SSX3

General Information

Gene Name       : SSX3
Gene ID             : ENSG00000165584.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SSX3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SSX3ENSG00000165584.150.000.000.00ENCSR000AEF
HepG2SSX3ENSG00000165584.150.000.000.00ENCSR985KAT
K562SSX3ENSG00000165584.1548.5348.6748.60ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SSX3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SSX3 RNA is bound by 7 proteins.  







eCLIP assay for SSX3 is not avaliable on ENCORE database.





7 proteins are bound to SSX3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX4820892448208993-3'-UTR,CDS,intron-Distal,intron-Proximal4.176913.12843K562PRPF8
chrX4820602948206086-3'-UTR,intron-Distal,intron-Proximal4.310134.06667K562GTF2F1
chrX4820693348206973-3'-UTR,CDS,intron-Distal,intron-Proximal4.074493.32022K562UCHL5
chrX4820602848206084-3'-UTR,intron-Distal,intron-Proximal3.8862213.37908K562HNRNPL
chrX4821462848214700-5'-UTR,CDS,intron-Distal3.084915.38953K562ZNF622
chrX4821151948211584-CDS,intron-Distal,intron-Proximal3.407393.99908K562BUD13
chrX4821152948211583-CDS,intron-Distal,intron-Proximal4.232885.96588K562ZNF622
chrX4820699348207094-CDS,intron-Distal,intron-Proximal5.361688.26501K562SF3B4
chrX4821142548211559-CDS,intron-Distal,intron-Proximal3.703145.66421K562PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SSX3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SSX3 is not available on ENCORE database.

  • 32 RBPs can affect the levels of SSX3.  








The Knockdown/knockout RNA-Seq assay for SSX3 is not available on ENCORE database.





32 RBPs can affect the gene expression of SSX3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SSX3ENSG00000165584.11764.26130959.76840-0.328603.174302.57330K562AGGF1
SSX3ENSG00000165584.11838.368401054.60180-0.331002.443101.52870K562AKAP8
SSX3ENSG00000165584.11673.43160998.67300-0.568505.766804.80330K562AKAP8L
SSX3ENSG00000165584.11420.40550864.95670-1.0408021.3349019.68820K562DDX47
SSX3ENSG00000165584.11800.20030593.107200.432004.348403.47420K562EIF2S2
SSX3ENSG00000165584.11302.27030489.24020-0.694706.176105.00390K562EIF3G
SSX3ENSG00000165584.11798.71700552.665300.531204.566403.51230K562EIF4A3
SSX3ENSG00000165584.11374.36540574.74390-0.618506.405205.54000K562FXR1
SSX3ENSG00000165584.11419.94420559.51490-0.414002.435301.68870K562GPKOW
SSX3ENSG00000165584.111083.93840790.415700.455503.328602.50250K562GRSF1
SSX3ENSG00000165584.11710.77200420.671500.756608.194607.21680K562HNRNPC
SSX3ENSG00000165584.11795.21510562.577200.499203.595202.16570K562HNRNPK
SSX3ENSG00000165584.11446.47390590.76650-0.404002.904501.95670K562MATR3
SSX3ENSG00000165584.11818.90440553.210000.565807.242705.98640K562MTPAP
SSX3ENSG00000165584.11291.36170424.90560-0.544302.932701.58650K562NONO
SSX3ENSG00000165584.11734.36640526.709300.479403.645902.52490K562PCBP2
SSX3ENSG00000165584.11501.73710662.08570-0.400102.169701.43290K562PCBP3
SSX3ENSG00000165584.11875.43440587.169000.576104.820802.66500K562PKM
SSX3ENSG00000165584.11389.13410507.85680-0.384202.255001.53180K562POLR2G
SSX3ENSG00000165584.11613.26050419.823900.546603.891503.00390K562PRPF8
SSX3ENSG00000165584.11772.92520575.110300.426403.665202.91230K562PTBP1
SSX3ENSG00000165584.11801.93960965.01490-0.267102.022001.50050K562RBM15
SSX3ENSG00000165584.11804.83150567.920200.502904.646102.84630K562RBM25
SSX3ENSG00000165584.11421.69130580.37210-0.460803.040101.88920K562NELFE
SSX3ENSG00000165584.11225.54390427.69360-0.923206.423605.16870K562RPS19
SSX3ENSG00000165584.11362.48940618.32880-0.770406.010004.46540K562RPS3
SSX3ENSG00000165584.11279.10940429.31310-0.621203.015801.62330K562RRP9
SSX3ENSG00000165584.11893.35200606.506700.558606.940705.69450K562SF3A3
SSX3ENSG00000165584.11647.48630504.670800.359402.929001.60580K562SSB
SSX3ENSG00000165584.11915.73990570.615600.682307.100005.91220K562TARDBP
SSX3ENSG00000165584.11821.06050599.307700.454104.335003.33440K562U2AF2
SSX3ENSG00000165584.11856.43650651.766300.393904.243303.37210K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SSX3 is not available on ENCORE database.





6 RBPs can affect the splicing of SSX3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESSX3ENSG00000165584.11chrX-482097944820990248209421482095574821153448211584-0.063000.000130.00720excludedK562PRPF8
SESSX3ENSG00000165584.11chrX-482089744820902248206942482070394820942148209557-0.223000.000550.01048excludedK562PUS1
SESSX3ENSG00000165584.11chrX-482097944820990248209421482095574821153448211584-0.066000.000220.01594excludedK562EFTUD2
SESSX3ENSG00000165584.11chrX-4820897448209022482069344820703948209421482095570.254000.000200.03624includedK562ZC3H8
SESSX3ENSG00000165584.11chrX-482089744820902248206934482070394820942148209557-0.233000.002500.04067excludedK562HNRNPC
A5SSSSX3ENSG00000165584.11chrX-482093684820955748209421482095574820694248207039-0.058000.000710.08839shorterK562TARDBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SSX3 is not avaliable on ENCORE database.