chr11126278201126278255+3'-UTR,5'-UTR,CDS,intron-Proximal3.078763.67697K562YBX3
chr11126284218126284308+3'-UTR,intron-Distal5.144196.02674K562UPF1
chr11126276842126276899+3'-UTR,5'-UTR,CDS3.859954.41267HepG2PPIG
chr11126283397126283546+3'-UTR,CDS,intron-Distal,intron-Proximal4.063613.86978K562YBX3
chr11126284097126284172+3'-UTR,intron-Distal3.884923.25521K562LIN28B
chr11126225632126225738+5'-UTR,intron-Proximal5.2196811.35209HepG2DDX3X
chr11126277995126278057+5'-UTR,CDS,intron-Distal4.077363.49905HepG2PPIG
chr11126276773126276820+5'-UTR,intron-Proximal4.254754.57682HepG2SF3B4
chr11126225777126225827+5'-UTR,intron-Proximal4.190894.43799HepG2CSTF2T
chr11126268979126269045+intron-Distal4.8775813.30452HepG2QKI
chr11126236658126236746+intron-Distal3.105938.23490HepG2CSTF2T
chr11126269045126269101+intron-Distal5.9428311.15144HepG2QKI
chr11126236675126236740+intron-Distal4.209973.73076HepG2HNRNPUL1
chr11126233141126233275+intron-Distal5.063606.57566K562PTBP1
chr11126236091126236141+intron-Distal3.499084.69054HepG2CSTF2T
chr11126269911126269998+intron-Distal4.258554.27936HepG2PTBP1
chr11126226325126226390+intron-Distal3.817783.06347K562NONO
chr11126253287126253349+intron-Distal3.131614.90123HepG2CSTF2T
chr11126233294126233352+intron-Distal4.025853.44758HepG2CSTF2T
chr11126233139126233247+intron-Distal5.326018.82480HepG2PTBP1
chr11126252886126252986+intron-Distal3.526836.73713HepG2CSTF2T
chr11126268972126269111+intron-Distal6.3742015.08232K562QKI
chr11126226273126226352+intron-Distal,intron-Proximal3.293135.45050HepG2CSTF2T
chr11126253537126253620+intron-Distal3.348735.91153HepG2CSTF2T
chr11126226312126226386+intron-Distal4.029603.96304K562CSTF2T
chr11126227862126227929+intron-Distal4.302594.61649HepG2CSTF2T
chr11126228046126228107+intron-Distal3.098053.27222HepG2CSTF2T
chr11126226297126226391+intron-Distal3.196743.87304HepG2FAM120A
chr11126229611126229733+intron-Distal5.167967.89532HepG2PCBP2
chr11126236663126236744+intron-Distal3.222924.87202HepG2FAM120A
chr11126253289126253350+intron-Distal4.546153.99130HepG2FAM120A
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ST3GAL4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ST3GAL4 is not available on ENCORE database.

  • 50 RBPs can affect the levels of ST3GAL4.  








The Knockdown/knockout RNA-Seq assay for ST3GAL4 is not available on ENCORE database.





50 RBPs can affect the gene expression of ST3GAL4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ST3GAL4ENSG00000110080.14252.20470160.703800.650102.960202.14870HepG2ASCC1
ST3GAL4ENSG00000110080.14189.43950104.415000.859303.359902.37290HepG2BCLAF1
ST3GAL4ENSG00000110080.1451.6892090.74750-0.812002.119601.50900HepG2CPSF6
ST3GAL4ENSG00000110080.14153.6264076.131701.012804.250902.98910HepG2YBX3
ST3GAL4ENSG00000110080.14195.83580123.342900.666903.867902.90180HepG2DDX19B
ST3GAL4ENSG00000110080.1481.55500153.63710-0.913703.488302.82760HepG2EIF2S1
ST3GAL4ENSG00000110080.14247.35810165.320400.581202.030301.43610HepG2EIF4B
ST3GAL4ENSG00000110080.14270.79680168.729400.682403.372502.38110HepG2G3BP2
ST3GAL4ENSG00000110080.14177.90310102.851400.790402.953602.29440HepG2GPKOW
ST3GAL4ENSG00000110080.14147.0678083.401800.818203.700703.00950HepG2HNRNPU
ST3GAL4ENSG00000110080.14223.47630146.909700.605102.271901.52640HepG2LARP4
ST3GAL4ENSG00000110080.14278.70820172.341700.693403.193302.52030HepG2MATR3
ST3GAL4ENSG00000110080.14153.2510082.921000.886002.963502.04430HepG2PABPC1
ST3GAL4ENSG00000110080.14239.32410176.297700.440901.963201.43800HepG2PCBP1
ST3GAL4ENSG00000110080.14227.2169099.305401.194005.177304.22850HepG2RAVER1
ST3GAL4ENSG00000110080.14107.46010176.32600-0.714403.098702.38940HepG2RBM25
ST3GAL4ENSG00000110080.14196.33260116.614800.751403.026101.98810HepG2RBM27
ST3GAL4ENSG00000110080.14137.89640199.64060-0.533802.270501.77030HepG2NELFE
ST3GAL4ENSG00000110080.14144.2919077.041200.905203.534502.84830HepG2RPS19
ST3GAL4ENSG00000110080.14129.9168074.276600.806502.493501.87640HepG2SAFB2
ST3GAL4ENSG00000110080.14166.3062077.308701.105005.107903.84160HepG2SERBP1
ST3GAL4ENSG00000110080.14155.8156097.143200.681602.281001.63790HepG2SF3B1
ST3GAL4ENSG00000110080.14121.44800194.94550-0.682702.071201.64570HepG2SRSF1
ST3GAL4ENSG00000110080.14234.60860149.179100.653103.678602.97570HepG2SRSF5
ST3GAL4ENSG00000110080.14262.84650158.592500.728804.978504.27800HepG2SRSF9
ST3GAL4ENSG00000110080.14207.99580113.555000.873102.893601.80240HepG2TBRG4
ST3GAL4ENSG00000110080.14155.2308081.063500.937204.366603.76770HepG2TIAL1
ST3GAL4ENSG00000110080.14249.3545081.763301.6086013.8779012.75190HepG2TRIM56
ST3GAL4ENSG00000110080.14237.33560147.607500.685103.444202.45640HepG2TUFM
ST3GAL4ENSG00000110080.14139.3497069.478301.004004.207203.27100HepG2UCHL5
ST3GAL4ENSG00000110080.14177.31990116.314900.608202.701202.00970HepG2UPF1
ST3GAL4ENSG00000110080.14186.40410122.877900.601102.815302.13880HepG2ZC3H8
ST3GAL4ENSG00000110080.14846.38680420.498301.0091019.1877017.81140K562AGGF1
ST3GAL4ENSG00000110080.14648.09010462.044600.488103.706402.53070K562AKAP8
ST3GAL4ENSG00000110080.14558.54350437.542700.352101.971201.41750K562AKAP8L
ST3GAL4ENSG00000110080.14175.58840369.16710-1.072108.494107.55660K562AQR
ST3GAL4ENSG00000110080.14483.48230265.306300.8657010.185809.02570K562DDX47
ST3GAL4ENSG00000110080.14355.20740226.883300.646604.719903.81230K562EIF2S2
ST3GAL4ENSG00000110080.14274.54560147.416600.897002.407701.47580K562EIF3A
ST3GAL4ENSG00000110080.14210.15860118.370300.828104.592803.57900K562EIF3G
ST3GAL4ENSG00000110080.14295.01580193.237400.610303.589302.09120K562EWSR1
ST3GAL4ENSG00000110080.14252.00310160.637800.649502.289601.51780K562FIP1L1
ST3GAL4ENSG00000110080.1473.70310151.96870-1.044002.985502.24680K562G3BP2
ST3GAL4ENSG00000110080.14410.93690302.290100.442901.971501.32720K562GRSF1
ST3GAL4ENSG00000110080.14133.06160210.36840-0.660802.918002.30720K562HNRNPC
ST3GAL4ENSG00000110080.14212.70360132.160700.686502.155501.33880K562HNRNPM
ST3GAL4ENSG00000110080.14396.22960217.743300.863604.519303.50740K562HSPD1
ST3GAL4ENSG00000110080.14692.81720520.197000.413302.850701.92400K562MBNL1
ST3GAL4ENSG00000110080.14303.66370182.404400.735203.089302.21480K562PPIG
ST3GAL4ENSG00000110080.14342.58580171.060901.001906.315405.07090K562RPS19
ST3GAL4ENSG00000110080.14315.09430227.418100.470302.284801.30810K562SAFB
ST3GAL4ENSG00000110080.14502.72010249.439101.011003.981102.46250K562SF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ST3GAL4 is not available on ENCORE database.





2 RBPs can affect the splicing of ST3GAL4 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSST3GAL4ENSG00000110080.14chr11+1262771021262772441262771461262772441262768371262769180.052000.006930.03847longerK562AQR
MXEST3GAL4ENSG00000110080.14chr11+1262774681262775291262779931262780891262771461262772441262782011262783910.161000.000830.021201includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ST3GAL4 is not avaliable on ENCORE database.