SNX7

General Information

Gene Name       : SNX7
Gene ID             : ENSG00000162627.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SNX7)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SNX7ENSG00000162627.160.090.250.17ENCSR000AEF
HepG2SNX7ENSG00000162627.1613.3526.6420.00ENCSR985KAT
K562SNX7ENSG00000162627.160.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SNX7 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SNX7 RNA is bound by 1 proteins.  







eCLIP assay for SNX7 is not avaliable on ENCORE database.





1 proteins are bound to SNX7 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr19914769099147764+intron-Distal4.184124.07628HepG2PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SNX7 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SNX7 is not available on ENCORE database.

  • 60 RBPs can affect the levels of SNX7.  








The Knockdown/knockout RNA-Seq assay for SNX7 is not available on ENCORE database.





60 RBPs can affect the gene expression of SNX7 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SNX7ENSG00000162627.12394.37160272.647000.532403.055001.93390HepG2AATF
SNX7ENSG00000162627.12269.60370370.26410-0.457703.045002.24450HepG2AKAP8L
SNX7ENSG00000162627.12496.78850609.25120-0.294402.123901.50870HepG2AUH
SNX7ENSG00000162627.12186.46520428.00960-1.1987012.1639011.02940HepG2BOP1
SNX7ENSG00000162627.12691.01110503.071200.457802.966602.16670HepG2CIRBP
SNX7ENSG00000162627.12226.66170388.96200-0.779103.567002.69230HepG2CNOT7
SNX7ENSG00000162627.12274.96130392.93240-0.515102.765502.07890HepG2CPSF6
SNX7ENSG00000162627.12508.41800639.13720-0.330102.669001.93830HepG2DAZAP1
SNX7ENSG00000162627.12508.51590300.955400.756605.425604.50860HepG2DDX21
SNX7ENSG00000162627.12469.08560294.389400.672005.361804.08440HepG2DDX24
SNX7ENSG00000162627.12503.81620352.600000.514804.309503.49990HepG2DKC1
SNX7ENSG00000162627.12469.52830277.035700.761004.910203.43090HepG2AGO1
SNX7ENSG00000162627.12319.53160506.27260-0.664004.292803.56340HepG2EIF2S1
SNX7ENSG00000162627.12235.44830351.84210-0.579503.287902.00720HepG2EIF2S2
SNX7ENSG00000162627.12405.93600284.124700.514603.272802.10700HepG2EIF3G
SNX7ENSG00000162627.12409.04300559.55440-0.452002.214501.64050HepG2EIF4A3
SNX7ENSG00000162627.12242.70560544.68330-1.166209.268408.04860HepG2EIF4B
SNX7ENSG00000162627.12561.79660699.51300-0.316302.353501.79090HepG2ETF1
SNX7ENSG00000162627.12236.84940328.49820-0.471902.129601.43210HepG2FUBP3
SNX7ENSG00000162627.12213.06700523.64130-1.2973010.933009.65420HepG2G3BP1
SNX7ENSG00000162627.12352.32080454.96410-0.368902.231301.58260HepG2HNRNPF
SNX7ENSG00000162627.12393.07840529.99770-0.431202.163601.54040HepG2HNRNPK
SNX7ENSG00000162627.12362.25530582.20080-0.684508.667707.53900HepG2HNRNPL
SNX7ENSG00000162627.12173.64370425.06330-1.2915012.4016011.19410HepG2HNRNPLL
SNX7ENSG00000162627.12346.67130448.01510-0.370001.964501.34620HepG2IGF2BP1
SNX7ENSG00000162627.12383.80260532.30600-0.471902.214901.60250HepG2IGF2BP2
SNX7ENSG00000162627.12247.00620416.32270-0.753208.718107.48770HepG2ILF2
SNX7ENSG00000162627.12391.90470567.76170-0.534803.011902.35680HepG2MATR3
SNX7ENSG00000162627.12408.91260581.16110-0.507102.947702.29560HepG2NCBP2
SNX7ENSG00000162627.12509.19540633.76780-0.315702.096001.43050HepG2NOL12
SNX7ENSG00000162627.12259.23400517.67890-0.997807.380506.21440HepG2PABPC4
SNX7ENSG00000162627.12353.11870531.47520-0.589805.797704.97020HepG2PCBP1
SNX7ENSG00000162627.12147.75930308.41870-1.061606.984205.76940HepG2PRPF8
SNX7ENSG00000162627.12453.65780642.22880-0.501505.628204.84470HepG2PUM1
SNX7ENSG00000162627.12432.75230641.75690-0.568505.166904.26340HepG2PUM2
SNX7ENSG00000162627.12326.48910585.68460-0.843109.615708.55100HepG2QKI
SNX7ENSG00000162627.12674.16270417.499200.691203.476402.68840HepG2RAVER1
SNX7ENSG00000162627.12629.49990462.868900.443503.169702.25840HepG2RBM15
SNX7ENSG00000162627.12416.43620584.66110-0.489504.208003.60370HepG2RBM22
SNX7ENSG00000162627.12440.24390560.56300-0.348602.406601.82660HepG2RECQL
SNX7ENSG00000162627.12279.34130447.29800-0.679203.559802.65460HepG2RPS2
SNX7ENSG00000162627.12235.84200362.95880-0.622005.007204.18500HepG2SAFB2
SNX7ENSG00000162627.12586.78090415.535200.497802.399901.77310HepG2SF3A3
SNX7ENSG00000162627.12555.19320420.722900.400002.289301.64490HepG2SF3B1
SNX7ENSG00000162627.12276.21120580.10090-1.0705017.5682016.08450HepG2SLBP
SNX7ENSG00000162627.12203.06660468.13010-1.205008.520407.15280HepG2SNRNP70
SNX7ENSG00000162627.12840.50380660.349100.347903.476202.93440HepG2SRFBP1
SNX7ENSG00000162627.12707.77760587.689500.268101.866801.45640HepG2SRSF1
SNX7ENSG00000162627.12446.01970597.34550-0.421503.611902.91380HepG2SRSF5
SNX7ENSG00000162627.12344.29070446.96890-0.376502.190901.56290HepG2SRSF7
SNX7ENSG00000162627.12372.62770478.12310-0.359602.585402.04840HepG2SRSF9
SNX7ENSG00000162627.12708.14580573.332300.304602.429001.94240HepG2SSB
SNX7ENSG00000162627.12205.87650316.27650-0.619403.417302.38010HepG2SUPT6H
SNX7ENSG00000162627.12376.55480485.37610-0.366202.243901.48910HepG2TIA1
SNX7ENSG00000162627.12229.09210399.57700-0.802508.341507.44630HepG2TRIM56
SNX7ENSG00000162627.12427.36270591.05760-0.467803.325502.36090HepG2TUFM
SNX7ENSG00000162627.12638.31720400.614600.672005.489204.62210HepG2U2AF1
SNX7ENSG00000162627.12462.29810625.62990-0.436502.280801.52650HepG2UBE2L3
SNX7ENSG00000162627.1299.64060235.10010-1.238508.450607.12670HepG2UCHL5
SNX7ENSG00000162627.12266.12210368.51580-0.469603.184302.44520HepG2UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SNX7 is not available on ENCORE database.





3 RBPs can affect the splicing of SNX7 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESNX7ENSG00000162627.12chr1+9912825299128372991272359912746799150440991506230.359000.000080.01512includedHepG2HNRNPM
SESNX7ENSG00000162627.12chr1+9912825299128372991272359912746799150440991506230.223000.000410.01224includedHepG2SRSF1
SESNX7ENSG00000162627.12chr1+9920379299203945991673429916745999225609992260560.152000.000070.02117includedHepG2DDX55

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SNX7 is not avaliable on ENCORE database.