SNHG11

General Information

Gene Name       : SNHG11
Gene ID             : ENSG00000174365.19
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SNHG11)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SNHG11ENSG00000174365.196.189.227.70ENCSR000AEF
HepG2SNHG11ENSG00000174365.1914.9217.3316.12ENCSR985KAT
K562SNHG11ENSG00000174365.1910.6710.3410.50ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SNHG11 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SNHG11 RNA is bound by 7 proteins.  







eCLIP assay for SNHG11 is not avaliable on ENCORE database.





7 proteins are bound to SNHG11 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr203707673237076764+intron-Distal,intron-Proximal5.69214400.00000HepG2DKC1
chr203707676437076768+intron-Distal,intron-Proximal5.93230400.00000HepG2DKC1
chr203707927737079336+intron-Distal,intron-Proximal3.963795.71420K562RBM15
chr203707672437076728+intron-Distal4.94788400.00000HepG2DKC1
chr203707677437076778+intron-Distal,intron-Proximal5.60108400.00000HepG2DKC1
chr203707680937076826+intron-Distal,intron-Proximal4.40153400.00000HepG2DKC1
chr203707685737076862+intron-Distal4.3381975.52312HepG2DKC1
chr203707679137076796+intron-Distal,intron-Proximal5.55008400.00000HepG2DKC1
chr203707676837076774+intron-Distal,intron-Proximal5.78224400.00000HepG2DKC1
chr203707740337077495+intron-Distal,intron-Proximal4.469394.96013K562PRPF8
chr203707808437078086+intron-Distal5.35888400.00000HepG2DKC1
chr203707917237079220+intron-Distal,intron-Proximal4.907714.77100HepG2BUD13
chr203707680437076808+intron-Distal,intron-Proximal4.85037400.00000HepG2DKC1
chr203707679637076801+intron-Distal,intron-Proximal4.96222400.00000HepG2DKC1
chr203707806637078072+intron-Distal5.39589400.00000HepG2DKC1
chr203707672837076732+intron-Distal4.98581400.00000HepG2DKC1
chr203707811737078150+intron-Distal3.99736400.00000HepG2DKC1
chr203707678037076791+intron-Distal,intron-Proximal5.87043400.00000HepG2DKC1
chr203707742537077491+intron-Distal,intron-Proximal5.271675.99517HepG2EFTUD2
chr203707805137078059+intron-Distal5.22131400.00000HepG2DKC1
chr203707807337078084+intron-Distal5.48775400.00000HepG2DKC1
chr203707808637078109+intron-Distal5.06207400.00000HepG2DKC1
chr203707805937078066+intron-Distal5.17588400.00000HepG2DKC1
chr203707801137078017+intron-Distal5.26874400.00000HepG2DKC1
chr203707801737078051+intron-Distal5.28875400.00000HepG2DKC1
chr203707905437079139+intron-Proximal5.918097.70650HepG2PRPF8
chr203707602737076086+intron-Proximal3.832823.00258HepG2RBM5
chr203707730437077383+intron-Proximal3.708268.74774HepG2PPIG
chr203707897037079005+intron-Proximal4.430964.84481HepG2PPIG
chr203707911337079172+intron-Proximal3.857944.09878HepG2BUD13
chr203707732937077381+intron-Proximal4.607704.02817HepG2PRPF8
chr203707933637079405+intron-Proximal4.151973.73331K562RBM15
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SNHG11 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SNHG11 is not available on ENCORE database.

  • 44 RBPs can affect the levels of SNHG11.  








The Knockdown/knockout RNA-Seq assay for SNHG11 is not available on ENCORE database.





44 RBPs can affect the gene expression of SNHG11 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SNHG11ENSG00000174365.15156.9413079.542900.980302.967602.35050HepG2BOP1
SNHG11ENSG00000174365.15254.86590183.409300.474602.265901.65510HepG2CKAP4
SNHG11ENSG00000174365.15251.75410169.663300.569203.023602.15450HepG2DDX19B
SNHG11ENSG00000174365.15178.35310126.134600.499702.231801.63400HepG2DNAJC2
SNHG11ENSG00000174365.15152.2778093.629200.701602.517901.45840HepG2EFTUD2
SNHG11ENSG00000174365.15279.19940181.432900.621802.945402.33380HepG2EIF2S1
SNHG11ENSG00000174365.15415.74830200.499501.052008.387707.27670HepG2EIF4A3
SNHG11ENSG00000174365.15259.88910179.262500.535702.642001.82580HepG2EWSR1
SNHG11ENSG00000174365.15291.64220187.665200.635903.152602.44430HepG2G3BP1
SNHG11ENSG00000174365.15309.34040199.241500.634603.248702.28120HepG2G3BP2
SNHG11ENSG00000174365.15140.9337081.176400.795803.090102.14000HepG2GEMIN5
SNHG11ENSG00000174365.15245.14650128.487700.931905.504304.63600HepG2HNRNPA1
SNHG11ENSG00000174365.15229.87410142.915500.685602.715802.02850HepG2HNRNPC
SNHG11ENSG00000174365.15302.87440190.047500.672303.539502.75530HepG2HNRNPK
SNHG11ENSG00000174365.15213.88590141.970900.591103.008802.37900HepG2HNRNPU
SNHG11ENSG00000174365.15242.11870174.841100.469602.043501.41510HepG2IGF2BP1
SNHG11ENSG00000174365.15238.79490148.095900.689102.863702.01960HepG2LARP4
SNHG11ENSG00000174365.15444.71990202.382101.1357010.196008.96080HepG2MAGOH
SNHG11ENSG00000174365.15373.66200279.667600.417902.155001.56030HepG2PUM2
SNHG11ENSG00000174365.15263.82810182.961400.528002.797702.17800HepG2RECQL
SNHG11ENSG00000174365.15134.7971088.708400.603501.879701.36410HepG2RPS19
SNHG11ENSG00000174365.15286.39520187.791900.608802.403101.77560HepG2SF3A3
SNHG11ENSG00000174365.15279.51250183.744600.605103.534002.87710HepG2SF3B4
SNHG11ENSG00000174365.15194.15870260.30350-0.423001.959301.42100HepG2SRSF5
SNHG11ENSG00000174365.15422.55360303.106100.479203.615803.04620HepG2SSB
SNHG11ENSG00000174365.15222.17380137.963900.687303.583003.02940HepG2TIAL1
SNHG11ENSG00000174365.15261.47930150.929200.792704.040403.28720HepG2U2AF1
SNHG11ENSG00000174365.15284.05990143.391400.986104.296103.03050HepG2UPF2
SNHG11ENSG00000174365.15301.84400154.227500.968604.858403.90600HepG2XRN2
SNHG11ENSG00000174365.15265.94230187.265500.505902.679401.45880K562APOBEC3C
SNHG11ENSG00000174365.15943.74300222.265402.0860029.6178027.90160K562AQR
SNHG11ENSG00000174365.15231.29630138.248400.742404.557803.74870K562DDX47
SNHG11ENSG00000174365.15168.89050105.991900.672002.301301.36740K562EIF3D
SNHG11ENSG00000174365.15150.6757089.916700.744702.820502.01710K562EIF3G
SNHG11ENSG00000174365.15205.4036090.512101.182207.749706.37580K562EIF4A3
SNHG11ENSG00000174365.15320.16390212.218600.593203.820302.71910K562EIF4G2
SNHG11ENSG00000174365.15159.6202094.128800.761803.306602.65370K562FXR1
SNHG11ENSG00000174365.15353.53570238.338400.568703.270502.45100K562GRSF1
SNHG11ENSG00000174365.15140.4136088.764000.661502.578101.43980K562IGF2BP3
SNHG11ENSG00000174365.15172.3744091.696300.910503.393002.45640K562MAGOH
SNHG11ENSG00000174365.15132.2547081.580900.696902.244301.36780K562PCBP2
SNHG11ENSG00000174365.15188.4979096.353800.968004.272203.34170K562PRPF8
SNHG11ENSG00000174365.15331.75250231.553200.518702.969402.12290K562PUF60
SNHG11ENSG00000174365.15165.8646098.130200.757102.554101.77030K562RPS19
SNHG11ENSG00000174365.1593.5546049.644100.914103.078802.17540K562SF3B4
SNHG11ENSG00000174365.15157.9097088.388500.837103.614902.80240K562TARDBP
SNHG11ENSG00000174365.15142.3255085.262900.739102.773101.95420K562TIA1
SNHG11ENSG00000174365.15203.43260137.034700.569902.702901.99220K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SNHG11 is not available on ENCORE database.





12 RBPs can affect the splicing of SNHG11 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESNHG11ENSG00000174365.15chr20+3707657237076736370761083707626637077304370773730.155000.000060.00107includedK562AQR
SESNHG11ENSG00000174365.15chr20+3707657237076736370761083707626637077304370773730.225000.000130.00736includedHepG2HNRNPC
A3SSSNHG11ENSG00000174365.15chr20+3707730437077373370773083707737337076108370762660.120000.003920.02332longerK562AQR
RISNHG11ENSG00000174365.15chr20+370789783707956437078978370790903707917537079564-0.137000.000010.00177excludedHepG2AKAP1
RISNHG11ENSG00000174365.15chr20+370789783707956437078978370790903707917537079564-0.325000.000000.00015excludedK562GEMIN5
RISNHG11ENSG00000174365.15chr20+3707897837079564370789783707909037079175370795640.134000.001370.06376includedHepG2BCCIP
RISNHG11ENSG00000174365.15chr20+370789783707956437078978370790903707917537079564-0.131000.000410.01250excludedK562HNRNPC
RISNHG11ENSG00000174365.15chr20+370789783707956437078978370790903707917537079564-0.204000.000310.00341excludedHepG2U2AF2
RISNHG11ENSG00000174365.15chr20+3707897837079564370789783707909037079175370795640.188000.000460.01444includedHepG2UCHL5
RISNHG11ENSG00000174365.15chr20+3707897837079564370789783707909037079175370795640.255000.000530.00884includedHepG2PRPF8
RISNHG11ENSG00000174365.15chr20+370789783707956437078978370790903707917537079564-0.259000.000050.00122excludedK562PRPF8
RISNHG11ENSG00000174365.15chr20+370789783707956437078978370790903707917537079564-0.272000.000010.00381excludedK562XRN2
RISNHG11ENSG00000174365.15chr20+370789783707956437078978370790903707917537079564-0.256000.000180.01226excludedK562SUPV3L1
RISNHG11ENSG00000174365.15chr20+370789783707956437078978370790903707917537079564-0.181000.000300.05617excludedK562WDR43
RISNHG11ENSG00000174365.15chr20+370789783707956437078978370790903707917537079564-0.245000.000230.00365excludedK562EFTUD2
RISNHG11ENSG00000174365.15chr20+3707897837079564370789783707909037079175370795640.124000.002060.06270includedHepG2XRN2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SNHG11 is not avaliable on ENCORE database.